New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913_3_bme_pgi	1686709 =	40 (0.870)	4 (0.090)	4/272	6.3	9.0%	intergenic (‑121/+22)	fumC/fumA	fumarate hydratase (fumarase C),aerobic Class II/fumarate hydratase (fumarase A), aerobic Class I
	?	NC_000913_3_bme_pgi	1686725 =	43 (0.980)					intergenic (‑137/+6)	fumC/fumA	fumarate hydratase (fumarase C),aerobic Class II/fumarate hydratase (fumarase A), aerobic Class I
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

TGTATTCATGACCTGCTCCTCACCTGATTAATTTTTTCTTTCTGTTTTGCTTTCGTTAAGCAACTTTTAGCTCACTTATTATTTACCATTTGATAACAAATGTTTGGTCTTTCGTGCCATGTAAAAAAACCGCCCCGAAGGGCGGCTCTGTTTATTTCACACAGCGGGTGCATTGTGTGAGTTGTATCTGCTGGAAGAAGTCATTTCCTTTATCATCCACAAGGATAAACGCCGGGAAATCTTCCACTTCAATTTTCCAGATGGCTTCCATTCCCAGTTCCGGATATTCAA  >  NC_000913_3_bme_pgi/1686580‑1686870                                                                                                                                                  |                                                                                                                                                  tGTATTCATGACCTGCTCCTCACCTGATTAATTTTTTCTTTCTGTTTTGCTTTCGTTAAGCAACTTTTAGCTCACTTATTATTTACCATTTGATAACAAATGTTTGGTCTTTCGTGCCATGTAAAAAAACCGCCCCGAAGGGCGGctct                                                                                                                                                >  2:267163/1‑149 (MQ=255)      tCATGACCTGCTCCTCACCTGATTAATTTTTTCTTTCTGTTTTGCTTTCGTTAAGCAACTTTTAGCTCACTTATTATTTACCATTTGATAACAAATGTTTGGTCTTTCGTGCCATGTAAAAAAACCGCCCCGAAGGGCGGCTCTGTTTa                                                                                                                                           <  1:366816/149‑1 (MQ=255)       cATGACCTGCTCCTCACCTGATTAATTTTTTCTTTCTGTTTTGCTTTCGTTAAGCAACTTTTAGCTCACTTATTATTTACCATTTGATAACAAATGTTTGGTCTTTCGTGCCATGTAAAAAAACGGCCCCGAAGGGCGGCTCTGTTTAt                                                                                                                                          <  1:701910/149‑1 (MQ=255)        aTGACCTGCTCCTCACCTGATTAATTTTTTCTTTCTGTTTTGCTTTCGTTAAGCAACTTTTAGCTCACTTATTATTTACCATTTGATAACAAATGTTTGGTCTTTCGTGCCATGTAAAAAAACCGCCCCGAAGGGCGGCTCTGTTTAtt                                                                                                                                         >  2:101515/1‑149 (MQ=255)             cTGCTCCTCACCTGATTAATTTTTTCTTTCTGTTTTGCTTTCGTTAAGCAACTTTTAGCTCACTTATTATTTACCATTTGATAACAAATGTTTGGTCTTTCGTGCCATGTAACAAAACCGCCCCGAAGGGCGGCTCTGTTTATTTccca                                                                                                                                    >  1:515653/1‑149 (MQ=255)             cTGCTCCTCACCTGATTAATTTTTTCTTTCTGTTTTGCTTTCGTTAAGCAACTTTTAGCTCACTTATTATTTACCATTTGATAACAAATGTTTGGTCTTTCGTGCCATGTAAAAAAACCGCCCCGAAGGGCGGCTCTGTTTATTTcaca                                                                                                                                    >  2:251628/1‑149 (MQ=255)             cTGCTCCTCACCTGATTAATTTTTTCTTTCTGTTTTGCTTTCGTTAAGCAACTTTTAGCTCACTTATTATTTACCATTTGATAACAAATGTTTGGTCTTTCGTGCCATGTAAAAAAACCGCCCCGAAGGGCGGCTCTGTTTATTTcaca                                                                                                                                    <  1:251628/149‑1 (MQ=255)                    tcACCTGATTAATTTTTTCTTTCTGTTTTGCTTTCGTTAAGCAACTGTTAGCTCTTTTATTATTTACCATTTGATAACAAATGTTTGGTCTTTCGTTCGATCTAAAAAACCCGCCCCGAAGGGCGGCTCTGTCTAATTCCAACAGCggg                                                                                                                             >  2:87950/1‑149 (MQ=255)                          gATTAATTTTTTCTTTCTGTTTTGCTTTCGTTAAGCAACTTTTAGCTCACTTATTATTTACCATTTGATAACAAATGTTTGGTCTTTCGTGCCATGTAAAAAAACCGCCCCGAAGGGCGGCTCTGTTTATTTCACACAGCGGGTGCAtt                                                                                                                       <  1:647635/149‑1 (MQ=255)                                ttttttCTTTCTGTTTTGCTTTCGTTAAGCAACTTTTAGCTCACTTATTATTTACCATTTGATAACAAATGTTTGGTCTTTCCTGCTTGTTATAAAAACCGCCCCGAAGGGCGGCTCTGTTTATTTCACACAGCGGGTGCATTGTGTGa                                                                                                                 >  1:594421/1‑149 (MQ=255)                                           tGTTTTGCTTTCGTTAAGCAACTTTTAGCTCACTTATTATTTACCATTTGATAACAAATGTTTGGTCTTTCGTGCCATGTAAAAAAACCGCCCCGAAGGGGGGCTCTGTTTCTTTCACACAGCGGGTGCATGGGGTGAGGTGTAGctgc                                                                                                      >  1:248010/1‑149 (MQ=255)                                             ttttGCTTTCGTTAAGCAACTTTTAGCTCACTTATTATTTACCATTTGATAACAAATGTTTGGTCTTTCGTGCCATGTAAAAAAACCGCCCCGAAGGGCGGCTCTGTTTATTTCACACAGCGGGTGCATTGTGTGAGTTGTATctgctg                                                                                                    >  1:637172/1‑149 (MQ=255)                                             ttttGCTTTCGTTAAGCAACTTTTAGCTCACTTATTATTTACCATTTGATAACAAATGTTTGGTATTTCGTGCCATGTAAAAAAACCGCCCCGAAGGGCGGCTATGTTTATTTCACACAGCGGGTGCATTGGTTGAGTTGTAGctgctg                                                                                                    >  1:695224/1‑149 (MQ=255)                                             ttttGCTTGTGTTAAGCAACTTTTAGCTCAGTTCTTATTTACCATTTGATAACAAATGTTTGGTCTTTCGTGCCATGTACCAAAACCGCCCCGAAGGGCGGCTCTGTTTATTTCACACAGCGGGTGCATTGTGTGAGTTGTATctgctg                                                                                                    <  2:220959/149‑1 (MQ=255)                                                   tttCGTTAAGCAACTTTTAGCTCACTTATTATTTACCATTTGATAACAAATGTTTGGTCTTTCGTGCCATTTAATAAAACCGCCCCGAAGGGCGGCTCTGTTTATTTCACACAGCGGGTGCATTGTGTGAGTTGTATCTGCTGgaagaa                                                                                              >  2:725710/1‑149 (MQ=255)                                                      cGTTAAGCAACTTTTAGCTCACTTATTATTTACCATTTGATAACAAATGTTTGGTCTTTCGTGCCATGTAAAAAAACCGCCCCGAAGGGCGGCTCTGTTTATTTCACACAGCGGGTGCATTGTGTGAGTTGTATCTGCTGGAAGAAGTc                                                                                           <  2:111052/149‑1 (MQ=255)                                                           aGCAACTTTTAGCTCACTTATTATTTACCATTTGATAACAAATGTTTGGTCTTTCGTGCCATGTAAAAAAACCGCCCCGAAGGGCGGCTCTGTTTATTTCACACAGCGGGTGCATTGTGTGAGTTGTATCTGCTGGAAGAAGTCATTTc                                                                                      <  1:101515/149‑1 (MQ=255)                                                              aaCTTTTAGCTCACTTATTAATTACCATTTGATAACAAATGTTTGGTCTTTCGTGCCATGTAAAAAAACCGCCCCGAAGGGCGGCTCTGTTTATTTCACACAGCGGGTGCATTGTGTGAGTTGTATCTGCTGGAAGAAGTCATTTCCtt                                                                                   <  2:586279/149‑1 (MQ=255)                                                                   ttAGCTCACTTATTATTTACCATTTGATAACAAATGTTTGGTCTTTCGTGCCATGTAAAAAAACCGCCCCGAAGGGCGGCTCTGTTTATTTCACACAGCGGGTTCATTGTGTGAGTTGTATCTGCTGGAAGAAGTCATTTCCTTTatca                                                                              >  1:169445/1‑149 (MQ=255)                                                                         cACTTATTATTTACCATTTGATAACAAATGTTTGGTCTTTCGTGCCATGTAAAAAAACCGCCCCGAAGGGCGGCTCTGTTTATTTCACACAGCGGGTGCATTGTGTGAGtt                                                                                                              >  2:196026/1‑111 (MQ=255)                                                                         cACTTATTATTTACCATTTGATAACAAATGTTTGGTCTTTCGTGCCATGTAAAAAAACCGCCCCGAAGGGCGGCTCTGTTTATTTCACACAGCGGGTGCATTGTGTGAGtt                                                                                                              <  1:196026/111‑1 (MQ=255)                                                                            ttattaTTTACCATTTGATAACAAATGTTTGGTCTTTCGTGCCATGTAAAAAAACCGCCCCGAAGGGCGGCTCTGTTTATTTCACACAGCGGGTGCATTGTGTGAGTTGTATCTGCTGGAAGAAGTCATTTCCTTTATCATCCACAAgg                                                                     >  1:416194/1‑149 (MQ=255)                                                                                tattTACCATTTGATAACAAATGTTTGGTCTTTCGTGCCATGTAAAAAAACCGCCCCGAAGGGCGGCTCTGTTTATTTCACACAGCGGGTGCATTGTGTGAGTTGTATCTGCTGGAAGAAGTCATTTCCTTTATCATCCACAAGGATaa                                                                 >  1:18047/1‑149 (MQ=255)                                                                                tattTACCATTTGATAACAAATGTTTGGTCTTTCGTGCCATGTAAAAAAACCGCCCCGAAGGGCGGCTCTGTTTATTTCACACAGCGGGTGCATTGTGTGAGTTGTATCTGCTGGAAGAAGTCATTTCCTTTATCATCCACAAGGATaa                                                                 >  2:324305/1‑149 (MQ=255)                                                                                      ccATTTGATAACAAATGTTTGGTCTTTCGTGCCATGTAAAAAAACCGCCCCGAAGGGCGGCTCTGTTTATTTCACACAGCGTGTGCATTGTGTGAGTTGTATCTGCTGGAAGAAGTCATTTCCTTTATCATCCACAAGGATAAACGCCg                                                           <  1:267163/149‑1 (MQ=255)                                                                                                  aaaTGTTTGGTCTTTCGTGCCATGTAAAAAAACCGCCCCGAAGGGCGGCTCTGTTTATTTCACACAGCGGGTGCATTGTGTGAGTTGTATCTGCTGGAAGAAGTCATTTCCTTTATCATCCACAAGGATAAACGCCGGGAAATCTTCCa                                               <  2:637172/149‑1 (MQ=255)                                                                                                   aaTGTTTGGTCTTTCGTGCCATGTAAAAAAACCGCCCCGAAGGGCGGCTCTGTTTATTTCACACAGCGGGTGCATTGTGTGAGTTGTATCTGCTGGAAGAAGTCATTTCCTTTATCATCCACAAGGATAAACGCCGGGAAATCTTCCAc                                              <  1:324305/149‑1 (MQ=255)                                                                                                        ttGGTCTTTCGTGCCATGTAAAAAAACCGCCCCGAAGGGCGGCTCTGTTTATTTCACACAGCGGGTGCATTGTGTGATTGGTATctgct                                                                                                     <  2:300660/89‑1 (MQ=255)                                                                                                        ttGGTCTTTCGTGCCATGTAAAAAAACCGCCCCGAAGGGCGGCTCTGTTTATTTCACACAGCGGGTGCATTGTGTGAGTTGTATctgct                                                                                                     >  1:300660/1‑89 (MQ=255)                                                                                                          gctCTTTCGTGCCATGTAGAAAGACAGTCCCGAAGGGCGGCTTCGTTTATTTCACACGGCGGGTGCATTGTGTGAGTTGTATCTGCTGCAAGAACTCATTTCCTTTCTCATCCACAAGGATAAACGCCGCGAAATCTTCCACTTCAAtt                                       <  2:348085/147‑1 (MQ=255)                                                                                                            tCTTTCGTGCCATGTAAAAAAACCGCCCCGAAGGGCGGCTCTGTTTATTTCACACAGCGGGTGCATTGTGTGAGTTGTATCTGCTGGAAGAAGTCATTTCCTTTATCATCCACAAGGATAAACGCCGGGAAATCTTCCACTTCAAtttt                                     >  1:173585/1‑149 (MQ=255)                                                                                                               ttCGTGCCATGTAAAAAAACCGCCCCGAAGGGCGGCTCTGTTTATTTCACACAGCGGGTGCATTGTGTGAGTTGTATCTGCTGGAAGAAGTCATTTCCTTTATCATCCACAAGGATAAACGCCGGGAAATCTTCCACTTCAATTTTCCa                                  <  1:773101/149‑1 (MQ=255)                                                                                                                tCGTGCCATGTAAAAAAACCGCCCCGAAGGGCGGCTCTGTTTATTTCACACAGCGGGTGCATTGTGTGAGTTGTATCTGCTGGAAGAAGTCATTTCCTTTATCATCCACAAGGATAAACGCCGGGAAATCTTCCACt                                             <  2:709024/137‑1 (MQ=255)                                                                                                                tCGTGCCATGTAAAAAAACCGCCCCGAAGGGCGGCTCTGTTTATTTCACACAGCGGGTGCATTGTGTGAGTTGTATCTGCTGGAAGAAGTCATTTCCTTTATCATCCACAAGGATAAACGCCGGGAAATCTTCCACt                                             >  1:709024/1‑137 (MQ=255)                                                                                                                  gtaccATGTAACAAAACGGCCCTGACGGGCGGCTCTGTTTATTTCGCACCGCGGGTGTATTGTGTGAGTTGTATCTTCTGGAAGAAGTCATTTCCTTTATCATCCACAAGGATAAACGCCGGGAGATCTTCCACTTCAATTTTCCAGAt                               <  2:484836/146‑1 (MQ=255)                                                                                                                              aaaaCCGCCCCGAAGGGCGGCTCTGTTTATTTCACACAGCGGGTGCATTGTGTGAGTTGTATCTGCTGGAAGAAGTCATTTCCTTTATCATCCACAAGGATAAACGCCGGGAAAACTTCCCCTTCAATTTTCCAGATGGCTTCCATTcc                   >  2:263112/1‑149 (MQ=255)                                                                                                                                    gCCCCGACGGCCGGCTCTGTTTATTTCACACAGCGGGTGCATTGTGTGAGTTGTATCTGCTGGAAGAAGTCATTTCCTTTATCATCCACAAGGATAAACGCCGGGAAATCTTCCACTCCAATTTTCCAGATGGCTTCCATACCCactgc             >  2:345847/1‑145 (MQ=37)                                                                                                                                    gCCCCGAAGTGCGGGTCTGTTTATTTCACACGGCGGGTGCATTGTGTGAGTTGTATCTGCTGGAAGAAGTCATTGCCTTTATCATCCACAAGGATAAACGCCGGGAAATCTTCCACTTCAATTTTCCAGATGGCTTCCATTCCCAGTTc             <  2:787489/149‑1 (MQ=255)                                                                                                                                      cccGAAGGGCGGCTCTGTTTATTTCACACAGCGGGTGCATTGTGTGAGTTGTATCTGCTGGAAGAAGTCATTTCCTTTATCATCCACAAGGATAAACGCCGGGAAATCTTCCACTTCAAtt                                       <  2:181513/121‑1 (MQ=255)                                                                                                                                      cccGAAGGGCGGCTCTGTTTATTTCACACAGCGGGTGCATTGTGTGAGTTGTATCTGCTGGAAGAAGTCATTTCCTTTATCATCCACAAGGATAAACGCCGGGAAATCTTCCACTTCAAtt                                       >  1:181513/1‑121 (MQ=255)                                                                                                                                      cccGAAGGGCGGCTCTGTTTATTTCACACAGCGGGTGCATTGTGTGAGTTGTATCTGCTGGAAGAAGTCATTTCCTTTATCATCCACAAGGATAAACGCCGGGAAATCTTCCACTTCAATTTTCCAGATGGCTTACATTACCactgcag           >  1:349837/1‑143 (MQ=255)                                                                                                                                        cGAAGGGCGGCTCTGTTTATTTCACACAGCGGGTGCATTGTGTGAGTTGTATCTGCTGGCAGAAGTCATTTCCTTTATCATCCACAAGGATAAACGCCGGGAAATCTTCCCCTTCAATTTTCCGGCTGTCTTCCATTCCCAGTGCCGGa         >  2:337436/1‑149 (MQ=38)                                                                                                                                        cGAAGGGCGGCTCTGTTTATTTCACACAGCGGGTGCATTGTGTGAGTTGTATCTGCTGGAAGAAGTCATTTCCTTTATCATCCACAAGGATAAACGACGGGAACTTTTCCACTTCAATTTTCCAGATGGCTTCCATTCCCAGTTCCGGa         >  1:247470/1‑149 (MQ=255)                                                                                                                                           aggcctgcTCTGTTCATTCCACACAGCGGGTGCATTGTGTGAGTTGGATCTGCTGGAAGAAGGCATTTCCTTTATCATCCACAAGGATAAACGCCGGGAAATCTTCCACTTCAATTTTCCAGATGGCTTCCATTCCCAGTTCCGGatat      <  2:12108/143‑1 (MQ=37)                                                                                                                                               cggcTCTGTTTATTTCACACTGCGGGTGCATTGTGTGAGTTGTATCTGCTGGAACAAGTCATTTCCTTTATCATCCACAAGGATAAACGCCGGGAAATCTTCCACTTCTATTCTCCAGATGGCTTCCATTCCCAGTTCCGGATATTCaa  <  2:615203/149‑1 (MQ=255)                                                                                                                                                  |                                                                                                                                                  TGTATTCATGACCTGCTCCTCACCTGATTAATTTTTTCTTTCTGTTTTGCTTTCGTTAAGCAACTTTTAGCTCACTTATTATTTACCATTTGATAACAAATGTTTGGTCTTTCGTGCCATGTAAAAAAACCGCCCCGAAGGGCGGCTCTGTTTATTTCACACAGCGGGTGCATTGTGTGAGTTGTATCTGCTGGAAGAAGTCATTTCCTTTATCATCCACAAGGATAAACGCCGGGAAATCTTCCACTTCAATTTTCCAGATGGCTTCCATTCCCAGTTCCGGATATTCAA  >  NC_000913_3_bme_pgi/1686580‑1686870

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.