Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	USA300TCH1516_ALE	1171580	1171700	121	2 [1]	[1] 2	hly/USA300HOU_RS05830	Alpha‑hemolysin/hypothetical protein

TTATTTTAAGAATATGTTTTTAACTTTTATTTAAAATTTGAAAGGAAGCATTTCAATTTCGAGGGTTAGTCAAAGTTGAATAAATTCTTTATGAAACAAGGAAAAGACATAGCTAATTTTATTGATTAATTTCTTTAAAACTAATGATTTGTTTGATTTAAAAATGTAATCGATTACAATAT  >  USA300TCH1516_ALE/1171429‑1171610                                                                                                                                                       |                                ttattTTAAGGATATGTTTTTAACTTTTATTTAAAATTTGAAAGGAAGCATTTCAATTTCGAGGGTTATTCAAAGTTGATTAAATTCTTTATGAAACAAGGAAAAGACATAGCTAATTTTATTGATTAATTTCTTTAAAACTAATGAtttg                                 <  2:523376/151‑1 (MQ=255)                                taAAATTTGAAAGGAAGCATTTCAATTTCGAGGGTTAGTCAAAGTTGAATAAATTCTTTATGAAACAAGGAAAAGACATAGCTAATTTTATTGATTAATTTCTTTAAAACTAATGATTTGTTTGATTTAAAAATGTAATCGATTACAatat  <  1:179319/151‑1 (MQ=255)                                                                                                                                                       |                                TTATTTTAAGAATATGTTTTTAACTTTTATTTAAAATTTGAAAGGAAGCATTTCAATTTCGAGGGTTAGTCAAAGTTGAATAAATTCTTTATGAAACAAGGAAAAGACATAGCTAATTTTATTGATTAATTTCTTTAAAACTAATGATTTGTTTGATTTAAAAATGTAATCGATTACAATAT  >  USA300TCH1516_ALE/1171429‑1171610

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑