New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913_3_bme_pgi	4304576 =	31 (0.700)	3 (0.070)	3/264	6.4	9.4%	intergenic (‑172/+37)	ytcA/yjcS	putative inner membrane efflux pump‑associated DUF1656 family protein/metallo‑beta‑lactamase superfamily protein
	?	NC_000913_3_bme_pgi	4304604 =	29 (0.710)					intergenic (‑200/+9)	ytcA/yjcS	putative inner membrane efflux pump‑associated DUF1656 family protein/metallo‑beta‑lactamase superfamily protein
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

TATCTGTAGTGAATATCAATATCCATTGAAGGCGTCAGTATGGCTATTTTCTTGATGAATAAAAATAGCTTTATTCAGCCACCGCATTCATAACTTATATATTTTATTTATTAATTGGCTGTATATATTTTTAAAATAAATACTTTTGGGGGCTTCAGCGCCCCCAAAAGCGAGTGACATTAATTTGGGGTTACGATATTCACCCACAAATCGAAATTATCCAGACAGGCGATAATTTCTTCCAGTTTCGCGCCATTGCCAATAATTTTGGCTTTCTTCGCTTTT  >  NC_000913_3_bme_pgi/4304434‑4304718                                                                                                                                               |                                                                                                                                               tatCTGTTGTGAATATCAATATCCATTGAAAGCCTCAGTATGGCTATTTTCTTGATGAATAAAAATAGCTTTATTCAGCCACCGCATTCAGAACTTATATAGTTTATTTATCAATTGGCTGTATATATTTTTAAAATAAATACTTTTgg                                                                                                                                          <  1:458879/149‑1 (MQ=255)  atCTGTAGTGATTATCAATATCCATTGAAGGCGTCAGTATGGCTATTTTCTTGATGAATAAAAATAGCTTTATTCAGCCACCGCATTCATAACTTATATATTTTATTTATTAATTGGCTGTATATATTTTTAAAATACATACTTTTggg                                                                                                                                         <  1:596638/149‑1 (MQ=255)  atCTGTAGTGAATATCAAGATCCATTGAAGGGGTCAGTATGGCTATTTTCTTGATGAATAAAAATAGCTTTATTCAGCCACCGCATTCATAACTTATATATTTTATTTATTAATTGGCTGTATATATTTTTAAAATAAATACTTTTggg                                                                                                                                         <  2:301785/149‑1 (MQ=255)         gTGAATATCAATATCCATTGAAGGCGTCAGTATGGCTATTTTCTTGATGAATAAAAATAGCTTTATTCAGCCACCGCATTCATAACTTATATATTTTATTTATTAATTGGCTGTATATATTTTTAAAATAAATACTTTTGGGGGCttta                                                                                                                                  >  2:483614/1‑147 (MQ=255)          tGAATATCAATATCCATTGAAGGCGTCAGTATGGCTATTTTCTTGATGAATAAAAATAGCTTTATTCAGCCACCGCATTCATAACTTATATATTTTATTTATTAATTGGCTGTATATATTTTTAAAATAAATACTTTTGGGGGCTTCAg                                                                                                                                 >  1:643598/1‑149 (MQ=255)               atcaatatcCATTGAAGGCGTCAGTATGGCTATTTTCTTGATGAATAAAAATAGCTTTATTCAGCCACCGCCTTCATAACTTATATATTTTATTTATTAATTGGCTGTATATATTTTTAAAATAAATACTTTTGGGGGCTTCAGCGccc                                                                                                                            >  2:753004/1‑149 (MQ=255)                         aTTGAAGGCGTCAGTATGGCTATTTTCTTGATGAATAAAAATAGCTTTATTCAGCCACCGCATTCATAACTTATATATTTTATTTATTAATTGGCTGTATATATTTTTAAAATAAATACTTTTGGGGGCTTCAGCGCCCCCAAAAGCGa                                                                                                                  <  2:256311/149‑1 (MQ=255)                                   tCAGTATGGCTATTTTCTTGATGAATAAAAATAGCTTTATTCAGCCACCGCATTCATAACTTATATATTTTATTTATTAATTGGCTGTATATATTTTTAAAATAAATACTTTTGGGGGCTTCAGCGCCCCCAAAAGCGAGTGACATTaa                                                                                                        >  1:735720/1‑149 (MQ=255)                                   tCAGTATGGCTATTTTCTTGATGAATAAAAATAGCTTTATTCAGCCACCGCATTCATAACTTATATATTTTATTTATTAATTGGCTGTATATATTTTTAAAATAAATACTTTTGGGGGCTTCAGCGCCCCCAAAAGCGAGTGACATTaa                                                                                                        >  1:735717/1‑149 (MQ=255)                                       tATGGCTATTTTCTTGATGAATAAAAATAGCTTTATTCAGCCACCGCATTCATAACTTATATATTTTATTTATTAATTGGCTGTATATATTTTTAAAATAAATACTTTTGGGGGCTTCAGCGCCCCCAAAAGCGAGTGACATTAATTTg                                                                                                    <  2:735717/149‑1 (MQ=255)                                       tATGGCTATTTTCTTGATGAATAAAAATAGCTTTATTCAGCCACCGCATTCATAACTTATATATTTTATTTATTAATTGGCTGTATATATTTTTAAAATAAATACTTTTGGGGGCTTCAGCGCCCCCAAAAGCGAGTGACATTAATTTg                                                                                                    <  2:735720/149‑1 (MQ=255)                                                tttCTTGATGAATAAAAATAGCTTTATTCAGCCACCGCATTCATAACTTATATACTTTATTTATTAATTGGCTGTATATATTTTTAAAATAAATACTTTTGGGGGCTTCAGCGCCCCCAAAAGCGAGTGACATTAATTTGGGGTTACGa                                                                                           <  1:665774/149‑1 (MQ=255)                                                          aaTAAAAATAGCTTTATTCAGCCACCGCATTCATAACTTATATATTTTATTTATCAATTGGCTGTATATCTTTTTAAAATAAATACTTTCGGGGGATTCAGCGCCCCCAAAAGCGAGTGACATTAATTTGGGGTTACGATATTCAcccc                                                                                 <  2:586044/149‑2 (MQ=255)                                                              aaaaTAGCTTTATTCAGCCACCGCATTCATAACTTATATATTTTATTTATTAATTGGCTGTATATATTTTTAAAATAAATACTTTTGGGGGCTTCAGCGCCCCCAAAAGCGAGTGACATTAATTTGTGGTTACGATATTCACCCACaaa                                                                             >  2:686263/1‑149 (MQ=255)                                                               aaaTAGCTTTATTCAGCCACCGCATTCATAACTTATATATCTTATTAATTAATTGGCTGTATATATTTTTAAAATAAATACTTTTGGGGGCTTCAGCGCCCCCAAAAGCGAGTGACATTAATTTGGGGTTACGATATTCACCCACAAAt                                                                            <  1:754824/149‑1 (MQ=255)                                                                          ttCAGCCACCGCATTCATAACTTATATATTTTATTTATTAATTGGCTGTATATATTTTTAAAATAAATACTTTTGGGGGCTTCAGCGCCCCCAAAAGCGAGTGACATTAATTTGGGGTTACGGTGTTCTCTCTCAAATCGAAATTATcc                                                                 >  1:422717/1‑149 (MQ=255)                                                                           tCAGCCACCGCATTCATAACTTATATATTTTATTTATTAATTGGCTGTATATATTTTTAAAATAAATACTTTTGGGGGCTTCAGCGCCCCCAAAAGCGAGTGACATTAATTTGGGGTTACGATATTCACCCACAAATCGAAATTATCCa                                                                <  2:74940/149‑1 (MQ=255)                                                                           tCAACCACCGCATTCATAACTTGTATATTTTATTTATTAATTGGCTGTATATATTTTTAAAATAAATACTTTTGGGGGCTTCAGCGCCCCCAAAAGCGAGTGACATTAATTTGGGGTTACGATATTCACCCACAAATCGAAATTATCCa                                                                <  2:178042/149‑1 (MQ=255)                                                                                                               ttaATTGGCTGTATATATTTTTAAAATAAATACTTTTGGGGGCTTCAGCGCCCCCAAAAGCGACTGACATTAATTTGTGGTTACGATATTCACCCACAAATCGAAATTATCCAGACAGGCGATAATTTCTTCCAGTTTCGCGCCATTGc                            <  1:686263/149‑1 (MQ=255)                                                                                                                  aTTGGCTGTATATATTTTTAAAATAAATACTTTTGGGGGCTTCAGCGCCCCCAAAAGCGAGTGACATTAATTTGGGGTTACGATATTCACCCACAAATCGAAATTATCCAGACAGGCGATAATTTCTTCCAGTTTCGCGCCATTGCCaa                         >  1:621180/1‑149 (MQ=255)                                                                                                                  aTTGGCTGTATATATTTTTAAAATAAATACTTTTGGGGGCTTCAGCGCCCCCAAAAGCGAGTGACATTAATTTGGGGTTACGATATTCACCCACAAATCGAAATGATCCAGACAGGCGATAATTCCTTCCGGTATCGCTCCCTTGCCaa                         >  2:613312/1‑149 (MQ=255)                                                                                                                       cTGTATATATTTTTAAAATAAATACTTTTGGGGGCTTCAGCGCCCCCAAAAGCGAGTGACATTAATTTGGGGTTACGATATTCAcc                                                                                   <  2:470466/86‑1 (MQ=255)                                                                                                                       cTGTATATATTTTTAAAATAAATACTTTTGGGGGCTTCAGCGCCCCCAAAAGCGAGTGACATTAATTTGGGGTTACGATATTCAcc                                                                                   >  1:470466/1‑86 (MQ=255)                                                                                                                         gTATATATTTTTAAAATAAATACTTTTGGGGGCTTCAGCGCCCCCAAAAGCGAGTGACATTAATTTGGGGTTACGATATTCACCCACAAATCGAAATTATCCAGACAGGCGATAATTTCTTCCAGTTTCGCGCCATTGCCAATAAtttt                  <  1:693744/149‑1 (MQ=255)                                                                                                                          tatataTTTTTAAAATAAATACTTTTGGGGGCTTCAGCGCCCCCAAAAGCGAGTGACATTAATTTGGGGTTACGATATTCACCCACAAATCGAAATTATCCAGACAGGCGATAATTTCTTCCAGTTTCGCGCCATTGCCAATAATTTTg                 <  1:684832/149‑1 (MQ=255)                                                                                                                           atatatTTTTAAAATAAATACTTTTGGGGGCTTCAGCGCCCCCAAAAGCGAGTGACATTAATTTGGGGTTACGATATTCACCCACAAATCGAAATTATCCAGACAGGCGATAATTTCTTCCAGTTTCGCGCCATTGCCAATAATTTTgg                <  2:643598/149‑1 (MQ=255)                                                                                                                                  tttAAAATAAATACTTTTGGGGGCTTCAGCGCCCCCAAAAGCGAGTGACATTAATTTGGGGTTACGATATTCACCCACAAATCGAAATTATCCAGACAGGCGATAATTTCTTCCAGTTTCGCGCCATTGCCAATAATTTTGGCTttctt         >  2:618669/1‑149 (MQ=255)                                                                                                                                   ttAAAATAAATACTTTTGGGGGCTTCAGCGCCCCCAAAAGCGAGTGACATTAATTTGGGGTTACGATATTCACCCACAAATCGAAATTATCCAGACAGGCGATAATTTCTTCCAGTTTCGCGCCATTGCCAATAATTTTGGCTttcttc        <  2:621180/149‑1 (MQ=255)                                                                                                                                      aaataaatACTTTTGGGGGCTTCAGCGCCCCCAAAAGCGAGTGACATTAATTTGGGGTTACGATATTCACCCACAAATCGAAATTATCCAGACAgg                                                          >  1:759608/1‑96 (MQ=255)                                                                                                                                      aaataaatACTTTTGGGGGCTTCAGCGCCCCCAAAAGCGAGTGACATTAATTTGGGGTTACGATATTCACCCACAAATCGAAATTATCCAGACAgg                                                          <  2:759608/96‑1 (MQ=255)                                                                                                                                        aaaactaCTTTTGTGCGCTTCAGCGCCCCCAAAAGCGAGTGATCTTCCATTGGTG‑GACGATACTCACCCACAAATCGAAATTACCCAGACCGGCGATAATTTCTTCCAGTTTCGCGCCATTGCCAATAATTTTGGCTTTCTTCGCtttt  <  1:147360/144‑1 (MQ=255)                                                                                                                                               |                                                                                                                                               TATCTGTAGTGAATATCAATATCCATTGAAGGCGTCAGTATGGCTATTTTCTTGATGAATAAAAATAGCTTTATTCAGCCACCGCATTCATAACTTATATATTTTATTTATTAATTGGCTGTATATATTTTTAAAATAAATACTTTTGGGGGCTTCAGCGCCCCCAAAAGCGAGTGACATTAATTTGGGGTTACGATATTCACCCACAAATCGAAATTATCCAGACAGGCGATAATTTCTTCCAGTTTCGCGCCATTGCCAATAATTTTGGCTTTCTTCGCTTTT  >  NC_000913_3_bme_pgi/4304434‑4304718

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.