| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | 458102 = | NA (NA) | 3 (0.030) | 3/280 | 2.5 | NA | coding (712/1557 nt) | hsdM_1 | Type I restriction enzyme EcoKI M protein |
| ? | USA300TCH1516_ALE | 458161 = | NA (NA) | coding (771/1557 nt) | hsdM_1 | Type I restriction enzyme EcoKI M protein | |||||
GACCCAACATGTGGTTCAGGTTCACTGTTGTTACGTGTTGGTAAAGAAACACAAGTGTATCGTTATTTCGGTCAAGAACGTAACAATACTACATACAACTTAGCACGCATGAATATGTTATTACATGATGTGCGTTATGAGAACTTCGATATCCGTAATGATGACACATTGGAAAACCCAGCCTTTTTAGGCAA > USA300TCH1516_ALE/458075‑458268 | gaaccAACAAGTGGTTCAGGTTCAATGTTGTTACGTGTTGGTAAAGAAACACTAGTGTATAGTTATTTCGGTTAAGAATGTAACAATAATACATACAACTTAGCACGCATGAACATGTTATTACATGATGTGCGGTATGGGAAATTAGata < 4:360208/148‑1 (MQ=1) aataaaCACAAGTGTAGCGTTATTTCGGTCAAGAACGTAACAATACTACATACAACTTAGCACGCATGAATATGTTATTACATGATGTGCGTTATGAGAACTTCGATATCCGTAATGATGACACATTGGAAAACCCAGCCTTTTTAGGCaa < 2:825172/148‑1 (MQ=1) | GACCCAACATGTGGTTCAGGTTCACTGTTGTTACGTGTTGGTAAAGAAACACAAGTGTATCGTTATTTCGGTCAAGAACGTAACAATACTACATACAACTTAGCACGCATGAATATGTTATTACATGATGTGCGTTATGAGAACTTCGATATCCGTAATGATGACACATTGGAAAACCCAGCCTTTTTAGGCAA > USA300TCH1516_ALE/458075‑458268 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |