New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913_3_bme_pgi	= 354697	50 (1.090)	6 (0.140)	5/270	5.8	11.1%	noncoding (99/171 nt)	REP26 (repetitive extragenic palindromic) element; contains 4 REP sequences	REP26 (repetitive extragenic palindromic) element; contains 4 REP sequences
	?	NC_000913_3_bme_pgi	= 354713	49 (1.120)					noncoding (115/171 nt)	REP26 (repetitive extragenic palindromic) element; contains 4 REP sequences	REP26 (repetitive extragenic palindromic) element; contains 4 REP sequences
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

CTGCGTCGTTGGATCAGATCCGCCAGGCGATGGAAGAGTAGGTTATTGTCGGATGCGTCGCGCGGTGCATCCGGCACTGTGTGCCGATGCCTGATGCGACGCTGACGCGTTTTATCATGCCTACGGACCTGAACCGTAGGTCGGATAAGGCGCTCGCGTCGCATCCGACACCATGCTCAGATGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACCCACTGTTTTTACACCGATAATTTTTCCCCCACCTTTTTGCACTCATTCATATAAAAAATA  >  NC_000913_3_bme_pgi/354552‑354830                                                                                                                                                  |                                                                                                                                      cTGCGTCGTTGGATCAGATCCGCCAGGCGATGGAAGAGTAGGTTATTGTCGGATGCGTCGCGCGGTGCATCCGGCACTGTGTGCCGATGCCTGATGCGACGCTGACGCGTTTTATCATGCCTACGGACCTGAACCGTAGGTCGGATAAg                                                                                                                                    <  2:201124/149‑1 (MQ=255)  tGCGTCGTTGGATCAGATCCGCCAGTCGATGGAAGAGTAGGTTATTGTCGGATGCGTCGCGCGGTGCATCCGGCACTGTGTGCCGATGCCTGATGCGACGCTGACGCGTTTTATCATGCCTACGGACCTGAACCGTAGGTCGGATAAgg                                                                                                                                   <  2:629456/149‑1 (MQ=255)  tGCGTCCTTGGATCAGATCCGCCAGGCGATGGAAGAGTAGGTTATTGTCGGATGCGTCGCGCGGTGCATCCGGCACTGTGTGCCGATGCCTGATGCGACGCTGACGCGTTTTATCATGCCTACGGACCTGAACCGTAGGTCGGATAAgg                                                                                                                                   <  1:798303/149‑1 (MQ=255)   gCGTCGTTGGATCAGATCCGCCAGGCGATGGAAGAGTAGGTTATTGTCGGATGCGTCGCGCGGTGCATCCGGCACTGTGTGCCGATGCCTGATGCGACGCTGACGCGTTTTATCATGCCTACGGACCTGAACCGTAGGTCGGATAAGgc                                                                                                                                  >  2:750513/1‑149 (MQ=255)           ggATCAGATCCGCCAGGCGATGGAAGAGTAGGTTATTGTCGGATGCGTCGCGCGGTGCATCCGGCACTGTGTGCCGATGCCTGATGCGACGCTGACGCGTTTTATCATGCCTACGGACCTGAACCGTAGGTCGGATCAGGCGCTCGCGt                                                                                                                          >  1:506368/1‑149 (MQ=255)           ggATCAGATCCGCCAGGCGATGGAAGAGTAGGTTATTGTCGGATGCGTCGCGCGGTGCATCCGGCACTGTGTGCCGATGCCTGATGCGACGCTGACGCGTTTTATCATGCCTACGGACCTGAACCGTAGGTCGGATAAGGCGCTCGCGt                                                                                                                          >  1:100895/1‑149 (MQ=255)                aGATCCGCCAGGCGATGGAAGAGTAGGTTATTGTCGGATGCGTCGCGCGGTGCATCCGGCACTGTGTGCCGATGCCTGATGCGACGCTGACGCGTTTTATCATGCCTACGGACCTGAACCGTAGGTCGGATAAGGCGCTCGCGTCGCAt                                                                                                                     >  1:189940/1‑149 (MQ=255)                      gCCAGGCGATGGAAGAGTAGGTTATTGTCGGATGCGTCGCGCGGTGCATCCGGCACTGTGTGCCGATGCCTGATGCGACGCTGACGCGTTTTATCATGCCTACGGACCTGAACCGTAGGTCGGATAAGGCGCTCGCGTCGCATCCGacc                                                                                                               >  1:148761/1‑148 (MQ=255)                      gCCAGGCGATGGAAGAGTAGGTTATTGTCGGATGCGTCGCGCGGTGCATCCGGCACTGTGTGCCGATGCCTGATGCGACGCTGACGCGTTTTATCATGCCTACGGACCTGAACCGTAGGTCGGATAAGGCGCTCGCGTCGCATCCGaca                                                                                                               <  1:581542/149‑1 (MQ=255)                         aGGCGATGGAAGAGTAGGTTATTGTCGGATGCGTCGCGCGGTGCATCCGGCACTGTGTGCCGATGCCTGATGCGACGCTGACGCGTTTTATCATGCCTACGGACCTGAACAGTAGGTCGGATAAGGCTCTCGCGGCGCATCCGacatcc                                                                                                            >  2:796450/1‑146 (MQ=255)                                 gAAGAGTAGGTTATTGTCGGACGCTTCGCGCGGTGCATCCGGCACTGTGTGCCGATGCCTGCTGCGACGCTGACGCGTTTTATCATGCCTACGGACCTGAACCGTAGGTCGGATAAGGCGCTCGCGTCGCATCCGACACCATGCTCAGa                                                                                                    <  1:220362/149‑1 (MQ=255)                                  aaGAGTAGGTTATTGTCGGATGCGTCGCGCGGTGCATCCGGCACTGTGTGCCGATGCCTGATGCGACGCTGACGCGTTTTATCATGCCTACGGACCTGAACCGTAGGTCGGATAAGGCGCTCGCGTCGCATCCGACACCATGCTCAGAt                                                                                                   >  1:401800/1‑149 (MQ=255)                                     attAGGTTATTGTCGGATGCGTCGTGCGGTGCATCCGGCACTGTGTGCCGATGCCTGATGCGACGCTGACGCGTTTTATCATGCCTACGGACCTGAACCGTAGGTCGGATAAGGCGCTCGCGTCGCATCCGACACCATGCTCAGATGcc                                                                                                <  1:724040/147‑1 (MQ=255)                                     agTAGGTTATTGTCGGATGCGTCGCGCGGTGCATCCGGCACTGTGTGCCGATGCCTGATGCGACGCTGACGCGTTTTATCATGCCTACGGACCTGAACCGTAGGTCGGATAAGGCGCTCGCGTCGCATCCGACACCATGCTCAGATGcc                                                                                                <  1:724052/149‑1 (MQ=255)                                     agTAGGTTATTGTCGGATGCGTCGCGCGGTGCATCCGGCACTGTGTGCCGATGCCTGATGCGACGCTGACGCGTTTTATCATGCCTACGGACCTGAACCGTACGTCGGATAAGGCGCCCGCGTCGCATCCGACACCCTGCTCTGATGcc                                                                                                >  2:203630/1‑149 (MQ=255)                                       tAGGTTATTGTCGGATGCGTCGCGCGGTGCATCCGGCACTGTGTGCCGATGCCTGATGCGACGCTGACGCGTTTTATCATGCCTACGGACCTGAACCGTAGGTCGGATAAGGCGCTCGCGTCGCATCCGACACCATGCCCAGATCCCTg                                                                                              >  2:173235/1‑149 (MQ=255)                                        aGGTTATTGTCGGATGCGTCGCGCGGTGCATCCGGCACTGTGTGCCGATGCCTGATGCGACGCTGACGCGTTTTATCATGCCTACGGACCTGAACCGTAGGTCGGATAAGCCGCTCGCGTCGCATCCGACACCATGCTCAGATGCCTGa                                                                                             <  2:710836/149‑1 (MQ=255)                                          gTTATTGTCGGATGCGTCGCGCGGTGCATCCGGCACTGTGTGCCGATGCCTGATGCGACGCTGACGCGTTTTATCATGCCTACGGACCTGAACCGTAGGTCGGATAAGGCGCTCGCGTCGCCTCCGACCCCATGCTCAGATTCCTGATg                                                                                           >  2:137470/1‑149 (MQ=255)                                             atggTCGGAGGCTTCGCGCGGTGGAGCCGGCACCGTGTGCCGCTGCCGGATGCGGCGCTGACGCGTTTTATCAGGCCTACGGACCTGAACCGTAGGTCGGATAAGGCGCTCGCGGCGCATCCGTCACCATGCTCAGATGCCTGATGCGa                                                                                        <  2:77451/146‑1 (MQ=37)                                                     aTGCGTCGCGCGGTGCATCCGGCACTGTGTGCCGATGCCTGATGCGACGCTGACGCGTTTTATCATGCCTACGGACCTGAACCGTAGGTCGGATAAGGCGCTCGCGTCGCATCCGACACCATGCTCAGATGCCTGATGCGACGCTGAcg                                                                                >  1:351450/1‑149 (MQ=255)                                                          tCGCGCGGTGCATCCGGCACTGTGTGCCGATGCCTGATGCGACGCTGACGCGTTTTATCATGCCTACGGCCCTGAACCGTAGCGCGGATAAGGCGCCCGCGTCGCGTCCGACAACATTGTCCCGTTCCTGCTGCGTCGCGGAcgacgct                                                                           >  2:147527/1‑144 (MQ=25)                                                          tCGCGCGGTGCATCCGGCACTGTGTGCCGATGCCTGATGCGACGCTGACGCGTGTTGTCATGCCTACGGCCCTTAACCGTAGGTCGGATAAGGCGCTCGCGTCGCATCCGACACCATGCTCAGATGCCTGATGCGACGCGGACGCGTCt                                                                           >  2:133909/1‑149 (MQ=39)                                                           tgcgcgGTGCCTCCCGCCCTCGGCGCCGAGGCCTGATGCGACTCTGACGCGTTTTAGCATGCCTACGGACCTGAATCGTAGGTCGGATAAGGCGCTCGCGTCGCATCCGACACCATGCTCAGATGCCTGATGCGACGCTGACGCGTCtt                                                                          <  1:332209/148‑1 (MQ=255)                                                           cgcgcgGTGCATCCGGCAGTGTGTGCCGATGCCTGATTCGACGCTGACGCCGTTTATCATGCCTACGGACCTGAACCGTAGGCCGGAGAAGGCGCTCGCGTCGCATCCGACACCATGCTCAGATGCCTGATGCGACGCTGACGCGTCtt                                                                          <  1:332440/149‑1 (MQ=255)                                                             cgcgGTGCATCCGGCACTGTGTGCCGATGCCTGATGCGACGCTGACGCGTTTTATCATGCCTACGGACCTGAACCGTAGGTCGGATAAGGCGCTCGCGTCGCATCCGACACCATGCTCAGATGCCTGATGCGACGCTGACGCGTCTTAt                                                                        <  1:587427/149‑1 (MQ=255)                                                             cgcgGTGCATCCGGCACTGTGTGCCGATGCCTGATGCGACGCTGACGCGTTTTATCATGCCTACGGACCTGAACCGTAGGTCGGATAAGGCGCTCGCGTCGCATCCGACACCATGCTCAGATGCCTGATGCGACGCTGACGCGTCTTAt                                                                        <  1:710518/149‑1 (MQ=255)                                                             cgcgGTGCATCCGGACCTGGGGGCCGATGCCGGAGGCGACGCTGGCGGGTTTTATCATGCCTACGGACCTGAACCGTAGGTCGGATAAGGCGCTCGCGTCGCATCCGACAGCATGCTCAGATGCCTGTTGCGACGCTGACGCGTCTTAt                                                                        <  2:711783/149‑1 (MQ=38)                                                                    cATCCGGCACTGTGTGCCGATGCCTGATGCGACGCTGACGCGTTTTATCATGCCTACGGACCTGAACCGTAGGTCGGATAAGGCGCTCGCGTCGCATCCGACACCATGCTCAGATGCCTGATGCGACGCTGACGCGTCTTATCAGGCCt                                                                 >  1:441411/1‑149 (MQ=255)                                                                     aTCCGGCACTGTGTGCCGATGCCTGATGCGACGCTGACGCGTTTTATCATGCCTACGGACCTGAACCGTAGGTCGGATAAGGCGCTCGCGTCGCATCCGACACCATGCTCAGATGCCTGCTGCGACGCTGACGCGTCTTATCAGGCCTa                                                                >  2:410590/1‑149 (MQ=255)                                                                      ctcgtcgcTGTGTGCCGATGCCTGATGCGACGCTGACGCGTTTTATCATGCCTACGGACCTGAACCGTAGGTCGGATAAGGCGCTAGCGCCGCATCCGACACCATGCTCAGTTGCCTGATGCGACGCTGACGGGTCTTATCAGGCCTAc                                                               >  2:747358/8‑149 (MQ=38)                                                                        cGGCACTGTGTGCCGATGCCTGATGCGACGCTGACGCGTTTTATCATGCCTACGGACATGAACCGTAGGTCGGATAAGGCGCTCGCGTCGCATCCGACACCATGCTCAGATGCCTGATGCGACGCTGACGCGTCTTCTCAGGCCtgcac                                                             >  1:43999/1‑145 (MQ=255)                                                                        cGGCACTGTGTGCCGATGCCTGATACGACGCTGACGCGTTTTATCATGCCTACGGACCTGAACCGTAGGTCGGATAAGGCGCTCGCGTCGCATCCGACACCATGCTCAGATGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTAccc                                                             >  1:700135/1‑149 (MQ=255)                                                                            aCTGCGTGCCGATGCCTGATGCGACGCTGACGCGTTTTATCATGCCTACGGACCTGAACCGTAGGTCGGATAAGGCGCTCGCGTCGCATCCGACACCATGCTCAGATGCCTGATGCGCCGCTGCCGCGTCTTTTCAGGCCTACCCACTg                                                         >  2:735754/1‑149 (MQ=255)                                                                                 gtgCCGATGCCTGATGCGACGCTGACGCGTTTTATCATGCCTACGGACCTGAACCGTAGGTCGGATAAGGCGCTCGCGTCGCATCCGACACCATGCTCAGATGCCTGATGCGCCGCTGACGCGTCTTATCAGGCCTACCCACTGttttt                                                    >  1:467482/1‑149 (MQ=255)                                                                                  tgCCGATGCCTGATGCGACGCTGACGCGTTTTATCATGCCTACGGACCTGAACCGTAGGTCGGATAAGGCGCTCGCGTCGCATCCGACACCATGCACAGATGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACCCACTGTTTTTa                                                   <  1:534450/149‑1 (MQ=255)                                                                                    ccGATGCCTGATGCGACGCTGACGCGTTTTATCATGCCTACGGACCTGAACCGTAGGTCGGATAAGGCGCTCGCGTCGCATCCGACACCATGCTCAGATGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACCCACTGTTTTTaca                                                 >  2:483918/1‑149 (MQ=255)                                                                                     cGATGCCTGATGCGACGCTGACGCGTTTTATCATGCCTACGGACCTGAACCGTAGGTCGGATAAGGCGCTCGCGTCGCATCCGACACCATGCTCAGATGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACCCACTGTTTTTacac                                                <  1:733276/149‑1 (MQ=255)                                                                                            tggtGCGAGGCTGACGCGTTTTATCATGTCTCCGGAACTGGAGCGTAGGTGGGATTAGGCGCTCGCGTCGCATCCGAGACCATGCTGAGATGCCTGATGCGACGCGGATGGGTCTTGTCAGGCCTCGCCACTTTTTTTACACCaataat                                         >  2:497904/4‑149 (MQ=255)                                                                                                  gACGCTGACGCGTTTTATCATGCCTACGGACCTGCACCGTAGGTCGGATAAGGCGCTCGCGTCGCATCCGACACCATGCTCAGATGCCTGATGCGACGCTAGCGCGTCTTATCAGGCCTACCCACTGTTTTTATCCCGATCATTTATcc                                   >  2:36383/1‑149 (MQ=37)                                                                                                  gACGCTGACGCGTTTTATCATGCCTACGGACCTGAACCGTAGGTCGGATAAGGCGCTCGCGTCGCATCCGACACCATGCTCAGATGCCTGATGCGACGCTGACGCGTCTTATCTGGCCTACCCACTGTTTTTACTCCGATAAtttttat                                   >  2:404030/1‑147 (MQ=255)                                                                                                   aCGCTGACGCGTTTTATCATGCCTACGGACCTGAACCGTAGGTCGGATAAGGCGCTCGCGTCGCATCCGACACCATGCTCAGATGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACCCACTGTTTTTACACCGATAATTTTTccc                                  <  2:553924/149‑1 (MQ=255)                                                                                                           gcgTTTTATCATGCCTACGGACCTGAACCGTAGGTCGGATAAGGCGCTCGCGTCGCATCCGACACCATGCTCAGATGCCTGATGCGACGCTGACGCGTCTTATc                                                                       <  2:549751/104‑1 (MQ=255)                                                                                                           gcgTTTTATCATGCCTACGGACCTGAACCGTAGGTCGGATAAGGCGCTCGCGTCGCATCCGACACCATGCTCAGATGCCTGATGCGACGCTGACGCGTCTTATc                                                                       >  1:549751/1‑104 (MQ=255)                                                                                                                     aTGCCTACGGAGCTGAACCGTAGGTCGGATAAGGCGCTCGCGTCGCATCCGACACCATGCTCAGATGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACCCACTGTTTTTACACCGATAATTTTTCCCCCACCTTTTTGCACtcat                <  2:235874/149‑1 (MQ=255)                                                                                                                      tGCCTACGGACCTGAACCGTAGGTCGGATAAGGCGCTCGCGTCGCATca                                                                                                                   <  2:208230/49‑2 (MQ=255)                                                                                                                      tGCCTACGGACCTGAACCGTAGGTCGGATAAGGCGCTCGCGTCGCATca                                                                                                                   >  1:208230/1‑48 (MQ=255)                                                                                                                         cTACGGACCTGAACCGTAGGTCGGATAAGGCGCTCGCGTCGCATCCGACACCATGCTCAGATGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACCCACTGTTTTTACACCGATAATTTTTCCCCCCCCTTTTTGCCAtcattctt            >  2:63423/1‑147 (MQ=255)                                                                                                                             ggACCTGAACCGTAGGTCGGATAAGGCGCTCGCGTCGCATCCGACACCATGCTCAGATGCCTGATACGACGCTGACGCGTCTTATCAGGCCTACCCACTGTTTTTCCACCGCTAATTTTTCCCCCCCCTTTTTGCACTCATTCATTTaa        >  1:222211/1‑149 (MQ=39)                                                                                                                              gACCTGAACCGTAGGTCGGATAAGGCGCTCGCGTCGCATCCGACACCATGCTCAGATGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACCCACTGTTTTTACACCGATAATTTTTCCCCCACCTTTTTGCACTCATTCATATaaa       <  2:537604/149‑1 (MQ=255)                                                                                                                               aCCTGAACCGTAGGTCGGATAAGGCGCTCGCGTCGCATCCGACACCATGCTCAGATGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACCCACTGTTTTTACACCGATAATTTTTCCCCCACCTTTTTGCACTAATTCATATaaaa      >  2:525042/1‑149 (MQ=255)                                                                                                                                   gAACCGTAGGTCGGATAAGGCGCTCGCGTCGCATCCGACACCATGCTCAGATGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACCCACTGTTTTTACACCGATAATTTTTCCCCCACCTTTTTGCACTCATTCATATAAAAAatc  >  1:402709/1‑148 (MQ=255)                                                                                                                                                  |                                                                                                                                      CTGCGTCGTTGGATCAGATCCGCCAGGCGATGGAAGAGTAGGTTATTGTCGGATGCGTCGCGCGGTGCATCCGGCACTGTGTGCCGATGCCTGATGCGACGCTGACGCGTTTTATCATGCCTACGGACCTGAACCGTAGGTCGGATAAGGCGCTCGCGTCGCATCCGACACCATGCTCAGATGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACCCACTGTTTTTACACCGATAATTTTTCCCCCACCTTTTTGCACTCATTCATATAAAAAATA  >  NC_000913_3_bme_pgi/354552‑354830

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.