New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913_3_bme_pgi	= 1343169	43 (0.920)	3 (0.060)	3/272	NT	6.5%	coding (160/219 nt)	osmB	osmotically and stress inducible lipoprotein
	?	NC_000913_3_bme_pgi	= 1343191	44 (0.940)					coding (138/219 nt)	osmB	osmotically and stress inducible lipoprotein

TTTTACTGTGCGTATTATTCAGTTATTTCGTACTGAACAGAATCAAGCGTATTATAATTGCGAGTCGATAATCGACATTTATTTACGATTATTTACCGACCTGGTGACCAATAACACCTCCGACAGCTGCACCACCTAATGTACCCAACGTACTGCCATCGGTCAGTACTGCACCGCCTAATGCCCCTGCACCCGCGCCGATTGCGGTGTTGCGGTCCCGTTTAGACCAGTTAGAACAGGCACTCAGAGACATTGCCAAAGTAATTGCCAGAACAGCCGCGGTCATTTTTTTGC  >  NC_000913_3_bme_pgi/1343022‑1343315                                                                                                                                                    |                                                                                                                                                   ttttACTGTGCGTATTATTCAGTTATTTCGTACTGAACAGAATCAAGCGTATTATAATTGCGAGTCGATAATCGACATTTATTTACGATTATTTACCGACCTGGTGACCAATAACACCTCCGACAGCTGCACCACCTAATGTACCCAAc                                                                                                                                                   <  1:736180/149‑1 (MQ=255) ttatACTGTGCGTATTATTCAGTTATTTCGTACTGAACAGAATCAAGCGTATTATAATTGCGAGTCGATAATCGACATTTATTTACGATTATTTACCGACCTGGTGACCAATAACACCTCCGACAGCTGCACCACCTAATGTACCCAAc                                                                                                                                                   <  1:382920/146‑1 (MQ=255)            gTATTATTCAGTTATTTCGTACTGAACAAAATCAAGCGTATTATAATTGAGAGTCGATAATCGACATTTATTTACGATTATTTACCGACCTGGTGACCAATAACACCTCAGACCACTGCACACCCTAATGTACCCAACGCACTGcacac                                                                                                                                        >  2:600446/1‑145 (MQ=255)               ttattCAGTTATTTCGTACTGAACAGAATCACGCGTATTATAATTGCGAGTCGATAATCGACATTTATTTACGATTACGTACCGACCTGGTGACCAATAACAGCTCCGTCAGCTGCACCACCTAATGTACCCAACGTACTGCCATCGGt                                                                                                                                     <  2:827366/149‑1 (MQ=255)                 attCAGTTATTTCGTATTGACCAGAACAAAGCGTATTATAATTGCGAGTCGATATTCGACATTTTTGAACGATTATTTACCGACCTGGTGACAAATAACACATCCGACAGCTGCACCCCCTAATGTACCCAACGTACTGCCATCGGTCa                                                                                                                                   <  1:386856/149‑1 (MQ=255)                        tATTTCGTACTGAACAGAATCAAGTGTATTATAATTGCGAGTCCATAATCGACATTTATTTACGATTATTTACCGACCTGGTGACCAATAACACCTCCGACAGCTGCACCACCTAATGTACCCAACGTACTGCCATCGGTCAGTACTGc                                                                                                                            <  2:263927/149‑1 (MQ=255)                         aTTTCGTACTTAACAGAATCAAGCGTATTATAATTGCGAGTCGATAATCGATATTTATTTACGATTATTTACCGACCTGGTGACCAATAACACCTCCGACAGCTGCACCACCTAATGTACCCAAcgtactgaccgatggcagtacgttg                                                                                                                           <  2:314625‑M1/149‑26 (MQ=255)                         aTTTCGTACTGAACAGAATCAAGCGTATTATAATTGCGAGTCGATAATCGACATTTATTTACGATTATTTACCGACCTGGTGACCAATAACACCTCCGACAGCTGCACCACCTAATGTACCCAACGTACTGCCATCGGTCAGTACTGCa                                                                                                                           <  2:664760/149‑1 (MQ=255)                                    aaCAGAATCAAGCATATAATGATTGCGAGTCGATAATCGACATTTATTTACGATTATTTACCGACCTGGTTAACAATAACACTTCCGACAGCTGCACCACCTAATGTACCCAACGTAATACCATCGGTCAGTACTTCACCGCCTCATGc                                                                                                                >  2:82154/1‑149 (MQ=255)                                            gaaGCGTATTATAATTGCGAGTCGATAACCGACATTTATTTACGATTATTTACCGACCTGGTGACCAATAACACCTCCGACAGCCGCACCACCTAATGTACCCAACGTACTGCCATCGGTCAGTACTGCACCGCCTAATGCCCCTGCAc                                                                                                        <  2:295371/148‑1 (MQ=255)                                             aaGCGTATTATAATTGCGAGTCGATAATCGACATTTATTTACGATTATTTACCGACCTGGTGACCAATAACACCTCCGACAACTGCACCACCTAATGTACCCAACATACTACCATCGGTCAGTACTGCACCGCCTAATGCCCCTGCAcc                                                                                                       >  1:361730/1‑149 (MQ=255)                                                  tattatAATTGCGAGTCGATAATCGACATTTATTTACGATTATTTACCGACCTGGTGACCAATAACACCTCCGACAGCTGCACCACCTAATGTACCCAACGTACTGCCATCGGTCAGTACTGCACCGCCTAATGCCCCTGCACCCgcgc                                                                                                  >  1:703727/1‑149 (MQ=255)                                                    ttatAATTGCGAGTCGATAATCGACATTTATTTACGATTATTTACCGACCTGGTGACCAATAACACCTCCGACAGCTGCACCACCTAATGTACCCAACGTACTGCCATCGGTCCGTACTGCACCGCCTAATGCCCCTGCACCCGCGCCg                                                                                                >  1:375733/1‑149 (MQ=255)                                                    ttatAATTGCGAGTCGATAATCGACATTTATTTACGATTATTTACCGACCTGGTGACCAATAACACCTCCGACAGCTGCACCACCTAATGTACCCAACGTACTGCCATCGGTCAGTACTGCACCGCCTAATGCCCCTGCACCCGCGCCg                                                                                                >  1:747746/1‑149 (MQ=255)                                                    ttatAATTGCGAGTCGATAATCGACATTTATTTACGATTATTTACCGACCTGGTGACCAATAACACCTCCGACAGCTGCACCACCTAATGTACACAACGTACTGCCATCGGTCAGTACATCACCGCCTCATGCCCCTGCACCCGCACCg                                                                                                >  2:35007/1‑149 (MQ=255)                                                          ttGCGAGTCGATAATCGACATTTATTTACGATTATTTACCGACCTGGTGACCAATAACACCTCCGACAGCTGCACCACCTAATGTACCCAAagtactgaccgatggcagtacgttgggtacattaggtggtgcag                                                                                                        >  1:796804‑M1/1‑91 (MQ=255)                                                          ttGCGAGTCGATAATCGACATTTATTTACGATTATTTACCGACCTGGTGACCAATAACACCTCCGACAGCTGCACCACCTAATGTACCCAAagtactgaccgatggcagtacgttgggtacattaggtggtgcag                                                                                                        <  2:796804‑M1/135‑45 (MQ=255)                                                             cGAGTCGATAATCGACATTTATTTACGATTATTTACCGACCTGGTGACCAATAACACCTCCGACAGCTGCACCACCTAATGTACCCAACGTACTGCCATCGGTCAGTACTGCACCGCCTAATGCCCCTGCACCCCCGCCGATTGCGgtg                                                                                       >  2:885095/1‑149 (MQ=255)                                                                gTCGATAATCGACATTTATTTACGATTATTTACCGACCTGGTGACCAATAACACCTCCGACAGCTGCACCACCTAATGTACCCAACGTACTGCCATCGGTCAGTACTGCACCGCCTAATGCCCCTGCACCCGCGCCGATTGCGGGGTTg                                                                                    >  1:162428/1‑149 (MQ=255)                                                                    aTAATCGACATTTATTTACGATTATTTACCGACCTGGTGACCAATAACACCTCCGACAGCTGCACCACCTAATGTACCCAACGTACTTCCATCGTCCATTACTACACCGCCTAATGCCCCTGCACACGCGCAGATTGCGGGTTTGCgtt                                                                                >  1:343636/1‑147 (MQ=255)                                                                     tAATCGACATTTATTTACGATTATTTACCGACCTGGTGACCAATAACACCTCCGACAGCTGCACCACCTAATGTACCCAACGTACTGCCATCGGTCAGTACTGCACCGCCTAATGCCCCTGCACCCGCGCCGATTGCGGTGTTGCGGTc                                                                               >  1:530017/1‑149 (MQ=255)                                                                     tAATCGACATTTATTTACGATTATTTACCGACCTGGTGACCAATAACACCTCCGACAGCTGCACCACCTAATGTACCCAACGTACTGCCATCGGTCAGTACTACACCGCCTAATGCACCTGCACCCGCGCCAATTGCGGTGTTGCGGTc                                                                               >  1:548706/1‑149 (MQ=255)                                                                            cATCTATTTACGATTATTTACCGACCTGGTGACCAATAACACCTCTGACAGCTGCACCACCTAATGTACCCAACGTACTGCCGGCGGTCAGTACTGCACCGCCTAATGCCCCTGCACCCGCGCCGATTGCGGTGTTGCGGTCCCGTTTa                                                                        <  2:172181/149‑1 (MQ=255)                                                                             atttatttACGATTATTTACCGACCTGGTGACCAATAACACCTCCGACAGCTGCACCACCTAATGTACCCAACGTACTGCCATCGGTCAGTACTGCACCGCCTAATGCCCCTGCACCCGCGCCGATTGCGGTGTTGCGGTCCCGTTTAg                                                                       >  1:417308/1‑149 (MQ=255)                                                                             atttatttACGATTATTTACCGACATGGTGACCAATAACACCTCCGACAGCTGCACCACCTAATGTACCCAACGTACTGCCATCGGTCAGTACTGCACCGCCTAATGCCCCTGCACCCGCGCCGATTGCGGTGTTGCGGTCCCGTTTAg                                                                       >  1:779776/1‑149 (MQ=255)                                                                             atttatttACGATTATTTACCAACCTAGTGACCAATAACACCTCCGACAGCTGCACCACCTAATGTACCCAACGTACTGCCATCGGTCAGTACTGCACCGCCTAATGCCCATTCACAAGCGCGGCTTTCAGTGTTGCGGTCCCGtttgc                                                                       >  2:184339/1‑147 (MQ=255)                                                                              tttatttaCGATTATTTACCGACCTGGTGACCAATAACACCTCCGACAGCTGCACCACCTAATGTACCCAACGTACTGCCATCGGTCAGTACTGCACCGCCTAATGCCCCTGCACCCGCGCCGATTGCGGTGTTGCGGTCCCGTTTAGa                                                                      <  2:703727/149‑1 (MQ=255)                                                                                 atttaCGATTATTTACCTACCTGGTGACCAATAACACTTCCGACAGCTGCACCACCTAATGTACCCAACGTACTGCCATCGGTCAGTACTGCACCGCCTAATGCCCCTGCACCCGCGCCGCTTGCGGTGTTGCGGTCCCGTTTAGACCa                                                                   <  1:353692/149‑1 (MQ=255)                                                                                  tttaCGATTATTTACCGACCTGGTGACCAATAACACCTCCGACAGCTGCACCACCGAAGGTACCCAACGTACTGCCATCGGTCAGTACTGCACCGCCTAATGCCCCTGCACCCACGCCGATTGCGGTGTTCCGGTCCCGTTTAGACCAg                                                                  >  1:30861/1‑149 (MQ=255)                                                                                  tttaCGATTATTTACCGACCTGGTGACCAATAACACCTACGACAGCTGCACCACCTAATGTACCCAACGTACTGCCATCGGTCAGTGATAAGGCACCGAAATCCCCTGCACCCACGCCGATTGCGGTGTTGCGGTCCCGTTTAGACCAg                                                                  >  1:429744/1‑149 (MQ=255)                                                                                   tcaCGATTATTTACCGACCTGGTGACCAATAACACCTCCGACAGCTGCACCACCTAATGTACCCAACCTACTGCCCTCGGTCAGTACTGCACCGCCTAATGCCCCTGCACCCGCGCCGATTGCGGTGTTGCGGTCCCGTTTAGACCAGt                                                                 <  2:523188/147‑1 (MQ=255)                                                                                       gATTATTTACCGACCTGGTGACCAATAACACCTCCGACAGCTGCACCACCTAATGTACCCAACGTACTGCCATCGGTCAGTACTGCACCGCCTAATGCCCCTGCACCCGCGCCGATTGCGGTGTTGCGGTCCCGTTTAGACCAGTTAGa                                                             >  2:711884/1‑149 (MQ=255)                                                                                                    ccTGGTGACCAAAAGCACTGCCGACAGCTGCACCACCTAATGTACCCAACGTACTGCCATCGGTCAGTACTGCACCGCCTAATGCCCCTGCACCCGCGCCGATTGCGGTGTTGCGGTCCCGTTTAGACAAGTTAGAACAGGCACTCaga                                                <  2:713415/149‑1 (MQ=255)                                                                                                      tGGTGACCAATAACACCTCCGACAGCTGCACCACCTAATGTACCCAACGTACTGCCATCGGTCAGTACTGCACCGCCTAATGCCCCTGCACCCGCGCCGATTGCGGTGTTGCGGTCCCGTTTAGACCAGTTAGAACAGGCACTCAgaga                                              <  2:779776/149‑1 (MQ=255)                                                                                                          gACCAATAACACCTCCGACAGCTGCACCACCTAATGTACCCAACGTACTGCCATCGGTCAGTACTGCACCGCCTAATGCCCCTGCACCCGCGCCGATTGCGGTGTTGCGGTCGCGTTTAGACCAGTTAGTACAGCCACCCAgagaactt                                          >  2:401616/1‑145 (MQ=255)                                                                                                            ccAATAACACCTCCGACAGCTGCACCACCTAATGTACCCAACGTACTGCCATCGGTCAGTACTGCACCGCCTAATGCCCCTGCACCCGCGCCGATTGCGGTGTTGCGGTCCCGTTTAGACCAGTTACAACAGGCACACAGAGACATTGc                                        >  1:609277/1‑149 (MQ=255)                                                                                                             cAATAACACCTCCGGCAGCTGCACCACCTAATGTACCCAACGTATTGCCATCGGTCAGTACTGCACCGCCTAATGCCCCTGCACCCGCGCCGATTGCGGTGTTGCGGTCCCGTTTAGACCAGTTAGAACAGGCACTCAGAGACATTGcc                                       <  1:71624/149‑1 (MQ=255)                                                                                                              aaTAACACCTCCGACAGCTGCACCACCTAATGTACCCAACGTACTGCCATCGGTCAGTACTGCACCGCCTAATGCCCCTGCACCCGCGCCGATTGAGGTGTTGCGGTCCCGTTTAGACCAGTTAGAACAAGCACTCAGAGACATTGCCa                                      >  1:569325/1‑149 (MQ=255)                                                                                                               aTAACACCTCCGACAGCTGCACCACCTAATGTACCCAACGTACTGCCATCGGTCAGTACTGCACCGCCTAATGCCCCTGCACCCGCGCCGATTGCGGTGTTGCGGTCCCGTTTAGACCAGTTAGAACAGGCACCCAGAGACATAGccca                                     >  2:342081/1‑147 (MQ=255)                                                                                                                tAACACCTCCGACAGCTGCACCACCTAATGTACCCAACGTACTGCCATCGATCAGTACTGCACCGCCTACTGCCCCTGCACCCGCGCCGATTGCGGCGTAGCGGTCCCGGTTAGACCCGTTAGAACAGGCACTCAGAAACATTGCCaaa                                    >  2:271797/1‑149 (MQ=255)                                                                                                                      cTCCGACAGCTGCACCACCTAATGTACCCAACGTACTGCCATCGGTCAGTACTGCACCGCCTAATGCCCCTGCACCCGCGCCGATTGCGGTGTTGCGGTCCCGTTTAGACCAGTTAGAACAGGCACTCAGAGACATTGCCAAAGAAAtt                              >  1:765281/1‑149 (MQ=255)                                                                                                                       tCCGACAGCTGCACCACCTAATGTACCCAACGTACTGCCATCGGTCAGTACTGCACCGCCTAATGCCCCTGCACCCGCGCCGATTGCGGTGTTGCGGTCCCGATTAAACCAGTTAGAACAGGCACTCAGAGACATTGCCAAAGTAATTg                             >  1:567075/1‑149 (MQ=255)                                                                                                                               cTGCACCACCTAATGTACCCAACGTACTGCCATCGGTCAGTACTttgggtacattaggtggtgcagctgtcggaggtgttattggtcaccaggtcggtaaataatcgtaaataaatgtcgattatcgactcgcaa                                   <  2:796804‑M2/135‑92 (MQ=255)                                                                                                                               cTGCACCACCTAATGTACCCAACGTACTGCCATCGGTCAGTACTttgggtacattaggtggtgcagctgtcggaggtgttattggtcaccaggtcggtaaataatcgtaaataaatgtcgattatcgactcgcaa                                   >  1:796804‑M2/1‑44 (MQ=255)                                                                                                                                        cTAATGTACCCAACGTACTGCCATCGGTCAGTACTGCACCGCCTAATGCCCCTGCACCCGCGCCGATTGCGGTGTTGCGGTCCCGTTTAGACCGGTTAGAACAGGCACTCAGAGACATTGCCAAAGTAATTGCCAGAACAGCCGCGGTc            >  2:545810/1‑149 (MQ=255)                                                                                                                                         tAATGTACCCAACGTACTGCCATCGGTCAGTACTGCACCGCCTAATGCCCCTGCACCCGCGCCGATTGCGGTGTTGCGGTCCCTTTTAGACCAGTTAGAACAGGCACTCAGAGACGTTGCCAAAGTAATTGCCAGAACACCCGCCGTCa           >  2:166575/1‑149 (MQ=255)                                                                                                                                         tAATGTACCCAACGTACTGCCATCGGTCAGTACTGCACCGCCTAATGCCCCTGCACCCGCGCCGATTGCGGTGTTGCGGTCCCGTTTAGACCAGTTAGAACAGGCACTCAGAGACATTGCCAAAGTAATTGCCAGAACAGCCGCGGTCa           >  1:42256/1‑149 (MQ=255)                                                                                                                                         tAATGTACCCAACGTACTGCCATCGGTCAGTACTGCACCGCCTAATGCCCCTGCACCCGCGCCGATTGCCGTGTTGCGGTCCCGTTTAGACCAGTTAGAACAGGCACTCAGAGACATTGCCAAAGTAATTGCCAGAACAGCCGCGGTCa           >  1:683461/1‑149 (MQ=255)                                                                                                                                            tGTACCCAACGTACTGCCATCGGTCAGTACTGCACCGCCTAATGCCCCTGCACCCGCGCCGATTGCGGTGTTGCGGTCCCGTTTAGACCAGTTAGAACAGGCACTCAGAGACATTGCCAAAGTAATTGCCAGAACAGCCGCGGTCAttt        >  1:539463/1‑149 (MQ=255)                                                                                                                                            tGTACCCAACGTACTGCCATCGGTCAGTACTGCACCGCCTAATGCCCCTGCACCCGCGCCGATTGCGGTGTTGCGGTCCCGTTTAGACCAGTTAAAACAGGCACTCAGAGACATTGCCAAAGTAATTGCCAGAACAACCGCGCTCAttt        >  1:82276/1‑149 (MQ=255)                                                                                                                                                 ccAACGTACTGCCATCGGTCAGTACTGCACCGCCTAATGCCCCTGCACCCGCGCCGATTGCGGTGTTGCGGTCCCGTTTAGACCAGTTAGAACAGGCACTCAGAGACATTGCCAAAGTAATTACCAGAACAGCCGCGGTCATTTTTTTg   >  1:512650/1‑149 (MQ=255)                                                                                                                                                  cAACGTACTGCCATCGGTCAGTACGttgggtacattaggtggtgcagctgtcggaggtgttattggtcaccaggtcggtaaataatcgtaaataaatatcgattatcgactcgcaattataatacgcttgattctgttaagtacgaaat  <  2:314625‑M2/149‑125 (MQ=255)                                                                                                                                                    |                                                                                                                                                   TTTTACTGTGCGTATTATTCAGTTATTTCGTACTGAACAGAATCAAGCGTATTATAATTGCGAGTCGATAATCGACATTTATTTACGATTATTTACCGACCTGGTGACCAATAACACCTCCGACAGCTGCACCACCTAATGTACCCAACGTACTGCCATCGGTCAGTACTGCACCGCCTAATGCCCCTGCACCCGCGCCGATTGCGGTGTTGCGGTCCCGTTTAGACCAGTTAGAACAGGCACTCAGAGACATTGCCAAAGTAATTGCCAGAACAGCCGCGGTCATTTTTTTGC  >  NC_000913_3_bme_pgi/1343022‑1343315

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.