New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913_3_bme_pgi 3950444 =35 (0.790)3 (0.070) 3/272 6.5 8.1% intergenic (+24/‑63) ilvL/ilvX ilvG operon leader peptide/uncharacterized protein
?NC_000913_3_bme_pgi 3950470 = 35 (0.830)intergenic (+50/‑37) ilvL/ilvX ilvG operon leader peptide/uncharacterized protein
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

TGACAGCCCTTCTACGAGTGATTAGCCTGGTCGTGATTAGCGTGGTGGTGATTATTATCCCACCGTGCGGGGCTGCACTTGGACGAGGAAAGGCTTAGAGATCAAGCCTTAACGAACTAAGACCCCCGCACCGAAAGGTCCGGGGGTTTTTTTTGACCTTAAAAACATAACCGAGGAGCAGACAATGAATAACAGCACAAAATTCTGTTTCTCAAGATTCAGGACGGGGAACTAACTATGAATGGCGCACAGTGGGTGGTACATGCGTTGCGGGCACAGGGTGTGAA  >  NC_000913_3_bme_pgi/3950323‑3950609
                                                                                                                                                   |                                                                                                                                           
tGACAGCCCTTCTACGAGTGATTAGCCTGGTCGTGATTAGCGTGGTGGTGATTATTATCCCACCGTGCGGGGCTGCACTTGGACGAGGAAAGGCTTAGAGATCAAGCCTTAACGAACTAAGACCCCCGCACCGAAAGGTCCGGGGGttt                                                                                                                                            <  1:704433/149‑1 (MQ=255)
        cTTCTACGAGTGATTAGCCTGGTCGTGATTAGCGTGGTGGTGATTATTATCCCACCGTGCGGGGCTGCACTTGGACGAGGAAAGGCTTAGAGATCAAGCCTTAACGAACTAAGACCCCCGCACCGAAAGGTCCGGGGGTTTTTTTTGAc                                                                                                                                    <  1:524040/149‑1 (MQ=255)
        cTTCTACGAGTGATTAGCCTGGTCGTGATTAGCGTGGGGGTGATTATTATCCCACCGTGCGGGGCTGCACTTGGACGAGGAAAGGCTTAGAGATCAAGCCTTAACGAACTAAGACCCCCGCACCGAAAGGTCCGGGGGATTTTTTTGAc                                                                                                                                    >  1:596920/1‑149 (MQ=255)
               gAGTGATTAGCCTGGTCGTGATTAGCGTGGTGGTGATTATTATCCCACCGTGCGGGGCTGCACTTGGACGAGGAAAGGCTTAGAGATCAAGCCTTAACGAACTAGGGTTCCCGCACCGTAAGGTGCGGGGGTTTTTTTTTTGCTTaaaa                                                                                                                             >  1:34930/1‑149 (MQ=255)
               gAGTGATTAGCCTGGTCGTGATTAGCGTGGTGGTGATTATTATCCCACCGTGCGGGGCTGCACTTGGACGAGGAAAGGCTTAGAGATCAAGCCTTAACGAACTAAGACCCCCGCACCGAACGGTCCGGGGGATTTTTTTGGCCTTaaaa                                                                                                                             >  2:689594/1‑149 (MQ=255)
               gAGTGATTAGCCTGGTCGTGATTAGCGTGGTGGTGATTATTATCCCACCGTGCGGGGCTGCACTTGGACGAGGAAAGGCTTAGAGATCAAGCCTTAACGAACTAAGACCCCCGAACCGAAAGGTCCGGGGGTTTTTTTTGACCTTaaaa                                                                                                                             >  2:608582/1‑149 (MQ=255)
                  tGATTAGCCTGGTCGTGATTAGCGTGGTGGTGATTATTATCCCACCGTGCGGGGCTGCACTTGGACGAGGAAAGGCTTAGAGATCAAGCCTTAACGAACTAAGACCCCCGCACCGAAAGGTCCGGGGGTTTTTTTTGACCTTAAAAACa                                                                                                                          >  2:613277/1‑149 (MQ=255)
                     ttAGCCTGGTCGTGATTAGCGTGGTGGTGATTATTATCCCACCGTGCGGGGCTGCACTTGGACGAGGAAAGGCTTAGAGATCAAGCCTTAACGAACTAAGACCCCCGCACCGAAAGGTCCGGGGGTTTTTTTTGACCTTAAAAACATaa                                                                                                                       <  1:361576/149‑1 (MQ=255)
                        gCCTGGTCGTGATTAGCGTGGTGGTGATTATTATCCCACCGTGCGGGGCTGCACTTGGACGAGGAAAGGCTTAGAGATCAAGCCTTAACGAACTAAGACCCCCGCACCGAAAGGTCCGGGGGTTTTTTTTGACCTTAAAAACATAACCg                                                                                                                    <  1:246515/149‑1 (MQ=255)
                           tGGTCGTGATTAGCGTGGTGGTGATTATTATCCCACCGTGCGGGGCTGCACTTGGACGAGGAAAGGCTTAGAGATCAAGCCTTAACGAACTAAGACCCCCGCACCGAAAGGTCCGGGGGTTTTTTTTGACCTTAAAAACATACCGgagg                                                                                                                 >  2:150637/1‑149 (MQ=255)
                           tGGTCGTGATTAGCGTGGTGGTGATTATTATCCCACCGTGCGGGGCTGCACTTGGACGAGGAAAGGCTTAGAGATCAAGCCTTAACGAACTAAGACCCCCGCACCGAAAGGTCCGGGGGTTTTTTTTGACCTTAAAAACATAACCgagg                                                                                                                 >  1:400484/1‑149 (MQ=255)
                              tCGTGATTAGCGTGGTGGTGATTATTATCCCACCGTGCGGGGCTGCACTTGGACGAGGAAAGGCTTAGAGATCAAGCCTTAACGAACTAAGACCCCCGCACCGAAAGGTCCGGGGGTTTTTTTTGACCTTAAAAACATAACCGAGGAGc                                                                                                              >  2:604560/1‑149 (MQ=255)
                                 tGATTAGCGTGGTGGTGATTATTATCCCACCGTGCGGGGCTGCACTTGGACGAGGAAAGGCTTAGAGATCAAGCCTTAACGAACTAAGACCCCCGCACCGAAAGGTCCGGGGGTTTTTTTTGACCTTAAAAACATAACCGAGGAGCAGa                                                                                                           <  1:604560/149‑1 (MQ=255)
                                                                             cTTGGACGAGGAAAGGCTTAGAGATCAAGCCTTAACGAACTAAGACCCCCGCACCGAAAGGTCCGGGGGTTTTTTTTGACCTTAAAAACATAACCGAGGAGCAGACAATGAATAACAGCACAAAATTc                                                                                    >  1:350904/1‑128 (MQ=255)
                                                                             cTTGGACGAGGAAAGGCTTAGAGATCAAGCCTTAACGAACTAAGACCCCCGCACCGAAAGGTCCGGGGGTTTTTTTTGACCTTAAAAACATAACCGAGGAGCAGACAATGAATAACAGCACAAAATTc                                                                                    <  2:350904/128‑1 (MQ=255)
                                                                                  aCGAGGAAAGGCTTAGAGATCAAGCCTTAACGAACTAAGACCCCCGCACCGAAAGGTCCGGGGGTTTTTTTTGACCTTAAAAACATAACCGAGGAGCAGACAATGAATAACAGCACAAAATTCTGTTTCTCAAGATTCAGGACGGGGaa                                                          <  1:644921/149‑1 (MQ=255)
                                                                                  aCGAGGAAAGGCTTAGAGATCAAGCCTTAACGAACTAAGACCCCCGCACCGAAAGGTCCGGGGGTTTTTTTTGACCTTAAAAACATAACCGAGCAGCAAACAATGAATAACAGCAGAAAATTCTGTTTCCCAAGATTCCGGAAgggcac                                                          >  2:695472/1‑146 (MQ=255)
                                                                                      ggAAAGGCTTAAAGATCAAGCCTTAACGAACTAAGACCCCCGCACCGAAAGGGTCGGAGGTAATTTTAGACCTTCAAAACATAACCGAGGAGCAGAAGATGAATAAAAGCCCAAAATTCTTTTTCTCAAGATTCAGCACGGGAaactaa                                                      >  2:560321/1‑149 (MQ=255)
                                                                                       gAAAGGCTTAGAGATCAAGCCTTAACGAACTAAGACCCCCGCACCGAAAGGTCCGGGGGTTTTTTTTGACCTTAAAAACATAACCGAGGAGCAGACAATGAATAACa                                                                                               <  2:95112/107‑1 (MQ=255)
                                                                                       gAAAGGCTTAGAGATCAAGCCTTAACGAACTAAGACCCCCGCACCGAAAGGTCCGGGGGTTTTTTTTGACCTTAAAAACATAACCGAGGAGCAGACAATGAATAACa                                                                                               >  1:95112/1‑107 (MQ=255)
                                                                                              ttAGAGATCAAGCCTTAACGAACTAAGACCCCCGCACCGAAAGGTCCGGGGGTTTTTTTTGACCTTAAAAACATAACCGAGGAGCAGACAATGAATAACAGCACAAAATTCTGTTTCTCAAGATTCAGGACGGGGAACTAACTATGAAt                                              >  1:423778/1‑149 (MQ=255)
                                                                                               tAGAGATCAAGCCTTAACGAACTAAGACCCCCGCACCGAAAGGTCCGGGGTTTTTTTTTGACCTTAAAAACATAACCGAGGAGCAGACAATGAATAACAGCACAAAATTCTGTTTCTCAAGATTGAGGACGGGGAACTAACTATGCATg                                             >  1:742269/1‑149 (MQ=255)
                                                                                               tAGAGATCAAGCCTTAACGAACTAAGACCCCCGCACCGAAAGGTCCGGGGGTTTTTTTGACCTTAAAAACATAACCGAGGAGCAGACAATGAATAACAGCACAAAATTCTGTTTCTCAAGATTCAGGACGGGGAACTAACTATGAATgg                                            <  1:385790/149‑1 (MQ=255)
                                                                                                agagATCAAGCCTTAACGAACTAAGACCCCCGCACCGAAAGGTCCGGGGGTTTTTTTTGACCTTAAAAACATAACCGAGGAGCAGACAATGAATAACAGCACAAAATTCTGTTTCTCAAGATTCCGGACGGGGAACTAACTATGAATgg                                            >  2:15407/1‑149 (MQ=255)
                                                                                                    aTCAAGCCTTAACGAACTAAGACCCCCGCACCGAAAGGTGCGGGGGTTTTTTTTGACCGTAAAAACATAACCGCGGAGCAGACAATGAATAACGGCACAAAATGCTGTTTCTCAGGATTCAGGAGGGGGAACTGACTATGAAGGgcgcg                                        >  1:50806/1‑148 (MQ=255)
                                                                                                      cAAGCCTTAACGAACTAAGACCCCCGCACCGAAAGGTCCGGGGGTTTTTTTTGACCTTAAAAACATAACCGAGGAGCAGACAATGAATAACAGCACAAAATTCTGTTTCTCAAGATTCAGGACGGGGAACTAACTATGAATGGCGcaca                                      <  1:110453/149‑1 (MQ=255)
                                                                                                          ccTTAACGAACTAAGACCCCCGCACCGAAAGGTCCGGGGGTTTTTTTTGACCTTAAAAACATTACCGAGGGGCAGACAATGAATAACAGCACAAAGTTCTGTTTCTCAAGATTGTGGGCGGGGTACTAACTATGCGTGgcgcggggtgg                                  >  2:415400/1‑142 (MQ=255)
                                                                                                                      aaGACCCCCGCACCGAAAGGTCCGGGGGTTTTTTTTGACCTTAAAAACATAACCGAGGAGCAGACAATGAATAACAGCACAAAATTCTGTTTCTCAAGATTCAGGACGGGGAACTAACTATGAATGGCGCACAGTGGGTGGTACATGCg                      >  1:81119/1‑149 (MQ=255)
                                                                                                                        gACCCCCGCACCGAAAGGTACGGGGGTTTTTTTTGACATTAAAAACCTAACCGGGGAGCAGACAATGAATAATGGCACGAAATTCTGTGTCTCAAGTTTCAGGGCGGGGATCTAACTATGAATGGCGCACAGTGGGTGGTACATGCGtt                    <  2:571036/149‑1 (MQ=255)
                                                                                                                           ccccGCACCGAAAGGTCCGGGGGTTTTTTTTGACCTTAAAAACATAACCGAGGAGCAGACAATGAATAACAGCACAAAATTCTGTTTCTCAAGATTCAGGACGGGGAACTAACTATGAATGGCGCACAGTGGGTGGTACATGCGTTGCg                 <  1:697536/149‑1 (MQ=255)
                                                                                                                             ccGCACCGAAAGGTCCGGGGGTTTTTTTTGACCTTAAAAACATAACCGAGGAGCAGACAATGAATAACAGCACAAAATTCTGTTTCTCAAGATTCAGGACGGGGAACTAACTATGAATGGCGCACAGTGGGTGGTACATGCGTTGCggg               >  1:254791/1‑149 (MQ=255)
                                                                                                                                 aCCGAAAGGTCCGGGGGTTTTTTTTGACCTTAAAAACATAACCGAGGAGCAAACAATGAATAACAGGACAAAATTTTGTTTCTCAAGATTCAGGAGGGGGAACTAACTATGAATGGCGCACAGTGGGTGGTACATGCGTTGCGGGaacg           >  1:546231/1‑148 (MQ=255)
                                                                                                                                       aGGTCCGGGGGTTTTTTTTGACCTTAAAAACATAACCGAGGAGCAGACAATGAATAACAGCACAAAATTCTGTTTCTCAAGATTCAGGACGGGGAACTAACTATGAATGGCGCACAGTGGGTGGTACATGCGTTGCGGGCACAGGgtgt     <  2:521169/149‑1 (MQ=255)
                                                                                                                                       aGGTCCGGGGGTTTTTTTTGACCTTAAAAACATAACCGAGGAGCAGACAATGAATAACAGCACAAAATTCTGTTTCTCAAGATTCAGGACGGGGAACTAACTATGAATGGCGCACAGTGGGTGGTACATGCGTTGCGGGCACAGGgtgt     <  1:522161/149‑1 (MQ=255)
                                                                                                                                          tCCGGGGGTTTTTTTTGACCTTAAAAACATAACCGAGGAGCAGACAATGAATAACAGCACAAAATTCTGTTTCTCAAGATTCAGGACGGGGAACTAACTATGAATGGCGCACAGTGGGTGGTACATGCGTTGCGGGCACAGGGTGTGaa  <  2:423778/149‑1 (MQ=255)
                                                                                                                                                   |                                                                                                                                           
TGACAGCCCTTCTACGAGTGATTAGCCTGGTCGTGATTAGCGTGGTGGTGATTATTATCCCACCGTGCGGGGCTGCACTTGGACGAGGAAAGGCTTAGAGATCAAGCCTTAACGAACTAAGACCCCCGCACCGAAAGGTCCGGGGGTTTTTTTTGACCTTAAAAACATAACCGAGGAGCAGACAATGAATAACAGCACAAAATTCTGTTTCTCAAGATTCAGGACGGGGAACTAACTATGAATGGCGCACAGTGGGTGGTACATGCGTTGCGGGCACAGGGTGTGAA  >  NC_000913_3_bme_pgi/3950323‑3950609

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.