Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	USA300TCH1516_ALE	1171580	1171700	121	2 [1]	[1] 2	hly/USA300HOU_RS05830	Alpha‑hemolysin/hypothetical protein

CAATTAATTAACTATTAAATAAAAATTAACTATATATTAACTAGTGTAAATTAATAAATAGAAATAGAGAAAAAGGGTATTAATTATGTTTGGAATTTCGTCGGGAATAAATTTTGCCATTACATAGAAATATCTAATAGATAACGAAAAAGTATCGTATGTATTTTTAATATAGTGTAAAATATTATATGTAAAATAAAATGTAGGTTTTTAG  >  USA300TCH1516_ALE/1171638‑1171851                                                                |                                                                                                                                                       cAATTAATTAACTATTAAATAAAAATTAACTATATATTAACTAGTGTAAATTAATAAATAGAAATAGAGAAAAAGGGTATTAATTATGTTTGGAATTTCGTCGGGAATAAATTTTGCCATTACATAGAAATATCTAATAGATAACGaaaaa                                                                 >  2:326594/1‑151 (MQ=255)                                                                atagaGAAAAAGGGTATTAATTATGTTTGGAATTTCGTCGGGAATAAATTTTGCCATTACATAGAAATATCTAATAGATAACGAAAAAGTATCGTATGTATTTTTAATATAGTGTAAAATATTATATGTAAAATAAAATGTAGGTTTttag  <  1:326594/151‑1 (MQ=255)                                                                |                                                                                                                                                       CAATTAATTAACTATTAAATAAAAATTAACTATATATTAACTAGTGTAAATTAATAAATAGAAATAGAGAAAAAGGGTATTAATTATGTTTGGAATTTCGTCGGGAATAAATTTTGCCATTACATAGAAATATCTAATAGATAACGAAAAAGTATCGTATGTATTTTTAATATAGTGTAAAATATTATATGTAAAATAAAATGTAGGTTTTTAG  >  USA300TCH1516_ALE/1171638‑1171851

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑