New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913_3_bme_pgi	= 2597712	NA (NA)	4 (0.110) +GCCTACATATCGACGATGATCAAGCTTTCCT	3/222	6.0	NA	noncoding (40/46 nt)	REP181 (repetitive extragenic palindromic) element; contains 2 REP sequences	REP181 (repetitive extragenic palindromic) element; contains 2 REP sequences
	?	NC_000913_3_bme_pgi	4235376 =	NA (NA)					intergenic (‑2143/‑531)	lysC/yjbE	lysine‑sensitive aspartokinase 3/extracellular polysaccharide production threonine‑rich protein
Rejected: Coverage evenness skew score above cutoff.

GTGCTGTATACGGTTTTCGCTTTACCACGATACAACTCAGCTTGCTTTTGCATCTTTATCACTCCTGGGTGTGAATTAACGTTTTAAAATCTTTTGCTGTCTGGTGTGCCGGATGTTTTGTCGGATGCGGCGTGAACGCCTTATCCGAACTACGTCCGACAAACAAATTTCGTGCGAATTACCGCTAAAATCGCGTTTTCCTGCAGACGCACACGTTTGCGTATCATATCAGAAAAAAGGGCCGGATGATTCCAGCCCTGTATTTTTACTTGCTAAACGCAGCCTGGAAGACAGC  >  NC_000913_3_bme_pgi/2597566‑2597860                                                                                                                                                   |                                                                                                                                                     gTGCTGCAGCCGGTTTTCGCTTTTCCACTATACAACTCAGCTCGGTTTTGCATCTTTATCACTCCTGGGTGTGAATTAACGTTTTACAATCTTTTGCTGTCTGGTGTGCCGGATGTTTTGTCGGATGCGGCGTGAACGCCTTATCCGaa                                                                                                                                                    <  1:305569/149‑1 (MQ=255)  tGCTGTATACGGTTTTCGCTTTACCACGATACAACTCAGCTTGCTTTTGCCGATATATCACTCCTCGGCGTGAATTAACGTTTTAAAATCTTTTGCTGTCTGGTGTGCCGGATGTTTTGTCGGATGCGGCGTGAACGCCTTATCCGAAc                                                                                                                                                   <  1:159206/149‑1 (MQ=255)  tGCTGTATACGGTTTTCGCTTTACCACGATACAACTCAGCTTGCTTTTGCATCTTTATCACTCCTGGGTGTGAATTAACGTTTTAAAATCTTTTGCTGTCTGGTGTGCCGGATGTTTTGTCGGATGCGGCGTGAACGCCTTATCCGAAc                                                                                                                                                   >  1:673501/1‑149 (MQ=255)     tGTATACGGTTTTCGCTTTACCACGATACAACTCAGCTTGCTTTTGCATCTTTATCACTCCTGGGTGTGAATTAACGTTTTAAAATCTTTTGCTGTCTGGTGTGCCGGATGTTTTGTCGGATGCGGCGTGAACGCCTTATCCGAACTAc                                                                                                                                                <  2:463306/149‑1 (MQ=255)        ataCGGTTTTCGCTTTACCACGATACAACTCAGCTTGCTTTTGCATCTTTATCACTCCTGGGTGTGAATTAACGTTTTAAAATCTTTTGCTGTCTGGTGTGCCGGATGTTTTGTCGGATGCGGCGTGAACGCCTTATCCGAACTACGTc                                                                                                                                             <  1:672202/149‑1 (MQ=255)          aCGGTTTTCGCTTTACCACGATACAACTCAGCTTGCTTTTGCATCTTTATCACTCCTGGGTGTGAATTAACGTTTTAAAATCTTTTGCTGTCTGGTGTGCCGGATGTTTTGTCGGATGCGGCGTGAACGCCTTATCCGAACTACGTCCg                                                                                                                                           >  2:753095/1‑149 (MQ=255)          aCGGTTTTCGCTTTACCACGATACAACTCAGCTTGCTTTTGCATCTTTATCACTCCTGGGTGTGAATTAACGTTTTAAAATCTTTTGCTGTCTGGTGTGCCGGATGTTTTGTCGGATGCGGCGTGAACGCCTTATCCGAACTACGTCCg                                                                                                                                           >  2:565056/1‑149 (MQ=255)                ttCGCTTGACCACGATACACCTCAGCTTGCTTTTGCATCTTTATCACTCCTGGGTGTGAATTAACGTTTTAAAATCCTTTGCGGTCTGGTGTGCCGGATGTTATGATGGATTCGGCGTGAACGCCTTATCCGAACTACGTCCGacaaac                                                                                                                                     <  1:32500/149‑1 (MQ=255)                    cTTTACCACGATACAACTCAGCTTGCTTTTGCATCTTTATCACTCCTGGGTGTGAATTAACGTTTTAAAATCTTTTGCTGTCTGGTGTGCCGGATGTTTTGTCGGATGCGGCGTGAACGCCTTATCCGAACTACGTCCGAcaaacaaag                                                                                                                                 >  1:143524/1‑148 (MQ=255)                        aCCACGATACAACTCAGCTTGCTTTTGCATCTTTATCACTCCTGGGTGTGAATTAACGTTTTAAAATCTTTTGCTGTCTGGTGTGCCGGATGTTTTGTCGGATGCGGCGTGAACGCCTTATCCGAACTACGTCCGACAAACAAATTTCg                                                                                                                             <  2:775772/149‑1 (MQ=255)                               tACAACTCAGCTTGCTTTTGCATCTTTATCACTCCTGGGTGTGAATTAACGATTTAAAATCATTTGCTGTCTGGTGTGCCGGATGTTTTGTCGGATGCGGCGTGCACGCCTTCTCCGACCTACGTCCGACAAACAACTTTCGTCCGAAt                                                                                                                      >  2:812782/1‑149 (MQ=255)                                  aaCTCAGCTTGCTTTTGCATCTTTATCACTCCTGGGTGTGAATTAACGTTTTAAAATCTTTTGCTGTCTGGTGTGCCGGATGTTTTGTCGGATGCGGCGTGAACGCCTTATCCGAACTACGTCCGACAAACAAATTTCGTGCGAATTAc                                                                                                                   <  1:256628/149‑1 (MQ=255)                                  aaCTCAGCTTGCTTTTGCATCTTTATCACTCCTGGGAGAGAATCAACGTTTACAAATATTCTGTTGTCTGCTATGACGAATGTTTTGTCGGGAGCTGCGCGACCGCCATTTCCGAACTACGCCCGACAAACAAATTCCGTCCGAAttcc                                                                                                                   >  2:617946/1‑147 (MQ=255)                                       aGCTTGCTTTTGCATCTTTATCACTCCTGGGTGTGAATTAACGTTTTAAAATCTTTTGCTGTCTGGTGTGCCGGATGTTTTGTCGGATGCGGCGTGAACGCCTTATCCGAACTACGTCCGACAAACAAATTTCGTGCGAATTACCGCTa                                                                                                              >  1:87281/1‑149 (MQ=255)                                          ttgcttTTGCATCTTTATCACTCCTGGGTGTGAATTAACGTTTTAAAATCTTTTGCTGTCTGGTGTGCCGGATGTTTTGTCGGATGCGGCGTGAACGCCTTATCCGAACTACGTCCGACAAACAAATTTCGTGCGAATTACCGCTaaaa                                                                                                           >  1:430180/1‑149 (MQ=255)                                            gcttTTGCATCTTTATCACTCCTGGGTGTGAATTAACGTTTTAAAATCTTTTGCTGTCTGGTGTGCCGGATGTTTTGTCGGATGCGGCGTGAACGCCTTATCCGAACTACGTCCGACAAACAAATTTCGTGCGAATTACCGCTAAAATc                                                                                                         >  2:259411/1‑149 (MQ=255)                                                    aTCTTTATCACTCCTGGGTGTGAATTAACGTTTTAAAATCTTTGGGTGTCTGGTGTACCCGATCCTTTGTCGGATGCGGCGTGAACGCCTTATCCGAACTACGTCCGACAAACAAATTTCGTGCGAATTACCGCTAAAATCGCGTTTTc                                                                                                 >  1:747375/1‑149 (MQ=39)                                                        ttATCACTCCTGGGTGTGAATTAACGTTTTAAAATCTTTTGCTGTCTGGTGTGCCGGATGTTTTGTCGGATGCGGCGTGAACGCCTTATCCGAACTACGTCCGACAAACAAATTTCGTGCGAATTACCGCTAAAATCGCGTTTTCCTGc                                                                                             >  1:236669/1‑149 (MQ=255)                                                               tCCTGGGTGTGAATTAACGTTTTAAAATCTTTTGCTGTCTGGTGTGCCGGATGTTTTGTCGGATGCGGCGTGAACGCCTTATCCGAAc                                                                                                                                                   >  1:484569/1‑88 (MQ=255)                                                               tCCTGGGTGTGAATTAACGTTTTAAAATCTTTTGCTGTCTGGTGTGCCGGATGTTTTGTCGGATGCGGCGTGAACGCCTTATCCGAAc                                                                                                                                                   <  2:484569/88‑1 (MQ=255)                                                               tCCTGGGTGTGAATTAACGTTTTAAAATCTTTTGCTGTCTGGTGTGCCGGATGTTTTGTCGGATGCGGCGTGAACGCCTTATCCGAACTACGTCCGACAAACAAATTTCGTGCGAATTACCGCTAAAATCGCGTTTTCCTGCAGACGca                                                                                      >  1:494367/1‑149 (MQ=255)                                                                agcggtggtgAATTAACGTTTTAAAATCTTTTGCTGTCCGGTGTGCCGGATGTTTTGTCGGATGCGGCGTGAACGCCTTATCCGAACTACGTCCGACAAACAAATTTCGTGCGAATTACCGCTAAAATCGCGTTTTCCTGCAGACGcac                                                                                     <  2:797284/142‑1 (MQ=255)                                                                      tgtgAATTAACGTTTTAAAATCTTTTGCTGTCTGGTGTGCCGGATGTTTTGTCGGATGCGGCGTGAACGCCTTATCCGAACTACGTCCGACAAACAAATTTCGTGCGAATTACCGCTAAAATCGCGTTTTCCTGCAGACGCACACGttt                                                                               <  2:51477/149‑1 (MQ=255)                                                                           aTTAACGTTTTAAAATCTTTTGCTGTCTGGTGTGCCGGATGTTTCGTCGGATGCGGCGTGAACGCCTTATCCGAACTACGTCCGACAAACAAATTTCGTGCGAATTACCGCTAAAATCGCGTTTTCCTGCAGACGCACACGTTTGCGta                                                                          <  1:633261/149‑1 (MQ=255)                                                                            ttAACGTTTTAAAATCTTTTGCTGTCTGGTGTGCCGGATTTTTTGTCGGATGCGGCGTGAACGCCTTATCCGAACTACTTCCCACAAACAAATTTCGTGCGAATTACCGCTAAAATCGCGTTTTCCTGCAGACGCACACGTTTGCGtat                                                                         <  1:669685/149‑1 (MQ=255)                                                                            ttAACGTTTTAAAATCTTCTGCTGTCTGGTGTCCCGGATGTTTTGTCGGATGCGGCGTGAACGCCTTATCCGAACTACGTCCGACAAACAAATTTCGTGCGAATTACCGCTAAAATCGCGTTTTCCTGCAGACGCACACGTTTGCGtat                                                                         <  1:253704/149‑1 (MQ=255)                                                                                     tAAAATCTTTTGCTGTCTGGTGTGCCGGATGTTTTGTCGGATGCGGCGTGAACGCCTTATCCGAACTACGTCCGACAAACAAATTTCGTGCGAATTACCGCTAAAATCGCGTTTTCCTGCAGACGCACACGTTTGCGTATCATATCAGa                                                                >  1:554910/1‑149 (MQ=255)                                                                                      aaaaTCTTTTGCTGTCTGGTGTGCCGGATGTTTTGTCGGATGCGGCGTGAACGCCTTATCCGAACTACGTCCGACAAACAAATTTCGTGCGAATTACCGCTAAAATCGCGTTTTCCTGCAGACGCACACGTTTGCGTATCATATCAGaa                                                               >  2:437434/1‑149 (MQ=255)                                                                                        aaTCTTTTGCTGTCTGGTGTGCCGGATGTTTTGTCGGATGCGGCGTGAACGCCTTATCCGAACTACGTCCGACAAACAAATTTCGTGCGAATTACCGCTAAAATCGCGTTTTCCTGCAGACGCACACGTTTGCGTATCATATCAGaaaa                                                             >  2:280275/1‑149 (MQ=255)                                                                                                  tGTCTGGTGTGCCGGATGTTTTGTCGGATGCGGCGTGAACGCCTTATCCGAACTACGTCCGACAAACAAATTTCGTGCGAATTACCGCTAAAATCGCGTTTTCCTGCAGACGCACACGTTTGCGTATCATATCAGAAAAAAGGGCCGga                                                   <  1:753095/149‑1 (MQ=255)                                                                                                   gTCTGGTGTGCCGGATGTTTTGTCGGATGCGGCGTGAACGCCTTATCCGAACTACGTCCGACAAACAAATTTCGTGCGAATTACCGCTAAAATCGCGTTTTCCTGCAGACGCACACGTTTGCGtatcatatca                                                                  >  1:748555/1‑133 (MQ=255)                                                                                                   gTCTGGTGTGCCGGATGTTTTGTCGGATGCGGCGTGAACGCCTTATCCGAACTACGTCCGACAAACAAATTTCGTGCGAATTACCGCTAAAATCGCGTTTTCCTGCAGACGCACACGTTTGCGtatcatatca                                                                  <  2:748555/133‑1 (MQ=255)                                                                                                   gTCTGGTGTGCCGGATGTTTTGTCGGATGCGGCGTGAACGCCTTATCCGAACTACGTCCGACAAACAAATTTCGTGCGAATTACCGCTAAAATCGCGTTTTCCTGCAGACGCACACGTTTGCGTATCATATCAGAAAAAAGGGCCGgat                                                  >  1:833034/1‑149 (MQ=255)                                                                                                      gggTGTGCCGGATGTTTTGTCGGATGCGGCGTGAACGCCTTATCCGAACTACGTCCGACAAACAAATTTCGTGCGAATTACCGCTAAAATCGCGTTTTCCTGCAGACGCACACGTTTGCGTATCCTATCAGAAAAAAGGGCCGgatgat                                               <  1:723338/148‑1 (MQ=255)                                                                                                        gtgtGCCGGATGTTTTGTCGGATGCGGCGTGAACGCCTTATCCGAACTACGTCCGACAAACAAATTTCGTGCGAATTACCGCTAAAATCGCGTTTTCCTGCAGACGCACACGTTTGCGTATCATATCAGAAAAAAGGGCCGGATGATTc                                             <  1:565056/149‑1 (MQ=255)                                                                                                        gggtgCCGGATGTTTGTTCGGATGCGGCGTCAACGCCTTACCCGAACTACGTCCGACAAACAAATTTCGTGCGAATTACCGCTAAAATCGCGTTTACCTGCAGACGCACACGTTTGCGTATCATATCAGAAAAAAGGGCCGGATGATTc                                             <  1:547814/147‑1 (MQ=255)                                                                                                             ccGTATGTTTTGTCGGATGCGGCGTGAACGCCTTATCCGAACTACGTCCGACAAACAAATTTCGTGCGAATTACCGCTAAAATCGCGTTTTCCTGCAGACGCACACGTTTGCGTATCATATCAGAAAAAAGGGCCGGATGATTCCAGcc                                        <  2:673501/149‑1 (MQ=255)                                                                                                             ccGGATGTTTTGTCGGATGCGGCGTGAACTCATTATCCGAACTACGTCCGACAAACAAATCTCGTGCGAATTACCGCTAAGATCGCGTTTTCCTGCAGACGCACACGTTTGCGTATCATATCTGAAAAAAGGGCCTGATGATTCCAGcc                                        <  1:687189/149‑1 (MQ=255)                                                                                                                    ttttGTCGGATGCGGCGTGAACGCCTTATCCGAACTACGTCCGACAAACAAATTTCGTGCGAATTACTGCTAAAATCGCGTTTTCCTGCAGACGCACACGTTTGCGTATCCTATCAAAAAAAAGGGCCGGATGATTCCAGCCCTGTAtt                                 >  2:135494/1‑149 (MQ=255)                                                                                                                     tttGTCGGATGCGGCGTGAACGCCTTATCCGAACTACGTCCGACAAACAAATTTCGTGCGAATTACCGCTAAAATCGCGTTTTCCTGCAGACGCACACGTTTGCGTATCATATCAGAAAAAAGGGCCGGATGATTCCAGCCCTGTAttt                                <  1:524334/149‑1 (MQ=255)                                                                                                                          cGGATGCGGCGTGAACGCCTTATCCGAACTACGTCCGACAAACAAATTTCGTGCGAATTACCGCTAAAATCGCGTTTTCCTGCAGACGCACACGTTTGCGTATCATATCAGAAAAAAGGGCCGGATGATTCCAGCCCTGTATTTTTACt                           <  1:280275/149‑1 (MQ=255)                                                                                                                            gATGCGGCGTGAACGCCTTATCCGAACTACGTCCGACAAACAAATTTCGAGCGAATTACCACTAAAATCGCGCTTTCCTCCAGACGCACACGTTTGCGAATCATATCACAAAAAAGGCCCGGATGATTCCCACCCTGTATTTTTACttc                         >  2:76994/1‑148 (MQ=255)                                                                                                                              tGCGGCGTGAACGCCTTATCCGAACTACGTCCGACAAACAAATTTCGTGCGAATTACCGCTAAAATCGCGTTTTCCTGCAGACGCACACGTTTGCGTATCATATCCGCCAAAAGGGCCGGATGATTCCAGCCCTGTATTTTTACTTGCt                       <  1:620131/149‑1 (MQ=255)                                                                                                                                      gAACGCCTTATCCGAACTACGTCCGACAAACAAATTTCGTGCGAATTACCGCTAAAATCGCGTTTTCCTGCAGACGCACACGTTTGCGTATCATATCAGAAAAAAGGGCCGGATGATTCCAGCCCTGTATTTTTACTTGCTAAACGCAg               <  2:42062/149‑1 (MQ=255)                                                                                                                                             ttaccggAACGACGTACGACAAGCAAATTTCGTGGGAAGTACTGCTAAAAGGGAGTTGTCCTGCAGACGCACACGTTTGCGTAAAATATCAGAAAAAAGGGCCGGATGATTCCAGCCCTGTATTTTTACTTGCTAAACGCAGCCTGGaa        <  2:641039/143‑1 (MQ=255)                                                                                                                                             ttATCCGAACTACGTCCGACAAACAAATTTCGTGCGAATTACCGCTAAAATCGCGTTTTCCTGCAGACGCACACGTTTGCGTATCATATCAGAAAAAAGGGCCGGATGATTCCAGCCCTGTATTTTTACTTGCTAAACGCAGCCTGGaa        <  1:637098/149‑1 (MQ=255)                                                                                                                                                tCCGAACTACGTCCGACAAACAAATTTCGTGCGAATTACCGCTAAATTCGCGTTTTCCTGCAGACGCACACGTTTGCGTATCATGTCAGAAAAAAGGGCCGGATGATTCCAGCCCTGTATTTTTACTTGCTAAACGCAGCCTGGAAGAc     >  1:755475/1‑149 (MQ=255)                                                                                                                                                tCCGAACTACGTCCGACAAACAAATTTCGTGCGAATTACCGCTAAAATCGCGTTTTCCTGCAGACGCACACGTTTGCGTATCATATCAGAAAAAAGGGCCGGATGATTCCAGCCCTGTATTTTTACTTGCTAAACGCAGCCTGGAAGAc     >  1:381888/1‑149 (MQ=255)                                                                                                                                                tCCGAACTACGTCCGACAAACAAATTTCGTGAGAATTACCGCTAAAATCGCGTTTTCCTGCAGACGCACACGTTTGCGTATCATATCAGAAAAAAGGGCCGGATGATTCCAGCCCTGTATTTTTACTTGCTAAACGCAGCCTGGAAGAc     <  1:300979/149‑1 (MQ=255)                                                                                                                                                  cGAACTACGTCCGACAAACAAATTTCGTGCGAATTACCGCTAAAATCGCGTTTTCCTGCAGACGCACACGTTTGCGTATCATATCAGAAAAAAGGGCCGGATGATTCCAGCCCTGTATTTTTACTTGCTAAACGCAGCCTGGAAGACAg   >  1:725150/1‑149 (MQ=255)                                                                                                                                                   gAACTACGTCCGACAAACAAATTTCGTGCGAATTACCGCTAAAATCGCGTTTTCCTGCAGACGCACACGTTTGCGTATCATATCAGAAAAAAGGGCCGGATGATTCCAGCCCTGTATTTTTACTTGCTAAACGCAGCCTGGAAGACAGc  <  1:765902/149‑1 (MQ=255)                                                                                                                                                   |                                                                                                                                                     GTGCTGTATACGGTTTTCGCTTTACCACGATACAACTCAGCTTGCTTTTGCATCTTTATCACTCCTGGGTGTGAATTAACGTTTTAAAATCTTTTGCTGTCTGGTGTGCCGGATGTTTTGTCGGATGCGGCGTGAACGCCTTATCCGAACTACGTCCGACAAACAAATTTCGTGCGAATTACCGCTAAAATCGCGTTTTCCTGCAGACGCACACGTTTGCGTATCATATCAGAAAAAAGGGCCGGATGATTCCAGCCCTGTATTTTTACTTGCTAAACGCAGCCTGGAAGACAGC  >  NC_000913_3_bme_pgi/2597566‑2597860

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.