New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913_3_bme_pgi	= 354697	50 (1.090)	6 (0.140)	5/270	5.8	11.1%	noncoding (99/171 nt)	REP26 (repetitive extragenic palindromic) element; contains 4 REP sequences	REP26 (repetitive extragenic palindromic) element; contains 4 REP sequences
	?	NC_000913_3_bme_pgi	= 354713	49 (1.120)					noncoding (115/171 nt)	REP26 (repetitive extragenic palindromic) element; contains 4 REP sequences	REP26 (repetitive extragenic palindromic) element; contains 4 REP sequences
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

AGATCCGCCAGGCGATGGAAGAGTAGGTTATTGTCGGATGCGTCGCGCGGTGCATCCGGCACTGTGTGCCGATGCCTGATGCGACGCTGACGCGTTTTATCATGCCTACGGACCTGAACCGTAGGTCGGATAAGGCGCTCGCGTCGCATCCGACACCATGCTCAGATGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACCCACTGTTTTTACACCGATAATTTTTCCCCCACCTTTTTGCACTCATTCATATAAAAAATATATTTCCCCACGAAAACGATTGCTTTTTATC  >  NC_000913_3_bme_pgi/354567‑354861                                                                                                                                                   |                                                                                                                                                     aGATCCGCCAGGCGATGGAAGAGTAGGTTATTGTCGGATGCGTCGCGCGGTGCATCCGGCACTGTGTGCCGATGCCTGATGCGACGCTGACGCGTTTTATCATGCCTACGGACCTGAACCGTAGGTCGGATAAGGCGCTCGCGTCGCAt                                                                                                                                                    >  1:189940/1‑149 (MQ=255)       gCCAGGCGATGGAAGAGTAGGTTATTGTCGGATGCGTCGCGCGGTGCATCCGGCACTGTGTGCCGATGCCTGATGCGACGCTGACGCGTTTTATCATGCCTACGGACCTGAACCGTAGGTCGGATAAGGCGCTCGCGTCGCATCCGacc                                                                                                                                              >  1:148761/1‑148 (MQ=255)       gCCAGGCGATGGAAGAGTAGGTTATTGTCGGATGCGTCGCGCGGTGCATCCGGCACTGTGTGCCGATGCCTGATGCGACGCTGACGCGTTTTATCATGCCTACGGACCTGAACCGTAGGTCGGATAAGGCGCTCGCGTCGCATCCGaca                                                                                                                                              <  1:581542/149‑1 (MQ=255)          aGGCGATGGAAGAGTAGGTTATTGTCGGATGCGTCGCGCGGTGCATCCGGCACTGTGTGCCGATGCCTGATGCGACGCTGACGCGTTTTATCATGCCTACGGACCTGAACAGTAGGTCGGATAAGGCTCTCGCGGCGCATCCGacatcc                                                                                                                                           >  2:796450/1‑146 (MQ=255)                  gAAGAGTAGGTTATTGTCGGACGCTTCGCGCGGTGCATCCGGCACTGTGTGCCGATGCCTGCTGCGACGCTGACGCGTTTTATCATGCCTACGGACCTGAACCGTAGGTCGGATAAGGCGCTCGCGTCGCATCCGACACCATGCTCAGa                                                                                                                                   <  1:220362/149‑1 (MQ=255)                   aaGAGTAGGTTATTGTCGGATGCGTCGCGCGGTGCATCCGGCACTGTGTGCCGATGCCTGATGCGACGCTGACGCGTTTTATCATGCCTACGGACCTGAACCGTAGGTCGGATAAGGCGCTCGCGTCGCATCCGACACCATGCTCAGAt                                                                                                                                  >  1:401800/1‑149 (MQ=255)                      attAGGTTATTGTCGGATGCGTCGTGCGGTGCATCCGGCACTGTGTGCCGATGCCTGATGCGACGCTGACGCGTTTTATCATGCCTACGGACCTGAACCGTAGGTCGGATAAGGCGCTCGCGTCGCATCCGACACCATGCTCAGATGcc                                                                                                                               <  1:724040/147‑1 (MQ=255)                      agTAGGTTATTGTCGGATGCGTCGCGCGGTGCATCCGGCACTGTGTGCCGATGCCTGATGCGACGCTGACGCGTTTTATCATGCCTACGGACCTGAACCGTAGGTCGGATAAGGCGCTCGCGTCGCATCCGACACCATGCTCAGATGcc                                                                                                                               <  1:724052/149‑1 (MQ=255)                      agTAGGTTATTGTCGGATGCGTCGCGCGGTGCATCCGGCACTGTGTGCCGATGCCTGATGCGACGCTGACGCGTTTTATCATGCCTACGGACCTGAACCGTACGTCGGATAAGGCGCCCGCGTCGCATCCGACACCCTGCTCTGATGcc                                                                                                                               >  2:203630/1‑149 (MQ=255)                        tAGGTTATTGTCGGATGCGTCGCGCGGTGCATCCGGCACTGTGTGCCGATGCCTGATGCGACGCTGACGCGTTTTATCATGCCTACGGACCTGAACCGTAGGTCGGATAAGGCGCTCGCGTCGCATCCGACACCATGCCCAGATCCCTg                                                                                                                             >  2:173235/1‑149 (MQ=255)                         aGGTTATTGTCGGATGCGTCGCGCGGTGCATCCGGCACTGTGTGCCGATGCCTGATGCGACGCTGACGCGTTTTATCATGCCTACGGACCTGAACCGTAGGTCGGATAAGCCGCTCGCGTCGCATCCGACACCATGCTCAGATGCCTGa                                                                                                                            <  2:710836/149‑1 (MQ=255)                           gTTATTGTCGGATGCGTCGCGCGGTGCATCCGGCACTGTGTGCCGATGCCTGATGCGACGCTGACGCGTTTTATCATGCCTACGGACCTGAACCGTAGGTCGGATAAGGCGCTCGCGTCGCCTCCGACCCCATGCTCAGATTCCTGATg                                                                                                                          >  2:137470/1‑149 (MQ=255)                              atggTCGGAGGCTTCGCGCGGTGGAGCCGGCACCGTGTGCCGCTGCCGGATGCGGCGCTGACGCGTTTTATCAGGCCTACGGACCTGAACCGTAGGTCGGATAAGGCGCTCGCGGCGCATCCGTCACCATGCTCAGATGCCTGATGCGa                                                                                                                       <  2:77451/146‑1 (MQ=37)                                      aTGCGTCGCGCGGTGCATCCGGCACTGTGTGCCGATGCCTGATGCGACGCTGACGCGTTTTATCATGCCTACGGACCTGAACCGTAGGTCGGATAAGGCGCTCGCGTCGCATCCGACACCATGCTCAGATGCCTGATGCGACGCTGAcg                                                                                                               >  1:351450/1‑149 (MQ=255)                                           tCGCGCGGTGCATCCGGCACTGTGTGCCGATGCCTGATGCGACGCTGACGCGTTTTATCATGCCTACGGCCCTGAACCGTAGCGCGGATAAGGCGCCCGCGTCGCGTCCGACAACATTGTCCCGTTCCTGCTGCGTCGCGGAcgacgct                                                                                                          >  2:147527/1‑144 (MQ=25)                                           tCGCGCGGTGCATCCGGCACTGTGTGCCGATGCCTGATGCGACGCTGACGCGTGTTGTCATGCCTACGGCCCTTAACCGTAGGTCGGATAAGGCGCTCGCGTCGCATCCGACACCATGCTCAGATGCCTGATGCGACGCGGACGCGTCt                                                                                                          >  2:133909/1‑149 (MQ=39)                                            tgcgcgGTGCCTCCCGCCCTCGGCGCCGAGGCCTGATGCGACTCTGACGCGTTTTAGCATGCCTACGGACCTGAATCGTAGGTCGGATAAGGCGCTCGCGTCGCATCCGACACCATGCTCAGATGCCTGATGCGACGCTGACGCGTCtt                                                                                                         <  1:332209/148‑1 (MQ=255)                                            cgcgcgGTGCATCCGGCAGTGTGTGCCGATGCCTGATTCGACGCTGACGCCGTTTATCATGCCTACGGACCTGAACCGTAGGCCGGAGAAGGCGCTCGCGTCGCATCCGACACCATGCTCAGATGCCTGATGCGACGCTGACGCGTCtt                                                                                                         <  1:332440/149‑1 (MQ=255)                                              cgcgGTGCATCCGGCACTGTGTGCCGATGCCTGATGCGACGCTGACGCGTTTTATCATGCCTACGGACCTGAACCGTAGGTCGGATAAGGCGCTCGCGTCGCATCCGACACCATGCTCAGATGCCTGATGCGACGCTGACGCGTCTTAt                                                                                                       <  1:587427/149‑1 (MQ=255)                                              cgcgGTGCATCCGGCACTGTGTGCCGATGCCTGATGCGACGCTGACGCGTTTTATCATGCCTACGGACCTGAACCGTAGGTCGGATAAGGCGCTCGCGTCGCATCCGACACCATGCTCAGATGCCTGATGCGACGCTGACGCGTCTTAt                                                                                                       <  1:710518/149‑1 (MQ=255)                                              cgcgGTGCATCCGGACCTGGGGGCCGATGCCGGAGGCGACGCTGGCGGGTTTTATCATGCCTACGGACCTGAACCGTAGGTCGGATAAGGCGCTCGCGTCGCATCCGACAGCATGCTCAGATGCCTGTTGCGACGCTGACGCGTCTTAt                                                                                                       <  2:711783/149‑1 (MQ=38)                                                     cATCCGGCACTGTGTGCCGATGCCTGATGCGACGCTGACGCGTTTTATCATGCCTACGGACCTGAACCGTAGGTCGGATAAGGCGCTCGCGTCGCATCCGACACCATGCTCAGATGCCTGATGCGACGCTGACGCGTCTTATCAGGCCt                                                                                                >  1:441411/1‑149 (MQ=255)                                                      aTCCGGCACTGTGTGCCGATGCCTGATGCGACGCTGACGCGTTTTATCATGCCTACGGACCTGAACCGTAGGTCGGATAAGGCGCTCGCGTCGCATCCGACACCATGCTCAGATGCCTGCTGCGACGCTGACGCGTCTTATCAGGCCTa                                                                                               >  2:410590/1‑149 (MQ=255)                                                       ctcgtcgcTGTGTGCCGATGCCTGATGCGACGCTGACGCGTTTTATCATGCCTACGGACCTGAACCGTAGGTCGGATAAGGCGCTAGCGCCGCATCCGACACCATGCTCAGTTGCCTGATGCGACGCTGACGGGTCTTATCAGGCCTAc                                                                                              >  2:747358/8‑149 (MQ=38)                                                         cGGCACTGTGTGCCGATGCCTGATGCGACGCTGACGCGTTTTATCATGCCTACGGACATGAACCGTAGGTCGGATAAGGCGCTCGCGTCGCATCCGACACCATGCTCAGATGCCTGATGCGACGCTGACGCGTCTTCTCAGGCCtgcac                                                                                            >  1:43999/1‑145 (MQ=255)                                                         cGGCACTGTGTGCCGATGCCTGATACGACGCTGACGCGTTTTATCATGCCTACGGACCTGAACCGTAGGTCGGATAAGGCGCTCGCGTCGCATCCGACACCATGCTCAGATGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTAccc                                                                                            >  1:700135/1‑149 (MQ=255)                                                             aCTGCGTGCCGATGCCTGATGCGACGCTGACGCGTTTTATCATGCCTACGGACCTGAACCGTAGGTCGGATAAGGCGCTCGCGTCGCATCCGACACCATGCTCAGATGCCTGATGCGCCGCTGCCGCGTCTTTTCAGGCCTACCCACTg                                                                                        >  2:735754/1‑149 (MQ=255)                                                                  gtgCCGATGCCTGATGCGACGCTGACGCGTTTTATCATGCCTACGGACCTGAACCGTAGGTCGGATAAGGCGCTCGCGTCGCATCCGACACCATGCTCAGATGCCTGATGCGCCGCTGACGCGTCTTATCAGGCCTACCCACTGttttt                                                                                   >  1:467482/1‑149 (MQ=255)                                                                   tgCCGATGCCTGATGCGACGCTGACGCGTTTTATCATGCCTACGGACCTGAACCGTAGGTCGGATAAGGCGCTCGCGTCGCATCCGACACCATGCACAGATGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACCCACTGTTTTTa                                                                                  <  1:534450/149‑1 (MQ=255)                                                                     ccGATGCCTGATGCGACGCTGACGCGTTTTATCATGCCTACGGACCTGAACCGTAGGTCGGATAAGGCGCTCGCGTCGCATCCGACACCATGCTCAGATGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACCCACTGTTTTTaca                                                                                >  2:483918/1‑149 (MQ=255)                                                                      cGATGCCTGATGCGACGCTGACGCGTTTTATCATGCCTACGGACCTGAACCGTAGGTCGGATAAGGCGCTCGCGTCGCATCCGACACCATGCTCAGATGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACCCACTGTTTTTacac                                                                               <  1:733276/149‑1 (MQ=255)                                                                             tggtGCGAGGCTGACGCGTTTTATCATGTCTCCGGAACTGGAGCGTAGGTGGGATTAGGCGCTCGCGTCGCATCCGAGACCATGCTGAGATGCCTGATGCGACGCGGATGGGTCTTGTCAGGCCTCGCCACTTTTTTTACACCaataat                                                                        >  2:497904/4‑149 (MQ=255)                                                                                   gACGCTGACGCGTTTTATCATGCCTACGGACCTGCACCGTAGGTCGGATAAGGCGCTCGCGTCGCATCCGACACCATGCTCAGATGCCTGATGCGACGCTAGCGCGTCTTATCAGGCCTACCCACTGTTTTTATCCCGATCATTTATcc                                                                  >  2:36383/1‑149 (MQ=37)                                                                                   gACGCTGACGCGTTTTATCATGCCTACGGACCTGAACCGTAGGTCGGATAAGGCGCTCGCGTCGCATCCGACACCATGCTCAGATGCCTGATGCGACGCTGACGCGTCTTATCTGGCCTACCCACTGTTTTTACTCCGATAAtttttat                                                                  >  2:404030/1‑147 (MQ=255)                                                                                    aCGCTGACGCGTTTTATCATGCCTACGGACCTGAACCGTAGGTCGGATAAGGCGCTCGCGTCGCATCCGACACCATGCTCAGATGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACCCACTGTTTTTACACCGATAATTTTTccc                                                                 <  2:553924/149‑1 (MQ=255)                                                                                            gcgTTTTATCATGCCTACGGACCTGAACCGTAGGTCGGATAAGGCGCTCGCGTCGCATCCGACACCATGCTCAGATGCCTGATGCGACGCTGACGCGTCTTATc                                                                                                      >  1:549751/1‑104 (MQ=255)                                                                                            gcgTTTTATCATGCCTACGGACCTGAACCGTAGGTCGGATAAGGCGCTCGCGTCGCATCCGACACCATGCTCAGATGCCTGATGCGACGCTGACGCGTCTTATc                                                                                                      <  2:549751/104‑1 (MQ=255)                                                                                                      aTGCCTACGGAGCTGAACCGTAGGTCGGATAAGGCGCTCGCGTCGCATCCGACACCATGCTCAGATGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACCCACTGTTTTTACACCGATAATTTTTCCCCCACCTTTTTGCACtcat                                               <  2:235874/149‑1 (MQ=255)                                                                                                       tGCCTACGGACCTGAACCGTAGGTCGGATAAGGCGCTCGCGTCGCATca                                                                                                                                                  <  2:208230/49‑2 (MQ=255)                                                                                                       tGCCTACGGACCTGAACCGTAGGTCGGATAAGGCGCTCGCGTCGCATca                                                                                                                                                  >  1:208230/1‑48 (MQ=255)                                                                                                          cTACGGACCTGAACCGTAGGTCGGATAAGGCGCTCGCGTCGCATCCGACACCATGCTCAGATGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACCCACTGTTTTTACACCGATAATTTTTCCCCCCCCTTTTTGCCAtcattctt                                           >  2:63423/1‑147 (MQ=255)                                                                                                              ggACCTGAACCGTAGGTCGGATAAGGCGCTCGCGTCGCATCCGACACCATGCTCAGATGCCTGATACGACGCTGACGCGTCTTATCAGGCCTACCCACTGTTTTTCCACCGCTAATTTTTCCCCCCCCTTTTTGCACTCATTCATTTaa                                       >  1:222211/1‑149 (MQ=39)                                                                                                               gACCTGAACCGTAGGTCGGATAAGGCGCTCGCGTCGCATCCGACACCATGCTCAGATGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACCCACTGTTTTTACACCGATAATTTTTCCCCCACCTTTTTGCACTCATTCATATaaa                                      <  2:537604/149‑1 (MQ=255)                                                                                                                aCCTGAACCGTAGGTCGGATAAGGCGCTCGCGTCGCATCCGACACCATGCTCAGATGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACCCACTGTTTTTACACCGATAATTTTTCCCCCACCTTTTTGCACTAATTCATATaaaa                                     >  2:525042/1‑149 (MQ=255)                                                                                                                    gAACCGTAGGTCGGATAAGGCGCTCGCGTCGCATCCGACACCATGCTCAGATGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACCCACTGTTTTTACACCGATAATTTTTCCCCCACCTTTTTGCACTCATTCATATAAAAAatc                                 >  1:402709/1‑148 (MQ=255)                                                                                                                                      ggCGCTCGCGTCGCATCCGACACCATGCTCAGATGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACCCACTGTTTTTa                                                                                  >  1:655009/1‑82 (MQ=255)                                                                                                                                      ggCGCTCGCGTCGCATCCGACACCATGCTCAGATGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACCCACTGTTTTTa                                                                                  <  2:655009/82‑1 (MQ=255)                                                                                                                                       gcgcTGGCGTCGCAGCCGACACCATGCTCAGATGCCTGACGCGACGCTGACGCGTCTTATCAGGCCTACCCACTGTTTTTACACCGATAATTTTTCCCCCACCTTTTTGCACTCATTCATATAAAAAATATATTTCCCCACGAAAACGa              <  1:203630/149‑1 (MQ=255)                                                                                                                                         gcTCGCCTCGCATCCGCCACCATGCTCAGATGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACCCACTGTTTTTACACCGATAATTTTTCCCCCACCTTTTTGCACTCATTCATATAAAAAATATATTTCCCCACGAAAACGAtt            <  1:479733/149‑1 (MQ=255)                                                                                                                                             gcgTCGCATCCGACACCATGCTCAGATGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACCCACTGTTTTTACACCGATAATTTTTCCCCCACCTTTTTGCACTCATTCATATAAAAAATATATTTCCCCAc                      <  1:196144/135‑1 (MQ=255)                                                                                                                                             gcgTCGCATCCGACACCATGCTCAGATGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACCCACTGTTTTTACACCGATAATTTTTCCCCCACCTTTTTGCACTCATTCATATAAAAAATATATTTCCCCAc                      >  2:196144/1‑135 (MQ=255)                                                                                                                                             gcgTCGCATCCGACACCATGCTCAGATGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACCCACTGTTTTTACACCGATAATTTTTCCCCCACCTTTTTGCACTCATTCATATAAAAAATATATTTCCCCACGAAAACGATTGCtt        >  2:644925/1‑149 (MQ=255)                                                                                                                                                   cATCCGACACCATGCTCAGATGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACCCACTGTTTTTACACCGATAATTTTTCCCCCACCTTTTTGCACTCATTCATATAAAAAATATATTTCCCCACGAAAACGCGTGCTTTTTATc  >  2:27454/1‑149 (MQ=255)                                                                                                                                                   |                                                                                                                                                     AGATCCGCCAGGCGATGGAAGAGTAGGTTATTGTCGGATGCGTCGCGCGGTGCATCCGGCACTGTGTGCCGATGCCTGATGCGACGCTGACGCGTTTTATCATGCCTACGGACCTGAACCGTAGGTCGGATAAGGCGCTCGCGTCGCATCCGACACCATGCTCAGATGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACCCACTGTTTTTACACCGATAATTTTTCCCCCACCTTTTTGCACTCATTCATATAAAAAATATATTTCCCCACGAAAACGATTGCTTTTTATC  >  NC_000913_3_bme_pgi/354567‑354861

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.