New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913_3_bme_pgi	3950444 =	35 (0.790)	3 (0.070)	3/272	6.5	8.1%	intergenic (+24/‑63)	ilvL/ilvX	ilvG operon leader peptide/uncharacterized protein
	?	NC_000913_3_bme_pgi	3950470 =	35 (0.830)					intergenic (+50/‑37)	ilvL/ilvX	ilvG operon leader peptide/uncharacterized protein
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

CAAGATGCAAGAAAAGACAAAATGACAGCCCTTCTACGAGTGATTAGCCTGGTCGTGATTAGCGTGGTGGTGATTATTATCCCACCGTGCGGGGCTGCACTTGGACGAGGAAAGGCTTAGAGATCAAGCCTTAACGAACTAAGACCCCCGCACCGAAAGGTCCGGGGGTTTTTTTTGACCTTAAAAACATAACCGAGGAGCAGACAATGAATAACAGCACAAAATTCTGTTTCTCAAGATTCAGGACGGGGAACTAACTATGAATGGCGCACAGTGGGTGGTACATGCGTT  >  NC_000913_3_bme_pgi/3950301‑3950591                                                                                                                                                |                                                                                                                                                    cAAGATGCAAGAAAAGACAAAATGACAGCCCTTCTACGAGTGATTAGCCTGGTCGTGATTAGCGTGGTGGTGATTATTATCCCACCGTGCGGGGCTGCACTTGGACGAGGAAAGGCTTAGAGATCAAGCCTTAACGAACTAAGAccccc                                                                                                                                                >  2:246515/1‑149 (MQ=255)       gCAAGAAAAGACAAAATGACAGCCCTTCTACGAGTGATTAGGATGGCCGTTATTAGCGTAGAGGGGATTATTATCCCACCGTGCGGGGCTGCACTTGGACGAGGAAAGGCTTAGAGATCAAGCCTTAACGAACTAAGACCCCCGCACCg                                                                                                                                          >  1:571036/1‑149 (MQ=255)                 aCAAAATGACAGCCCTTCTACGAGTGATTAGCCTGGTCGTGATTAGCGTGGTGGTGATTATTATCCCACCGTGCGGGGCTGCACTTGGACGAGGAAAGGCTTAGAGATCAAGCCTTAACGAACTAAGACCCCCGCCCCGAAAGGTCCgg                                                                                                                                >  2:302095/1‑149 (MQ=255)                    aaaGGACAGACCTTTTACGAGTGATTAGCGTTGTCGGGATTAGCGTGGTGGTGATTATTATCCCACCGTGCGGGGCTGCACTTGGACGAGGAAAGGCTTAGAGATCAAGCGTTAACGAACTAAGACCCCCGCACCTAAAGGTCCggggg                                                                                                                             <  2:678261/149‑1 (MQ=255)                       tGACAGCCCTTCTACGAGTGATTAGCCTGGTCGTGATTAGCGTGGTGGTGATTATTATCCCACCGTGCGGGGCTGCACTTGGACGAGGAAAGGCTTAGAGATCAAGCCTTAACGAACTAAGACCCCCGCACCGAAAGGTCCGGGGGttt                                                                                                                          <  1:704433/149‑1 (MQ=255)                               cTTCTACGAGTGATTAGCCTGGTCGTGATTAGCGTGGTGGTGATTATTATCCCACCGTGCGGGGCTGCACTTGGACGAGGAAAGGCTTAGAGATCAAGCCTTAACGAACTAAGACCCCCGCACCGAAAGGTCCGGGGGTTTTTTTTGAc                                                                                                                  <  1:524040/149‑1 (MQ=255)                               cTTCTACGAGTGATTAGCCTGGTCGTGATTAGCGTGGGGGTGATTATTATCCCACCGTGCGGGGCTGCACTTGGACGAGGAAAGGCTTAGAGATCAAGCCTTAACGAACTAAGACCCCCGCACCGAAAGGTCCGGGGGATTTTTTTGAc                                                                                                                  >  1:596920/1‑149 (MQ=255)                                      gAGTGATTAGCCTGGTCGTGATTAGCGTGGTGGTGATTATTATCCCACCGTGCGGGGCTGCACTTGGACGAGGAAAGGCTTAGAGATCAAGCCTTAACGAACTAGGGTTCCCGCACCGTAAGGTGCGGGGGTTTTTTTTTTGCTTaaaa                                                                                                           >  1:34930/1‑149 (MQ=255)                                      gAGTGATTAGCCTGGTCGTGATTAGCGTGGTGGTGATTATTATCCCACCGTGCGGGGCTGCACTTGGACGAGGAAAGGCTTAGAGATCAAGCCTTAACGAACTAAGACCCCCGCACCGAACGGTCCGGGGGATTTTTTTGGCCTTaaaa                                                                                                           >  2:689594/1‑149 (MQ=255)                                      gAGTGATTAGCCTGGTCGTGATTAGCGTGGTGGTGATTATTATCCCACCGTGCGGGGCTGCACTTGGACGAGGAAAGGCTTAGAGATCAAGCCTTAACGAACTAAGACCCCCGAACCGAAAGGTCCGGGGGTTTTTTTTGACCTTaaaa                                                                                                           >  2:608582/1‑149 (MQ=255)                                         tGATTAGCCTGGTCGTGATTAGCGTGGTGGTGATTATTATCCCACCGTGCGGGGCTGCACTTGGACGAGGAAAGGCTTAGAGATCAAGCCTTAACGAACTAAGACCCCCGCACCGAAAGGTCCGGGGGTTTTTTTTGACCTTAAAAACa                                                                                                        >  2:613277/1‑149 (MQ=255)                                            ttAGCCTGGTCGTGATTAGCGTGGTGGTGATTATTATCCCACCGTGCGGGGCTGCACTTGGACGAGGAAAGGCTTAGAGATCAAGCCTTAACGAACTAAGACCCCCGCACCGAAAGGTCCGGGGGTTTTTTTTGACCTTAAAAACATaa                                                                                                     <  1:361576/149‑1 (MQ=255)                                               gCCTGGTCGTGATTAGCGTGGTGGTGATTATTATCCCACCGTGCGGGGCTGCACTTGGACGAGGAAAGGCTTAGAGATCAAGCCTTAACGAACTAAGACCCCCGCACCGAAAGGTCCGGGGGTTTTTTTTGACCTTAAAAACATAACCg                                                                                                  <  1:246515/149‑1 (MQ=255)                                                  tGGTCGTGATTAGCGTGGTGGTGATTATTATCCCACCGTGCGGGGCTGCACTTGGACGAGGAAAGGCTTAGAGATCAAGCCTTAACGAACTAAGACCCCCGCACCGAAAGGTCCGGGGGTTTTTTTTGACCTTAAAAACATACCGgagg                                                                                               >  2:150637/1‑149 (MQ=255)                                                  tGGTCGTGATTAGCGTGGTGGTGATTATTATCCCACCGTGCGGGGCTGCACTTGGACGAGGAAAGGCTTAGAGATCAAGCCTTAACGAACTAAGACCCCCGCACCGAAAGGTCCGGGGGTTTTTTTTGACCTTAAAAACATAACCgagg                                                                                               >  1:400484/1‑149 (MQ=255)                                                     tCGTGATTAGCGTGGTGGTGATTATTATCCCACCGTGCGGGGCTGCACTTGGACGAGGAAAGGCTTAGAGATCAAGCCTTAACGAACTAAGACCCCCGCACCGAAAGGTCCGGGGGTTTTTTTTGACCTTAAAAACATAACCGAGGAGc                                                                                            >  2:604560/1‑149 (MQ=255)                                                        tGATTAGCGTGGTGGTGATTATTATCCCACCGTGCGGGGCTGCACTTGGACGAGGAAAGGCTTAGAGATCAAGCCTTAACGAACTAAGACCCCCGCACCGAAAGGTCCGGGGGTTTTTTTTGACCTTAAAAACATAACCGAGGAGCAGa                                                                                         <  1:604560/149‑1 (MQ=255)                                                                                           ggggCTGCACTTGGACGAGGAAAGGCTTAGAGATCAAGCCTTAACGAACTAAGAc                                                                                                                                                    <  1:370736/55‑1 (MQ=255)                                                                                           ggggCTGCACTTGGACGAGGAAAGGCTTAGAGATCAAGCCTTAACGAACTAAGAc                                                                                                                                                    >  2:370736/1‑55 (MQ=255)                                                                                                    cTTGGACGAGGAAAGGCTTAGAGATCAAGCCTTAACGAACTAAGACCCCCGCACCGAAAGGTCCGGGGGTTTTTTTTGACCTTAAAAACATAACCGAGGAGCAGACAATGAATAACAGCACAAAATTc                                                                  >  1:350904/1‑128 (MQ=255)                                                                                                    cTTGGACGAGGAAAGGCTTAGAGATCAAGCCTTAACGAACTAAGACCCCCGCACCGAAAGGTCCGGGGGTTTTTTTTGACCTTAAAAACATAACCGAGGAGCAGACAATGAATAACAGCACAAAATTc                                                                  <  2:350904/128‑1 (MQ=255)                                                                                                         aCGAGGAAAGGCTTAGAGATCAAGCCTTAACGAACTAAGACCCCCGCACCGAAAGGTCCGGGGGTTTTTTTTGACCTTAAAAACATAACCGAGGAGCAGACAATGAATAACAGCACAAAATTCTGTTTCTCAAGATTCAGGACGGGGaa                                        <  1:644921/149‑1 (MQ=255)                                                                                                         aCGAGGAAAGGCTTAGAGATCAAGCCTTAACGAACTAAGACCCCCGCACCGAAAGGTCCGGGGGTTTTTTTTGACCTTAAAAACATAACCGAGCAGCAAACAATGAATAACAGCAGAAAATTCTGTTTCCCAAGATTCCGGAAgggcac                                        >  2:695472/1‑146 (MQ=255)                                                                                                             ggAAAGGCTTAAAGATCAAGCCTTAACGAACTAAGACCCCCGCACCGAAAGGGTCGGAGGTAATTTTAGACCTTCAAAACATAACCGAGGAGCAGAAGATGAATAAAAGCCCAAAATTCTTTTTCTCAAGATTCAGCACGGGAaactaa                                    >  2:560321/1‑149 (MQ=255)                                                                                                              gAAAGGCTTAGAGATCAAGCCTTAACGAACTAAGACCCCCGCACCGAAAGGTCCGGGGGTTTTTTTTGACCTTAAAAACATAACCGAGGAGCAGACAATGAATAACa                                                                             <  2:95112/107‑1 (MQ=255)                                                                                                              gAAAGGCTTAGAGATCAAGCCTTAACGAACTAAGACCCCCGCACCGAAAGGTCCGGGGGTTTTTTTTGACCTTAAAAACATAACCGAGGAGCAGACAATGAATAACa                                                                             >  1:95112/1‑107 (MQ=255)                                                                                                                     ttAGAGATCAAGCCTTAACGAACTAAGACCCCCGCACCGAAAGGTCCGGGGGTTTTTTTTGACCTTAAAAACATAACCGAGGAGCAGACAATGAATAACAGCACAAAATTCTGTTTCTCAAGATTCAGGACGGGGAACTAACTATGAAt                            >  1:423778/1‑149 (MQ=255)                                                                                                                      tAGAGATCAAGCCTTAACGAACTAAGACCCCCGCACCGAAAGGTCCGGGGTTTTTTTTTGACCTTAAAAACATAACCGAGGAGCAGACAATGAATAACAGCACAAAATTCTGTTTCTCAAGATTGAGGACGGGGAACTAACTATGCATg                           >  1:742269/1‑149 (MQ=255)                                                                                                                      tAGAGATCAAGCCTTAACGAACTAAGACCCCCGCACCGAAAGGTCCGGGGG‑TTTTTTTGACCTTAAAAACATAACCGAGGAGCAGACAATGAATAACAGCACAAAATTCTGTTTCTCAAGATTCAGGACGGGGAACTAACTATGAATgg                          <  1:385790/149‑1 (MQ=255)                                                                                                                       agagATCAAGCCTTAACGAACTAAGACCCCCGCACCGAAAGGTCCGGGGGTTTTTTTTGACCTTAAAAACATAACCGAGGAGCAGACAATGAATAACAGCACAAAATTCTGTTTCTCAAGATTCCGGACGGGGAACTAACTATGAATgg                          >  2:15407/1‑149 (MQ=255)                                                                                                                           aTCAAGCCTTAACGAACTAAGACCCCCGCACCGAAAGGTGCGGGGGTTTTTTTTGACCGTAAAAACATAACCGCGGAGCAGACAATGAATAACGGCACAAAATGCTGTTTCTCAGGATTCAGGAGGGGGAACTGACTATGAAGGgcgcg                      >  1:50806/1‑148 (MQ=255)                                                                                                                             cAAGCCTTAACGAACTAAGACCCCCGCACCGAAAGGTCCGGGGGTTTTTTTTGACCTTAAAAACATAACCGAGGAGCAGACAATGAATAACAGCACAAAATTCTGTTTCTCAAGATTCAGGACGGGGAACTAACTATGAATGGCGcaca                    <  1:110453/149‑1 (MQ=255)                                                                                                                                 ccTTAACGAACTAAGACCCCCGCACCGAAAGGTCCGGGGGTTTTTTTTGACCTTAAAAACATTACCGAGGGGCAGACAATGAATAACAGCACAAAGTTCTGTTTCTCAAGATTGTGGGCGGGGTACTAACTATGCGTGgcgcggggtgg                >  2:415400/1‑142 (MQ=255)                                                                                                                                             aaGACCCCCGCACCGAAAGGTCCGGGGGTTTTTTTTGACCTTAAAAACATAACCGAGGAGCAGACAATGAATAACAGCACAAAATTCTGTTTCTCAAGATTCAGGACGGGGAACTAACTATGAATGGCGCACAGTGGGTGGTACATGCg    >  1:81119/1‑149 (MQ=255)                                                                                                                                               gACCCCCGCACCGAAAGGTACGGGGGTTTTTTTTGACATTAAAAACCTAACCGGGGAGCAGACAATGAATAATGGCACGAAATTCTGTGTCTCAAGTTTCAGGGCGGGGATCTAACTATGAATGGCGCACAGTGGGTGGTACATGCGtt  <  2:571036/149‑1 (MQ=255)                                                                                                                                                |                                                                                                                                                    CAAGATGCAAGAAAAGACAAAATGACAGCCCTTCTACGAGTGATTAGCCTGGTCGTGATTAGCGTGGTGGTGATTATTATCCCACCGTGCGGGGCTGCACTTGGACGAGGAAAGGCTTAGAGATCAAGCCTTAACGAACTAAGACCCCCGCACCGAAAGGTCCGGGGGTTTTTTTTGACCTTAAAAACATAACCGAGGAGCAGACAATGAATAACAGCACAAAATTCTGTTTCTCAAGATTCAGGACGGGGAACTAACTATGAATGGCGCACAGTGGGTGGTACATGCGTT  >  NC_000913_3_bme_pgi/3950301‑3950591

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.