New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913_3_bme_pgi	= 1939098	NA (NA)	4 (0.100)	4/270	5.9	NA	intergenic (+7/+124)	pykA/lpxM	pyruvate kinase II/myristoyl‑acyl carrier protein (ACP)‑dependent acyltransferase
	?	NC_000913_3_bme_pgi	= 1939128	NA (NA)					noncoding (30/30 nt)	REP137 (repetitive extragenic palindromic) element; contains 1 REP sequences	REP137 (repetitive extragenic palindromic) element; contains 1 REP sequences
Rejected: Coverage evenness skew score above cutoff.

AAGGTTACTTGATGTCTGGTGACCTGGTGATTGTCACCCAGGGCGACGTGATGAGTACCGTGGGTTCTACTAATACCACGCGTATTTTAACGGTAGAGTAAGTACGTTGCCGGATGCGGCGAAAACGCCACATCCGGCCTACAGTTCAATGATAGTTCAACAGATTTCGAATATTCTGAAGCAAACTTGAACTTATCATCAGGCGAAGGCCTCTCCTCGCGAGAGGCTTTTTTATTTGATGGGATAAAGATCTTTGCGCTTATACGGCTGGATTTCGCCC  >  NC_000913_3_bme_pgi/1938991‑1939270                                                                                                                                          |                                                                                                                                               aaGGGTACTTGATGTCTGGTGACCTGGTGACTGTCACCCAGGGCGACGTGATGAGTACCGTGGGTTCTACTAATACCACGCGTATTTTAACGGTAGAGTAAGTACGTTGCCGGATGCGGCGAAAACGCCACATCCGGCCTACAGTTCaa                                                                                                                                     <  1:409156/149‑1 (MQ=255)    gTTACTTGATGTCTGGTGACCTGGTGATTGTCACCCAGGGCGACGTGATGAGTACCGTGGGTTCTACTAATACCACGCGTATTTTAACGGTAGAGTAAGTACGTTGCCGGATGCGGCGAAAACGCCACATCCGGCCTACAGTTCAATGa                                                                                                                                  <  1:276446/149‑1 (MQ=255)     ttACTTGATGTCTGGTGACCTGGTGATTGTCACCCAGGGCGACGTGATGAGTACCGTGGGTTCTACTAATACCACGCGTATTTTAACGGTAGAGTAAGTACGTTGCCGGATGCGGCGAAAACGCCACATCCGGCCTACAGTTCAATGAt                                                                                                                                 <  1:602750/149‑1 (MQ=255)         ttGATGTCTGGTGACCTGGTGATTGTCACCCAGGGCGACGTGATGAGTACCGTGGGTTCTACTAATACCACGCGTATTTTAACGGTCGAGTAAGTACGTTGCCGGATGCGGCGAAAACGCCACATCCGGCCTACAGTTCAATGATAGtt                                                                                                                             >  1:28455/1‑149 (MQ=255)               tCTGGTGACCTGGTGATTGTCACCCAGGGCGACGTGATGAGTACCGTGGGTTCTACTAATACCACGCGTATTTTAACGGTAGAGTAAGTACGTTGCCGGATGCGGCGAAAACGCCACATCCGGCCTACCGTTCAATGATAGTTCAAccg                                                                                                                       >  1:130522/1‑147 (MQ=255)                 tGGTTACCTGGTGATTCTCCCCCAGGGCGACGTGATGAGTACTGTGGGTTCTACTAATCCCACGCGTATTTTAACGGTAGCGTAAGTACGTTGCCGGATGCGGCGAAAACGCCACATCCGGCCTACAGTTCAATGATAGTTCAACAGAt                                                                                                                     <  2:268799/149‑1 (MQ=255)                 tGGTGACCTGGTGATTGTCACCCAGGGCGACGTGATGAGTACCGTGGGTTCTACTAATACCACGCGTATTTTAACGGTAGAGTAAGTACGTTGCCGGATGCGGCGAAAACGCCACATCCGGCCTACAGTTCAATGATAGTTCAACAGAt                                                                                                                     >  2:42074/1‑149 (MQ=255)                    tGACCTTGTTATTGTCACCCCGGGCTAAGTGATGAATTACTTTTGTGCTACTAATACCACGCGTATTTTAACGGTAGAGTAAGGACGTTGCCGGATGCGGCGAAAACGCCACATCCGGCCTACAGTTCAATGATAGTTCAACAGATTTc                                                                                                                  <  1:531137/149‑1 (MQ=255)                        cTGGTGATTGTCACCCAGGGCGACGTGATGAGTACCGTGGGTTCTACTAATACCACGCGTATTTTAACGGTAGAGTAAGTACGTTGCCGGATGCGGCGAAAACGCCACATCCGGCCTACAGTTCAATGATAGTTCAACAGATTTCGAat                                                                                                              >  1:362768/1‑149 (MQ=255)                         tGGTGATTGTCACCCAGGGCGACGTGATGAGTACCGTGGGTTCTACTAATACCACGCGTATTTTAACGGTAGAGTAAGTACGTTGCCGGATGCGGCGAAAACGCCACATCCGGCCTACAGTTCAATGATAGTTCAACAGATTTCGAata                                                                                                             >  1:447413/1‑149 (MQ=255)                          ggTGATTGTCACCCAGGGCGACGTGATGAGTACCGTAGGTTCTACTAATACCACGCGTATTTTAACGGTAGAGTAAGTACGTTGCCGGATGCGGCGAAAACGCCACATCCGGCCTACAGTTCAATGATAGTTCAACAGATTTCGAatat                                                                                                            >  2:146157/1‑149 (MQ=255)                           gTGATTGTCACTCGAGGCGACGTGATGAGTACGGTGGGTTCTACGAATACCACGCTTATTTTAACGGTAGAGTAAGTACGTTGCCGGATGCGGCGAAAACGCCACATCCGGCCTACAGTTCAATGATAGTTCAACAGATTTCGAATAtt                                                                                                           <  2:346762/149‑1 (MQ=255)                           gTGATTGTCACCCAGGGCGACGTGATGAGTACCGTGGGTTCTACTAATACCACGCGTATTTTAACGGTAGAGTAAGTACGTTGCCGGATGCGGCGAAAACGCCACATCCGGCCTACAGTTCAATGATAGTTCAACAGATTTCGAATAtt                                                                                                           <  2:362768/149‑1 (MQ=255)                            tGATTGTCACCCAGGGCGACGTGATGAGTACCGTGGGTTCTACTAATACCACGCGTATTTTAACGGTAGAGTAAGTACGTTGCCGGATGCGGCGAAAACGCCACATCCGGCCTACAGTTCAATGATAGTTCAACAGATTTCGAATATTc                                                                                                          >  2:413211/1‑149 (MQ=255)                             gATTGTCACCCAGGGCGACGTGATGAGTACCGTGGGTTCTACTAATACCACGCGTATTTTAACGGTAGAGTAAGTACGTTGCCGGATGCGGCGAAAACGCCACATCCGGCCTACAGTTCAATGATAGTTCAACAGATTTCGAATATTCt                                                                                                         <  2:562390/149‑1 (MQ=255)                                      ccAGGGCGACGTGATGAGTACCGTGGGTTCTACTAATACCACGCGTATTTTAACGGTAGAGTAAGTACGTTGCCGGATGCGGCGAAAACGCCACATCCGGCCTACAGTTAAATGATAGTTCAACAGATTTCGAATATTCTGAAGCAAAc                                                                                                >  1:264179/1‑149 (MQ=255)                                           gCGACGTGATGAGCACCGTGGGTTCTACTAATACCACGCGTATTTTAACGGTAGAGTAAGTACGTTGCCGGATGCGGCGAAAACGCCACATCCGGCCTACAGTTCAATGATAGTTCAACAGATTTCGAATATTCTGAAGCAAACTTGaa                                                                                           <  2:317116/149‑1 (MQ=255)                                             gACGTGATGAGTACCGTGGGTTCTACTAATACCACGCGTATTTTAACGGTAGAGTAAGTACGTTGCCGGATGCGGCGAAACCGCCACATCCGGCCTACAGTTCCATGATAGTTCAAAAGATTTCGAATATACTGAAGCAAACTTGaaat                                                                                         >  1:244835/1‑147 (MQ=255)                                               cGTGATGACTTCCGTGGGTTCTACTAATCCCACGCGTATTTTAACGGTAGAGTAAGTACGTTGCCGGATGCGGCGAAAACGCCACATCCGGCCTACAGTTCAATGATAGTTCAACAGATTTCGAATATTCTGAAGCAAACTTGAACTTa                                                                                       <  1:329265/149‑1 (MQ=255)                                                gTGATGAGTACCGTGGGTTCTACTAATACCACGCGTATTTTAACGGTAGAGTAAGTACGTTGCCGGATGCGGCGAAAACGCCACATCCGGCCTACAGTTCAATGATAGTTCAACAGATTTCGAATATTCTGAAGCAAACTTGAACTTat                                                                                      >  2:352821/1‑149 (MQ=255)                                                   atgaGTACCGTGGGTTCTACTAATACCACGCGTATTTTAACGGTAGAGTAAGTACGTTGCCGGATGCGGCGAAAACGCCACATCCGGCCTACAGTTCAATGATAGTTCAACAGATTTCGAATATTCTGAAGCAAACTTGAACTTatcat                                                                                   <  2:447413/149‑1 (MQ=255)                                                   atgaGTACCGTGGGTTCTACTAATACCACGCGTATTTTAACGGTAGAGTAAGTACGTTGCCGGATGCGGCGAAAACGCCACATCCGGCCTACAGTTCAATGATAGTTCAACAGATTTCGAATATTCTGAAGCAAACTTGAACTTatcat                                                                                   <  1:566251/149‑1 (MQ=255)                                                               ggTTCTACTAATACCACGCGTATTTTAACGGTAGAGTAAGTACGTTGCCGGATGCGGCGAAAACGCCACATCCGGCCTACAGTTCAATGATAGTTTAACAGATTTCGAATATTCTGAAGCAAACTTGAACTTATCATCAGGCGAAGGcc                                                                       >  1:122611/1‑149 (MQ=255)                                                                 ttCTACTAATACCACGCGTATTTTAACGGTAGAGTAAGTACGTTGCCGGATGCGGCGAAAACGCCACATCCGGCCTACAATTCAATGATAGTTCAACAGATTTCGAATATTCTGAAGCAAACTTGAACTTACCATCAAGCCAACGcccc                                                                     >  2:751752/1‑147 (MQ=255)                                                                     actaATACCACGCGTATTTTAACGGTAGAGTAAGTACGTTGCCGGATGCGGCGAAAACGCCACATCCGGCCTACAGTTCAATGATAGTTCAACAGATTTCGAATATTCTGAAGCAAACTTGAACTTATCATCAGACGAAGGACcctcct                                                                 >  1:230941/1‑149 (MQ=255)                                                                             cccgcgTATTTTAACGGTAGAGTAAGTACGTTGCCGGATGCGGCGAAAACGCCACATCCGGCCTACAGTTCAATGATAGTTCAACAGATTTCGAATATTCTGAAGCAAACTTGAACTTATCATCAGGCGAAGGCCTCTCCTCGCGagag                                                         <  2:468799/147‑1 (MQ=255)                                                                                            ggTAGAGTAAGTACGTTGCCGGATGCGGCGAAAACGCCACATCCGGCCTACAGTTCAATGATAGTTCAACAGATTTCGAATATTCTGAAGCAAACTTGAACTTATCATCAGGCGAAGGCCTCTCCTCGCGAGAGGCTTTTTTATTTGAt                                          <  2:54979/149‑1 (MQ=255)                                                                                            ggTAGAGTAAGTACGTTGCCGGATGCGGCGAAAACGCCACATCCGGCCTACAGTTCAATGATAGTTCAACAGATTTCGAATATTCTCAAGCAAACTTGAACTTATCATCAGGCGAAGGCCTCTCCTCGCGAGAGGCTTTTTTATTTGAt                                          >  2:684908/1‑149 (MQ=255)                                                                                              tAGAGTAAGTACGTTGCCGGATGCGGCGAAAACGCCACATCCGGCCTACAGTTCAATGATAGTTCAACAGATTTCGAATATTCTGAAGCAAACTTGAACTTATCATCAGGCGAAGGCCTCTCCTCGCGAGAGGCTTTTTTATTTGATgg                                        <  1:150149/149‑1 (MQ=255)                                                                                                gagTAAGTACGTTGCCGGATGCGGCGAAAACGCCACATCCGGCCTACAGTTCAATGATAGTTCAACAGATTTCGAATATTCTGAAGCAAACTTGAACTTATCATCAGGCGAAGGCCTCTCCTCGCGAGAGGCTTTTTTATTTGATGGGa                                      >  1:727725/1‑149 (MQ=255)                                                                                                  gtaagtaCGTTGCCGGATGCGGCGAAAACGCCACATCCGGCCTACAGTTCAATGATAGTTCAACAGATTTCGAATATTCTGAAGCAAACTTGAACTTATCATCAGGCGAAGGCCTCTCCTCGCGAGAGGCTTTTTTATTTGATGGGATa                                    >  1:334620/1‑149 (MQ=255)                                                                                                            tGCCGGATGCGGCGAAAACGCCACATCCGGCCTACAGTTCAATGATAGTTCAACAGATTTCGAATATTCTGAAGCAAACTTGAACTTATCATCAGGCGAAGGCCTCTCCTCGCGAGAGGCTTTTTTATTTGATGGGATAAAGATCTTTg                          <  1:413211/149‑1 (MQ=255)                                                                                                               cGGATGCGGCGAAAACGCCACATCCGGCCTACAGTTCAATGATAGTTCAACAGATTTCGAATATTCTGAAGCAAACTTGAACTTATCATCAGGCGAAGGCCTCTCCTCGCGAGAGGCTTTTTTATTTGATGGGATAAAGATCTTTgcgc                       <  2:334620/149‑1 (MQ=255)                                                                                                                               gCCACATCCGGCCTACAGTTCAATGATAGTTCAACAGATTTCGAATATTCTGAAGCAAACTTGAACTTATCATCAGGCGAAGGCCTCTCCTCGCGAGAGGCTTTTTTATTTGATGGGATAAAGATCTTTGCGCTTATACGGCTGGAttt       >  1:715914/1‑149 (MQ=255)                                                                                                                                   caTCCGGCCTACAGTTCAATGATAGTTCAACAGATTTCGAATATTCTGAAGCAAACTTGAACTTATCATCAGGCGAAGGCCTCTCCTCGCGAGAGGCTTTTTTATTTGATGGGATAAAGATCTTTGCGCTTATACGGCTGGATTTCGcc   >  1:742571/1‑149 (MQ=255)                                                                                                                                    aTCCGGCCTACAGTTCAATGATAGTTCAACAGATTTCGAATATTCTGAAGCAAACTTGAACTTATCATCAGGCGAAGGCCTCTCCTCGCGAGAGGCTTTTTTATTTGATGGGATAAAGATCTTTGCGCTTATACGGCTGGATTTCGccc  >  1:145471/1‑149 (MQ=255)                                                                                                                                    aTCCGGCCTACAGTTCAATGATAGTTCAACAGATTTCGAATATTCTGAAGCAAACTTGAACTTATCATCAGGCGAAGGCCTCTCCTCGCGAGAGGCTTTTTTATTTGATGGGATAAAGATCTTTACGCTTATACGGCTGGATTTCGccc  >  1:12466/1‑149 (MQ=255)                                                                                                                                          |                                                                                                                                               AAGGTTACTTGATGTCTGGTGACCTGGTGATTGTCACCCAGGGCGACGTGATGAGTACCGTGGGTTCTACTAATACCACGCGTATTTTAACGGTAGAGTAAGTACGTTGCCGGATGCGGCGAAAACGCCACATCCGGCCTACAGTTCAATGATAGTTCAACAGATTTCGAATATTCTGAAGCAAACTTGAACTTATCATCAGGCGAAGGCCTCTCCTCGCGAGAGGCTTTTTTATTTGATGGGATAAAGATCTTTGCGCTTATACGGCTGGATTTCGCCC  >  NC_000913_3_bme_pgi/1938991‑1939270

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.