New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913_3_bme_pgi = 1939098NA (NA)4 (0.100) 4/270 5.9 NA intergenic (+7/+124) pykA/lpxM pyruvate kinase II/myristoyl‑acyl carrier protein (ACP)‑dependent acyltransferase
?NC_000913_3_bme_pgi = 1939128 NA (NA)noncoding (30/30 nt) REP137 (repetitive extragenic palindromic) element; contains 1 REP sequences REP137 (repetitive extragenic palindromic) element; contains 1 REP sequences
Rejected: Coverage evenness skew score above cutoff.

GTAGCAGCTGCCAGCGAAGCGGTTAATCTGCTGCGCGATAAAGGTTACTTGATGTCTGGTGACCTGGTGATTGTCACCCAGGGCGACGTGATGAGTACCGTGGGTTCTACTAATACCACGCGTATTTTAACGGTAGAGTAAGTACGTTGCCGGATGCGGCGAAAACGCCACATCCGGCCTACAGTTCAATGATAGTTCAACAGATTTCGAATATTCTGAAGCAAACTTGAACTTATCATCAGGCGAAGGCCTCTCCTCGCGAGAGGCTTTTTTATTTGATGGGATAAAGATCTTTG  >  NC_000913_3_bme_pgi/1938951‑1939246
                                                                                                                                                   |                                                                                                                                                    
gTAGCAGCTGCCAGCGAAGCGGTTAATCTGCTGCGCGATAAAGGTTACTTGATGTCTGGTGACCTGGTGATTGTCACCCAGGGCGACGTGATGAGTACCGTGGGTTCTACTAATACCACGCGTATTTTAACGGTAGAGTAAGTACGTTg                                                                                                                                                     >  1:54979/1‑149 (MQ=255)
        tGCCAGCGAAGCGGTTAATCTGCTGCGCGATAAAGGTTACTTGATGTCTGGTGACCTGGTGATTGTCACCCAGGGCGACGTGATGAGTACCGTGGGTTCTACTAATACCACGCGTATTTTAACGGGAGAGTAAGTACGTTGCCGGATgc                                                                                                                                             >  2:150149/1‑149 (MQ=255)
                  gCGGTTAATCTGCTGCGCGATAAAGGTTACTTGATGTCTGGTGACCTGGTGATTGTCACCCAGGGCGACGTGATGAGTACCGTGGGTTCTACTAATACCACGCGTATTTTAACGGTAGAGTAAGTACGTTGCCGGATGCGGCGAAAACg                                                                                                                                   >  2:722348/1‑149 (MQ=255)
                   cGGTTAATCTGCTGCGCGATAAAGGTTACTTGATGTCTGGTGACCTGGTGATTGTCACCCAGGGCGACGTGATGAGTACCGTGGGTTCTACTAATACCACGCGTATTTTAACGGTAGAGTAAGTACGTTGCCGGATGCGGCGAAAACGc                                                                                                                                  <  2:486733/149‑1 (MQ=255)
                   cGGTTAATCTGCTGCGCGATAAAGGTTACTTGATGTCTGGTGACCTGGTGATTGTCACCCAGGGCGACGTGATGAGTACCGTGGGTTCTACTAATACCACGCGTATTTTAACGGTAGAGTAAGTACGTTGCCGGATGCGGCGAAAACGc                                                                                                                                  <  2:482493/149‑1 (MQ=255)
                            tgctgcGCGATAAAGGTTACTTGATGTCTGGTGACCTGGTGATTGTCACCCAGGGCGACGTGATGAGTACCGTGGGTTCTACTAATACCACGCGTATTTTAACGGTAGAGTAAGTACGTTGCCGGATGCGGCGAAACCGCCACATCCgg                                                                                                                         >  2:2706/1‑149 (MQ=255)
                                        aaGGGTACTTGATGTCTGGTGACCTGGTGACTGTCACCCAGGGCGACGTGATGAGTACCGTGGGTTCTACTAATACCACGCGTATTTTAACGGTAGAGTAAGTACGTTGCCGGATGCGGCGAAAACGCCACATCCGGCCTACAGTTCaa                                                                                                             <  1:409156/149‑1 (MQ=255)
                                           gTTACTTGATGTCTGGTGACCTGGTGATTGTCACCCAGGGCGACGTGATGAGTACCGTGGGTTCTACTAATACCACGCGTATTTTAACGGTAGAGTAAGTACGTTGCCGGATGCGGCGAAAACGCCACATCCGGCCTACAGTTCAATGa                                                                                                          <  1:276446/149‑1 (MQ=255)
                                            ttACTTGATGTCTGGTGACCTGGTGATTGTCACCCAGGGCGACGTGATGAGTACCGTGGGTTCTACTAATACCACGCGTATTTTAACGGTAGAGTAAGTACGTTGCCGGATGCGGCGAAAACGCCACATCCGGCCTACAGTTCAATGAt                                                                                                         <  1:602750/149‑1 (MQ=255)
                                                ttGATGTCTGGTGACCTGGTGATTGTCACCCAGGGCGACGTGATGAGTACCGTGGGTTCTACTAATACCACGCGTATTTTAACGGTCGAGTAAGTACGTTGCCGGATGCGGCGAAAACGCCACATCCGGCCTACAGTTCAATGATAGtt                                                                                                     >  1:28455/1‑149 (MQ=255)
                                                      tCTGGTGACCTGGTGATTGTCACCCAGGGCGACGTGATGAGTACCGTGGGTTCTACTAATACCACGCGTATTTTAACGGTAGAGTAAGTACGTTGCCGGATGCGGCGAAAACGCCACATCCGGCCTACCGTTCAATGATAGTTCAAccg                                                                                               >  1:130522/1‑147 (MQ=255)
                                                        tGGTTACCTGGTGATTCTCCCCCAGGGCGACGTGATGAGTACTGTGGGTTCTACTAATCCCACGCGTATTTTAACGGTAGCGTAAGTACGTTGCCGGATGCGGCGAAAACGCCACATCCGGCCTACAGTTCAATGATAGTTCAACAGAt                                                                                             <  2:268799/149‑1 (MQ=255)
                                                        tGGTGACCTGGTGATTGTCACCCAGGGCGACGTGATGAGTACCGTGGGTTCTACTAATACCACGCGTATTTTAACGGTAGAGTAAGTACGTTGCCGGATGCGGCGAAAACGCCACATCCGGCCTACAGTTCAATGATAGTTCAACAGAt                                                                                             >  2:42074/1‑149 (MQ=255)
                                                           tGACCTTGTTATTGTCACCCCGGGCTAAGTGATGAATTACTTTTGTGCTACTAATACCACGCGTATTTTAACGGTAGAGTAAGGACGTTGCCGGATGCGGCGAAAACGCCACATCCGGCCTACAGTTCAATGATAGTTCAACAGATTTc                                                                                          <  1:531137/149‑1 (MQ=255)
                                                              ccTGGTGATTGTCACCCAGGGCGACGTGATGAGTACCGTGGGTTCTACTAATACCACGCGTATTTTAACGGTAGAGTAAGTACGTTGcc                                                                                                                                                   >  2:515366/1‑89 (MQ=255)
                                                              ccTGGTGATTGTCACCCAGGGCGACGTGATGAGTACCGTGGGTTCTACTAATACCACGCGTATTTTAACGGTAGAGTAAGTACGTTGcc                                                                                                                                                   <  1:515366/89‑1 (MQ=255)
                                                               cTGGTGATTGTCACCCAGGGCGACGTGATGAGTACCGTGGGTTCTACTAATACCACGCGTATTTTAACGGTAGAGTAAGTACGTTGCCGGATGCGGCGAAAACGCCACATCCGGCCTACAGTTCAATGATAGTTCAACAGATTTCGAat                                                                                      >  1:362768/1‑149 (MQ=255)
                                                                tGGTGATTGTCACCCAGGGCGACGTGATGAGTACCGTGGGTTCTACTAATACCACGCGTATTTTAACGGTAGAGTAAGTACGTTGCCGGATGCGGCGAAAACGCCACATCCGGCCTACAGTTCAATGATAGTTCAACAGATTTCGAata                                                                                     >  1:447413/1‑149 (MQ=255)
                                                                 ggTGATTGTCACCCAGGGCGACGTGATGAGTACCGTAGGTTCTACTAATACCACGCGTATTTTAACGGTAGAGTAAGTACGTTGCCGGATGCGGCGAAAACGCCACATCCGGCCTACAGTTCAATGATAGTTCAACAGATTTCGAatat                                                                                    >  2:146157/1‑149 (MQ=255)
                                                                  gTGATTGTCACTCGAGGCGACGTGATGAGTACGGTGGGTTCTACGAATACCACGCTTATTTTAACGGTAGAGTAAGTACGTTGCCGGATGCGGCGAAAACGCCACATCCGGCCTACAGTTCAATGATAGTTCAACAGATTTCGAATAtt                                                                                   <  2:346762/149‑1 (MQ=255)
                                                                  gTGATTGTCACCCAGGGCGACGTGATGAGTACCGTGGGTTCTACTAATACCACGCGTATTTTAACGGTAGAGTAAGTACGTTGCCGGATGCGGCGAAAACGCCACATCCGGCCTACAGTTCAATGATAGTTCAACAGATTTCGAATAtt                                                                                   <  2:362768/149‑1 (MQ=255)
                                                                   tGATTGTCACCCAGGGCGACGTGATGAGTACCGTGGGTTCTACTAATACCACGCGTATTTTAACGGTAGAGTAAGTACGTTGCCGGATGCGGCGAAAACGCCACATCCGGCCTACAGTTCAATGATAGTTCAACAGATTTCGAATATTc                                                                                  >  2:413211/1‑149 (MQ=255)
                                                                    gATTGTCACCCAGGGCGACGTGATGAGTACCGTGGGTTCTACTAATACCACGCGTATTTTAACGGTAGAGTAAGTACGTTGCCGGATGCGGCGAAAACGCCACATCCGGCCTACAGTTCAATGATAGTTCAACAGATTTCGAATATTCt                                                                                 <  2:562390/149‑1 (MQ=255)
                                                                             ccAGGGCGACGTGATGAGTACCGTGGGTTCTACTAATACCACGCGTATTTTAACGGTAGAGTAAGTACGTTGCCGGATGCGGCGAAAACGCCACATCCGGCCTACAGTTAAATGATAGTTCAACAGATTTCGAATATTCTGAAGCAAAc                                                                        >  1:264179/1‑149 (MQ=255)
                                                                                  gCGACGTGATGAGCACCGTGGGTTCTACTAATACCACGCGTATTTTAACGGTAGAGTAAGTACGTTGCCGGATGCGGCGAAAACGCCACATCCGGCCTACAGTTCAATGATAGTTCAACAGATTTCGAATATTCTGAAGCAAACTTGaa                                                                   <  2:317116/149‑1 (MQ=255)
                                                                                    gACGTGATGAGTACCGTGGGTTCTACTAATACCACGCGTATTTTAACGGTAGAGTAAGTACGTTGCCGGATGCGGCGAAACCGCCACATCCGGCCTACAGTTCCATGATAGTTCAAAAGATTTCGAATATACTGAAGCAAACTTGaaat                                                                 >  1:244835/1‑147 (MQ=255)
                                                                                      cGTGATGACTTCCGTGGGTTCTACTAATCCCACGCGTATTTTAACGGTAGAGTAAGTACGTTGCCGGATGCGGCGAAAACGCCACATCCGGCCTACAGTTCAATGATAGTTCAACAGATTTCGAATATTCTGAAGCAAACTTGAACTTa                                                               <  1:329265/149‑1 (MQ=255)
                                                                                       gTGATGAGTACCGTGGGTTCTACTAATACCACGCGTATTTTAACGGTAGAGTAAGTACGTTGCCGGATGCGGCGAAAACGCCACATCCGGCCTACAGTTCAATGATAGTTCAACAGATTTCGAATATTCTGAAGCAAACTTGAACTTat                                                              >  2:352821/1‑149 (MQ=255)
                                                                                          atgaGTACCGTGGGTTCTACTAATACCACGCGTATTTTAACGGTAGAGTAAGTACGTTGCCGGATGCGGCGAAAACGCCACATCCGGCCTACAGTTCAATGATAGTTCAACAGATTTCGAATATTCTGAAGCAAACTTGAACTTatcat                                                           <  1:566251/149‑1 (MQ=255)
                                                                                          atgaGTACCGTGGGTTCTACTAATACCACGCGTATTTTAACGGTAGAGTAAGTACGTTGCCGGATGCGGCGAAAACGCCACATCCGGCCTACAGTTCAATGATAGTTCAACAGATTTCGAATATTCTGAAGCAAACTTGAACTTatcat                                                           <  2:447413/149‑1 (MQ=255)
                                                                                           tgaGTACCGTGGGTTCTACTAATACCACGCGTATTTTAACGGTAGAGTAAGTACGTTGCCGGATGCGGCGAAAAc                                                                                                                                    >  2:137959/1‑75 (MQ=255)
                                                                                           tgaGTACCGTGGGTTCTACTAATACCACGCGTATTTTAACGGTAGAGTAAGTACGTTGCCGGATGCGGCGAAAAc                                                                                                                                    <  1:137959/75‑1 (MQ=255)
                                                                                                      ggTTCTACTAATACCACGCGTATTTTAACGGTAGAGTAAGTACGTTGCCGGATGCGGCGAAAACGCCACATCCGGCCTACAGTTCAATGATAGTTTAACAGATTTCGAATATTCTGAAGCAAACTTGAACTTATCATCAGGCGAAGGcc                                               >  1:122611/1‑149 (MQ=255)
                                                                                                        ttCTACTAATACCACGCGTATTTTAACGGTAGAGTAAGTACGTTGCCGGATGCGGCGAAAACGCCACATCCGGCCTACAATTCAATGATAGTTCAACAGATTTCGAATATTCTGAAGCAAACTTGAACTTACCATCAAGCCAACGcccc                                             >  2:751752/1‑147 (MQ=255)
                                                                                                           tactaATACCACTCGTATTTTAACGGTAGAGTAAGTACGTTGCCGGATgcggc                                                                                                                                          <  2:164699/53‑1 (MQ=255)
                                                                                                           tactaATACCACGCGTATTTTAACGGTAGAGTAAGTACGTTGCCGGATgcggc                                                                                                                                          >  1:164699/1‑53 (MQ=255)
                                                                                                            actaATACCACGCGTATTTTAACGGTAGAGTAAGTACGTTGCCGGATGCGGCGAAAACGCCACATCCGGCCTACAGTTCAATGATAGTTCAACAGATTTCGAATATTCTGAAGCAAACTTGAACTTATCATCAGACGAAGGACcctcct                                         >  1:230941/1‑149 (MQ=255)
                                                                                                                    cccgcgTATTTTAACGGTAGAGTAAGTACGTTGCCGGATGCGGCGAAAACGCCACATCCGGCCTACAGTTCAATGATAGTTCAACAGATTTCGAATATTCTGAAGCAAACTTGAACTTATCATCAGGCGAAGGCCTCTCCTCGCGagag                                 <  2:468799/147‑1 (MQ=255)
                                                                                                                                   ggTAGAGTAAGTACGTTGCCGGATGCGGCGAAAACGCCACATCCGGCCTACAGTTCAATGATAGTTCAACAGATTTCGAATATTCTGAAGCAAACTTGAACTTATCATCAGGCGAAGGCCTCTCCTCGCGAGAGGCTTTTTTATTTGAt                  <  2:54979/149‑1 (MQ=255)
                                                                                                                                   ggTAGAGTAAGTACGTTGCCGGATGCGGCGAAAACGCCACATCCGGCCTACAGTTCAATGATAGTTCAACAGATTTCGAATATTCTCAAGCAAACTTGAACTTATCATCAGGCGAAGGCCTCTCCTCGCGAGAGGCTTTTTTATTTGAt                  >  2:684908/1‑149 (MQ=255)
                                                                                                                                     tAGAGTAAGTACGTTGCCGGATGCGGCGAAAACGCCACATCCGGCCTACAGTTCAATGATAGTTCAACAGATTTCGAATATTCTGAAGCAAACTTGAACTTATCATCAGGCGAAGGCCTCTCCTCGCGAGAGGCTTTTTTATTTGATgg                <  1:150149/149‑1 (MQ=255)
                                                                                                                                       gagTAAGTACGTTGCCGGATGCGGCGAAAACGCCACATCCGGCCTACAGTTCAATGATAGTTCAACAGATTTCGAATATTCTGAAGCAAACTTGAACTTATCATCAGGCGAAGGCCTCTCCTCGCGAGAGGCTTTTTTATTTGATGGGa              >  1:727725/1‑149 (MQ=255)
                                                                                                                                         gtaagtaCGTTGCCGGATGCGGCGAAAACGCCACATCCGGCCTACAGTTCAATGATAGTTCAACAGATTTCGAATATTCTGAAGCAAACTTGAACTTATCATCAGGCGAAGGCCTCTCCTCGCGAGAGGCTTTTTTATTTGATGGGATa            >  1:334620/1‑149 (MQ=255)
                                                                                                                                                   tGCCGGATGCGGCGAAAACGCCACATCCGGCCTACAGTTCAATGATAGTTCAACAGATTTCGAATATTCTGAAGCAAACTTGAACTTATCATCAGGCGAAGGCCTCTCCTCGCGAGAGGCTTTTTTATTTGATGGGATAAAGATCTTTg  <  1:413211/149‑1 (MQ=255)
                                                                                                                                                   |                                                                                                                                                    
GTAGCAGCTGCCAGCGAAGCGGTTAATCTGCTGCGCGATAAAGGTTACTTGATGTCTGGTGACCTGGTGATTGTCACCCAGGGCGACGTGATGAGTACCGTGGGTTCTACTAATACCACGCGTATTTTAACGGTAGAGTAAGTACGTTGCCGGATGCGGCGAAAACGCCACATCCGGCCTACAGTTCAATGATAGTTCAACAGATTTCGAATATTCTGAAGCAAACTTGAACTTATCATCAGGCGAAGGCCTCTCCTCGCGAGAGGCTTTTTTATTTGATGGGATAAAGATCTTTG  >  NC_000913_3_bme_pgi/1938951‑1939246

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.