New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913_3_bme_pgi	4304576 =	31 (0.700)	3 (0.070)	3/264	6.4	9.4%	intergenic (‑172/+37)	ytcA/yjcS	putative inner membrane efflux pump‑associated DUF1656 family protein/metallo‑beta‑lactamase superfamily protein
	?	NC_000913_3_bme_pgi	4304604 =	29 (0.710)					intergenic (‑200/+9)	ytcA/yjcS	putative inner membrane efflux pump‑associated DUF1656 family protein/metallo‑beta‑lactamase superfamily protein
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

ATTGAAGGCGTCAGTATGGCTATTTTCTTGATGAATAAAAATAGCTTTATTCAGCCACCGCATTCATAACTTATATATTTTATTTATTAATTGGCTGTATATATTTTTAAAATAAATACTTTTGGGGGCTTCAGCGCCCCCAAAAGCGAGTGACATTAATTTGGGGTTACGATATTCACCCACAAATCGAAATTATCCAGACAGGCGATAATTTCTTCCAGTTTCGCGCCATTGCCAATAATTTTGGCTTTCTTCGCTTTTACCAGATCCGCCATTTTGGCTTGTCCGGTC  >  NC_000913_3_bme_pgi/4304458‑4304748                                                                                                                                                   |                                                                                                                                                 aTTGAAGGCGTCAGTATGGCTATTTTCTTGATGAATAAAAATAGCTTTATTCAGCCACCGCATTCATAACTTATATATTTTATTTATTAATTGGCTGTATATATTTTTAAAATAAATACTTTTGGGGGCTTCAGCGCCCCCAAAAGCGa                                                                                                                                                <  2:256311/149‑1 (MQ=255)           tCAGTATGGCTATTTTCTTGATGAATAAAAATAGCTTTATTCAGCCACCGCATTCATAACTTATATATTTTATTTATTAATTGGCTGTATATATTTTTAAAATAAATACTTTTGGGGGCTTCAGCGCCCCCAAAAGCGAGTGACATTaa                                                                                                                                      >  1:735720/1‑149 (MQ=255)           tCAGTATGGCTATTTTCTTGATGAATAAAAATAGCTTTATTCAGCCACCGCATTCATAACTTATATATTTTATTTATTAATTGGCTGTATATATTTTTAAAATAAATACTTTTGGGGGCTTCAGCGCCCCCAAAAGCGAGTGACATTaa                                                                                                                                      >  1:735717/1‑149 (MQ=255)               tATGGCTATTTTCTTGATGAATAAAAATAGCTTTATTCAGCCACCGCATTCATAACTTATATATTTTATTTATTAATTGGCTGTATATATTTTTAAAATAAATACTTTTGGGGGCTTCAGCGCCCCCAAAAGCGAGTGACATTAATTTg                                                                                                                                  <  2:735720/149‑1 (MQ=255)               tATGGCTATTTTCTTGATGAATAAAAATAGCTTTATTCAGCCACCGCATTCATAACTTATATATTTTATTTATTAATTGGCTGTATATATTTTTAAAATAAATACTTTTGGGGGCTTCAGCGCCCCCAAAAGCGAGTGACATTAATTTg                                                                                                                                  <  2:735717/149‑1 (MQ=255)                        tttCTTGATGAATAAAAATAGCTTTATTCAGCCACCGCATTCATAACTTATATACTTTATTTATTAATTGGCTGTATATATTTTTAAAATAAATACTTTTGGGGGCTTCAGCGCCCCCAAAAGCGAGTGACATTAATTTGGGGTTACGa                                                                                                                         <  1:665774/149‑1 (MQ=255)                                  aaTAAAAATAGCTTTATTCAGCCACCGCATTCATAACTTATATATTTTATTTATCAATTGGCTGTATATCTTTTTAAAATAAATACTTTCGGGGGATTCAGCGCCCCCAAAAGCGAGTGACATTAATTTGGGGTTACGATATTCAcccc                                                                                                               <  2:586044/149‑2 (MQ=255)                                      aaaaTAGCTTTATTCAGCCACCGCATTCATAACTTATATATTTTATTTATTAATTGGCTGTATATATTTTTAAAATAAATACTTTTGGGGGCTTCAGCGCCCCCAAAAGCGAGTGACATTAATTTGTGGTTACGATATTCACCCACaaa                                                                                                           >  2:686263/1‑149 (MQ=255)                                       aaaTAGCTTTATTCAGCCACCGCATTCATAACTTATATATCTTATTAATTAATTGGCTGTATATATTTTTAAAATAAATACTTTTGGGGGCTTCAGCGCCCCCAAAAGCGAGTGACATTAATTTGGGGTTACGATATTCACCCACAAAt                                                                                                          <  1:754824/149‑1 (MQ=255)                                                  ttCAGCCACCGCATTCATAACTTATATATTTTATTTATTAATTGGCTGTATATATTTTTAAAATAAATACTTTTGGGGGCTTCAGCGCCCCCAAAAGCGAGTGACATTAATTTGGGGTTACGGTGTTCTCTCTCAAATCGAAATTATcc                                                                                               >  1:422717/1‑149 (MQ=255)                                                   tCAGCCACCGCATTCATAACTTATATATTTTATTTATTAATTGGCTGTATATATTTTTAAAATAAATACTTTTGGGGGCTTCAGCGCCCCCAAAAGCGAGTGACATTAATTTGGGGTTACGATATTCACCCACAAATCGAAATTATCCa                                                                                              <  2:74940/149‑1 (MQ=255)                                                   tCAACCACCGCATTCATAACTTGTATATTTTATTTATTAATTGGCTGTATATATTTTTAAAATAAATACTTTTGGGGGCTTCAGCGCCCCCAAAAGCGAGTGACATTAATTTGGGGTTACGATATTCACCCACAAATCGAAATTATCCa                                                                                              <  2:178042/149‑1 (MQ=255)                                                                                       ttaATTGGCTGTATATATTTTTAAAATAAATACTTTTGGGGGCTTCAGCGCCCCCAAAAGCGACTGACATTAATTTGTGGTTACGATATTCACCCACAAATCGAAATTATCCAGACAGGCGATAATTTCTTCCAGTTTCGCGCCATTGc                                                          <  1:686263/149‑1 (MQ=255)                                                                                          aTTGGCTGTATATATTTTTAAAATAAATACTTTTGGGGGCTTCAGCGCCCCCAAAAGCGAGTGACATTAATTTGGGGTTACGATATTCACCCACAAATCGAAATTATCCAGACAGGCGATAATTTCTTCCAGTTTCGCGCCATTGCCaa                                                       >  1:621180/1‑149 (MQ=255)                                                                                          aTTGGCTGTATATATTTTTAAAATAAATACTTTTGGGGGCTTCAGCGCCCCCAAAAGCGAGTGACATTAATTTGGGGTTACGATATTCACCCACAAATCGAAATGATCCAGACAGGCGATAATTCCTTCCGGTATCGCTCCCTTGCCaa                                                       >  2:613312/1‑149 (MQ=255)                                                                                               cTGTATATATTTTTAAAATAAATACTTTTGGGGGCTTCAGCGCCCCCAAAAGCGAGTGACATTAATTTGGGGTTACGATATTCAcc                                                                                                                 >  1:470466/1‑86 (MQ=255)                                                                                               cTGTATATATTTTTAAAATAAATACTTTTGGGGGCTTCAGCGCCCCCAAAAGCGAGTGACATTAATTTGGGGTTACGATATTCAcc                                                                                                                 <  2:470466/86‑1 (MQ=255)                                                                                                 gTATATATTTTTAAAATAAATACTTTTGGGGGCTTCAGCGCCCCCAAAAGCGAGTGACATTAATTTGGGGTTACGATATTCACCCACAAATCGAAATTATCCAGACAGGCGATAATTTCTTCCAGTTTCGCGCCATTGCCAATAAtttt                                                <  1:693744/149‑1 (MQ=255)                                                                                                  tatataTTTTTAAAATAAATACTTTTGGGGGCTTCAGCGCCCCCAAAAGCGAGTGACATTAATTTGGGGTTACGATATTCACCCACAAATCGAAATTATCCAGACAGGCGATAATTTCTTCCAGTTTCGCGCCATTGCCAATAATTTTg                                               <  1:684832/149‑1 (MQ=255)                                                                                                   atatatTTTTAAAATAAATACTTTTGGGGGCTTCAGCGCCCCCAAAAGCGAGTGACATTAATTTGGGGTTACGATATTCACCCACAAATCGAAATTATCCAGACAGGCGATAATTTCTTCCAGTTTCGCGCCATTGCCAATAATTTTgg                                              <  2:643598/149‑1 (MQ=255)                                                                                                          tttAAAATAAATACTTTTGGGGGCTTCAGCGCCCCCAAAAGCGAGTGACATTAATTTGGGGTTACGATATTCACCCACAAATCGAAATTATCCAGACAGGCGATAATTTCTTCCAGTTTCGCGCCATTGCCAATAATTTTGGCTttctt                                       >  2:618669/1‑149 (MQ=255)                                                                                                           ttAAAATAAATACTTTTGGGGGCTTCAGCGCCCCCAAAAGCGAGTGACATTAATTTGGGGTTACGATATTCACCCACAAATCGAAATTATCCAGACAGGCGATAATTTCTTCCAGTTTCGCGCCATTGCCAATAATTTTGGCTttcttc                                      <  2:621180/149‑1 (MQ=255)                                                                                                              aaataaatACTTTTGGGGGCTTCAGCGCCCCCAAAAGCGAGTGACATTAATTTGGGGTTACGATATTCACCCACAAATCGAAATTATCCAGACAgg                                                                                        <  2:759608/96‑1 (MQ=255)                                                                                                              aaataaatACTTTTGGGGGCTTCAGCGCCCCCAAAAGCGAGTGACATTAATTTGGGGTTACGATATTCACCCACAAATCGAAATTATCCAGACAgg                                                                                        >  1:759608/1‑96 (MQ=255)                                                                                                                aaaactaCTTTTGTGCGCTTCAGCGCCCCCAAAAGCGAGTGATCTTCCATTGGTG‑GACGATACTCACCCACAAATCGAAATTACCCAGACCGGCGATAATTTCTTCCAGTTTCGCGCCATTGCCAATAATTTTGGCTTTCTTCGCtttt                                <  1:147360/144‑1 (MQ=255)                                                                                                                        ttttGGGGGCTTCAGCGCCCCCAAAAGCGAGTGACATTAATTTGGGGTTACGATATTCACCCACAAATCGAAATTATCCAGACAGGCGATACTTTCTTCCAGTTTCGCGCCATTGCCAATAATTTTGGCTTTCTTCGCTTTTACCAGAt                         >  1:85025/1‑149 (MQ=255)                                                                                                                          ttGGTGTCTTCAGCGCCCCCAAAAGCGAGTGACATTAATTGCGGTTTACGATATTCACCCACAAATCGAAATTATCCAGACAGGCGATAATTTCTTCCAGTTTCGCGCCATTGCCAATAATTTTGGCTTTCTTCGCTTTTACCAGATcc                       <  2:216521/149‑1 (MQ=255)                                                                                                                             ggggCTTCAGCGCCCCCAAAAGCGAGTGACATTAATTTGGGGTTACGATATTCACCCACAAATCGAAATTATCCAGACAGGCGATAATTTCTTCCAGTTTCGCGCCATTGCCAATAATTTTGGCTTTCTTCGCTTTTACCAGATCGGcc                    >  1:483408/1‑149 (MQ=255)                                                                                                                                      gcgcCCCCAAAAGCGAGTGACATTAATTTGGGGTTACGATATTCACCCACAAATCGAAATTATCCAGACAGGCGATAATTTCTTCCAGTTTCGCGCCATTGCCAATAATTTTGGCTTTCTTCGCTTTTACCAGATCCGCCATTTTGGCt           >  2:705685/1‑149 (MQ=255)                                                                                                                                          ccccAAAAGCGAGTGACATTAATTTGGGGTTACGATATTCACCCACAAATCGAAATTATCCAGACAGGCGATAATTTCTTCCAGTTTCGCGCCATTGCCAATAATTTTg                                               <  1:717213/109‑1 (MQ=255)                                                                                                                                          ccccAAAAGCGAGTGACATTAATTTGGGGTTACGATATTCACCCACAAATCGAAATTATCCAGACAGGCGATAATTTCTTCCAGTTTCGCGCCATTGCCAATAATTTTg                                               >  2:717213/1‑109 (MQ=255)                                                                                                                                          ccccAAAAGCGAGTGACATTAATTTGGGGTTACGATATTCACCCACAAATCGAAATTATCCAGACAGGCGATAATTTCTTCCAGTTTCGCGCCATTGCCAATAATTTTGGCTTTCTTCGCTTTTACCAGATCCGCCATTTTGGCTTGTc       <  1:125700/149‑1 (MQ=255)                                                                                                                                              aaaaGCGAGGGACATTAATTTGGGGTTACGATATTCACCCACAAATCGAAATTATCCAGACAGGCGATAATTTCTTCCAGTTTCGCGCCATTGCCAATAATTTTGGCTTTCTTCGCTTTTACCAGATCCGCCATTTTGGCTTGTCCGGt   <  1:630121/149‑1 (MQ=255)                                                                                                                                               aaaGCGAGTGACATTAATTTGGGGTTACGATATTCACCCACAAATCGAACTTATCCAGACAGGCGATAATTTCTTCCAGTTTCGCGCCATTGCCAATAATTTTGGCTTTCTTCGCTTTTACCAGATCCGCCATTTTGGCTTGTCCGGTc  >  2:476425/1‑149 (MQ=255)                                                                                                                                                   |                                                                                                                                                 ATTGAAGGCGTCAGTATGGCTATTTTCTTGATGAATAAAAATAGCTTTATTCAGCCACCGCATTCATAACTTATATATTTTATTTATTAATTGGCTGTATATATTTTTAAAATAAATACTTTTGGGGGCTTCAGCGCCCCCAAAAGCGAGTGACATTAATTTGGGGTTACGATATTCACCCACAAATCGAAATTATCCAGACAGGCGATAATTTCTTCCAGTTTCGCGCCATTGCCAATAATTTTGGCTTTCTTCGCTTTTACCAGATCCGCCATTTTGGCTTGTCCGGTC  >  NC_000913_3_bme_pgi/4304458‑4304748

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.