Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	USA300TCH1516_ALE	58811	58986	176	2 [1]	[1] 2	USA300TCH1516_00049/USA300HOU_RS00245	hypothetical protein/hypothetical protein

TGATATTTAATAATTAAATAAAAGTATGCTAAATATTTATAATTTACAAGTGAGCTGATAGAAAGATGAGTATAAGCGAATATAAAAATAGATACTTAGAGTCACTATATAACACCTTTAAAACTGAGTTAGAAAACGAACGCACTCGCTATTTTATATT  >  USA300TCH1516_ALE/58978‑59137          |                                                                                                                                                       tGATATTTAATAATTAAATAAAAGTATGCTAAATATTTATAATTTACAAGTGAGCTGATAGAAAGATGAGTATAAGCGAATATAAAAATAGATACTTAGAGTCACTATATAACACCTTTAAAACTGAGTTAGAAAACGAACGCACTCGCtc           >  2:611383/1‑150 (MQ=255)          ataatTAAATAAAAGTATGCTAAATATTTATAATTTACAAGTGAGCTGATAGAAAGATGAGTATAAGCGAATATAAAAATAGATACTTAGAGTCACTATATAACACCTTTAAAACTGAGTTAGAAAACGAACGCACTCGCTATTTTATAtt  >  4:416887/1‑151 (MQ=255)          |                                                                                                                                                       TGATATTTAATAATTAAATAAAAGTATGCTAAATATTTATAATTTACAAGTGAGCTGATAGAAAGATGAGTATAAGCGAATATAAAAATAGATACTTAGAGTCACTATATAACACCTTTAAAACTGAGTTAGAAAACGAACGCACTCGCTATTTTATATT  >  USA300TCH1516_ALE/58978‑59137

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑