New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913_3_bme_pgi	= 1343169	43 (0.920)	3 (0.060)	3/272	NT	6.5%	coding (160/219 nt)	osmB	osmotically and stress inducible lipoprotein
	?	NC_000913_3_bme_pgi	= 1343191	44 (0.940)					coding (138/219 nt)	osmB	osmotically and stress inducible lipoprotein

TATTTCGTACTGAACAGAATCAAGCGTATTATAATTGCGAGTCGATAATCGACATTTATTTACGATTATTTACCGACCTGGTGACCAATAACACCTCCGACAGCTGCACCACCTAATGTACCCAACGTACTGCCATCGGTCAGTACTGCACCGCCTAATGCCCCTGCACCCGCGCCGATTGCGGTGTTGCGGTCCCGTTTAGACCAGTTAGAACAGGCACTCAGAGACATTGCCAAAGTAATTGCCAGAACAGCCGCGGTCATTTTTTTGCTCGTTACAAACATAATACTCTC  >  NC_000913_3_bme_pgi/1343045‑1343337                                                                                                                                                   |                                                                                                                                                   tATTTCGTACTGAACAGAATCAAGTGTATTATAATTGCGAGTCCATAATCGACATTTATTTACGATTATTTACCGACCTGGTGACCAATAACACCTCCGACAGCTGCACCACCTAATGTACCCAACGTACTGCCATCGGTCAGTACTGc                                                                                                                                                  <  2:263927/149‑1 (MQ=255)  aTTTCGTACTGAACAGAATCAAGCGTATTATAATTGCGAGTCGATAATCGACATTTATTTACGATTATTTACCGACCTGGTGACCAATAACACCTCCGACAGCTGCACCACCTAATGTACCCAACGTACTGCCATCGGTCAGTACTGCa                                                                                                                                                 <  2:664760/149‑1 (MQ=255)             aaCAGAATCAAGCATATAATGATTGCGAGTCGATAATCGACATTTATTTACGATTATTTACCGACCTGGTTAACAATAACACTTCCGACAGCTGCACCACCTAATGTACCCAACGTAATACCATCGGTCAGTACTTCACCGCCTCATGc                                                                                                                                      >  2:82154/1‑149 (MQ=255)                     gaaGCGTATTATAATTGCGAGTCGATAACCGACATTTATTTACGATTATTTACCGACCTGGTGACCAATAACACCTCCGACAGCCGCACCACCTAATGTACCCAACGTACTGCCATCGGTCAGTACTGCACCGCCTAATGCCCCTGCAc                                                                                                                              <  2:295371/148‑1 (MQ=255)                      aaGCGTATTATAATTGCGAGTCGATAATCGACATTTATTTACGATTATTTACCGACCTGGTGACCAATAACACCTCCGACAACTGCACCACCTAATGTACCCAACATACTACCATCGGTCAGTACTGCACCGCCTAATGCCCCTGCAcc                                                                                                                             >  1:361730/1‑149 (MQ=255)                           tattatAATTGCGAGTCGATAATCGACATTTATTTACGATTATTTACCGACCTGGTGACCAATAACACCTCCGACAGCTGCACCACCTAATGTACCCAACGTACTGCCATCGGTCAGTACTGCACCGCCTAATGCCCCTGCACCCgcgc                                                                                                                        >  1:703727/1‑149 (MQ=255)                             ttatAATTGCGAGTCGATAATCGACATTTATTTACGATTATTTACCGACCTGGTGACCAATAACACCTCCGACAGCTGCACCACCTAATGTACCCAACGTACTGCCATCGGTCCGTACTGCACCGCCTAATGCCCCTGCACCCGCGCCg                                                                                                                      >  1:375733/1‑149 (MQ=255)                             ttatAATTGCGAGTCGATAATCGACATTTATTTACGATTATTTACCGACCTGGTGACCAATAACACCTCCGACAGCTGCACCACCTAATGTACCCAACGTACTGCCATCGGTCAGTACTGCACCGCCTAATGCCCCTGCACCCGCGCCg                                                                                                                      >  1:747746/1‑149 (MQ=255)                             ttatAATTGCGAGTCGATAATCGACATTTATTTACGATTATTTACCGACCTGGTGACCAATAACACCTCCGACAGCTGCACCACCTAATGTACACAACGTACTGCCATCGGTCAGTACATCACCGCCTCATGCCCCTGCACCCGCACCg                                                                                                                      >  2:35007/1‑149 (MQ=255)                                      cGAGTCGATAATCGACATTTATTTACGATTATTTACCGACCTGGTGACCAATAACACCTCCGACAGCTGCACCACCTAATGTACCCAACGTACTGCCATCGGTCAGTACTGCACCGCCTAATGCCCCTGCACCCCCGCCGATTGCGgtg                                                                                                             >  2:885095/1‑149 (MQ=255)                                         gTCGATAATCGACATTTATTTACGATTATTTACCGACCTGGTGACCAATAACACCTCCGACAGCTGCACCACCTAATGTACCCAACGTACTGCCATCGGTCAGTACTGCACCGCCTAATGCCCCTGCACCCGCGCCGATTGCGGGGTTg                                                                                                          >  1:162428/1‑149 (MQ=255)                                             aTAATCGACATTTATTTACGATTATTTACCGACCTGGTGACCAATAACACCTCCGACAGCTGCACCACCTAATGTACCCAACGTACTTCCATCGTCCATTACTACACCGCCTAATGCCCCTGCACACGCGCAGATTGCGGGTTTGCgtt                                                                                                      >  1:343636/1‑147 (MQ=255)                                              tAATCGACATTTATTTACGATTATTTACCGACCTGGTGACCAATAACACCTCCGACAGCTGCACCACCTAATGTACCCAACGTACTGCCATCGGTCAGTACTGCACCGCCTAATGCCCCTGCACCCGCGCCGATTGCGGTGTTGCGGTc                                                                                                     >  1:530017/1‑149 (MQ=255)                                              tAATCGACATTTATTTACGATTATTTACCGACCTGGTGACCAATAACACCTCCGACAGCTGCACCACCTAATGTACCCAACGTACTGCCATCGGTCAGTACTACACCGCCTAATGCACCTGCACCCGCGCCAATTGCGGTGTTGCGGTc                                                                                                     >  1:548706/1‑149 (MQ=255)                                                     cATCTATTTACGATTATTTACCGACCTGGTGACCAATAACACCTCTGACAGCTGCACCACCTAATGTACCCAACGTACTGCCGGCGGTCAGTACTGCACCGCCTAATGCCCCTGCACCCGCGCCGATTGCGGTGTTGCGGTCCCGTTTa                                                                                              <  2:172181/149‑1 (MQ=255)                                                      atttatttACGATTATTTACCGACCTGGTGACCAATAACACCTCCGACAGCTGCACCACCTAATGTACCCAACGTACTGCCATCGGTCAGTACTGCACCGCCTAATGCCCCTGCACCCGCGCCGATTGCGGTGTTGCGGTCCCGTTTAg                                                                                             >  1:417308/1‑149 (MQ=255)                                                      atttatttACGATTATTTACCGACATGGTGACCAATAACACCTCCGACAGCTGCACCACCTAATGTACCCAACGTACTGCCATCGGTCAGTACTGCACCGCCTAATGCCCCTGCACCCGCGCCGATTGCGGTGTTGCGGTCCCGTTTAg                                                                                             >  1:779776/1‑149 (MQ=255)                                                      atttatttACGATTATTTACCAACCTAGTGACCAATAACACCTCCGACAGCTGCACCACCTAATGTACCCAACGTACTGCCATCGGTCAGTACTGCACCGCCTAATGCCCATTCACAAGCGCGGCTTTCAGTGTTGCGGTCCCGtttgc                                                                                             >  2:184339/1‑147 (MQ=255)                                                       tttatttaCGATTATTTACCGACCTGGTGACCAATAACACCTCCGACAGCTGCACCACCTAATGTACCCAACGTACTGCCATCGGTCAGTACTGCACCGCCTAATGCCCCTGCACCCGCGCCGATTGCGGTGTTGCGGTCCCGTTTAGa                                                                                            <  2:703727/149‑1 (MQ=255)                                                          atttaCGATTATTTACCTACCTGGTGACCAATAACACTTCCGACAGCTGCACCACCTAATGTACCCAACGTACTGCCATCGGTCAGTACTGCACCGCCTAATGCCCCTGCACCCGCGCCGCTTGCGGTGTTGCGGTCCCGTTTAGACCa                                                                                         <  1:353692/149‑1 (MQ=255)                                                           tttaCGATTATTTACCGACCTGGTGACCAATAACACCTCCGACAGCTGCACCACCGAAGGTACCCAACGTACTGCCATCGGTCAGTACTGCACCGCCTAATGCCCCTGCACCCACGCCGATTGCGGTGTTCCGGTCCCGTTTAGACCAg                                                                                        >  1:30861/1‑149 (MQ=255)                                                           tttaCGATTATTTACCGACCTGGTGACCAATAACACCTACGACAGCTGCACCACCTAATGTACCCAACGTACTGCCATCGGTCAGTGATAAGGCACCGAAATCCCCTGCACCCACGCCGATTGCGGTGTTGCGGTCCCGTTTAGACCAg                                                                                        >  1:429744/1‑149 (MQ=255)                                                            tcaCGATTATTTACCGACCTGGTGACCAATAACACCTCCGACAGCTGCACCACCTAATGTACCCAACCTACTGCCCTCGGTCAGTACTGCACCGCCTAATGCCCCTGCACCCGCGCCGATTGCGGTGTTGCGGTCCCGTTTAGACCAGt                                                                                       <  2:523188/147‑1 (MQ=255)                                                                gATTATTTACCGACCTGGTGACCAATAACACCTCCGACAGCTGCACCACCTAATGTACCCAACGTACTGCCATCGGTCAGTACTGCACCGCCTAATGCCCCTGCACCCGCGCCGATTGCGGTGTTGCGGTCCCGTTTAGACCAGTTAGa                                                                                   >  2:711884/1‑149 (MQ=255)                                                                             ccTGGTGACCAAAAGCACTGCCGACAGCTGCACCACCTAATGTACCCAACGTACTGCCATCGGTCAGTACTGCACCGCCTAATGCCCCTGCACCCGCGCCGATTGCGGTGTTGCGGTCCCGTTTAGACAAGTTAGAACAGGCACTCaga                                                                      <  2:713415/149‑1 (MQ=255)                                                                               tGGTGACCAATAACACCTCCGACAGCTGCACCACCTAATGTACCCAACGTACTGCCATCGGTCAGTACTGCACCGCCTAATGCCCCTGCACCCGCGCCGATTGCGGTGTTGCGGTCCCGTTTAGACCAGTTAGAACAGGCACTCAgaga                                                                    <  2:779776/149‑1 (MQ=255)                                                                                   gACCAATAACACCTCCGACAGCTGCACCACCTAATGTACCCAACGTACTGCCATCGGTCAGTACTGCACCGCCTAATGCCCCTGCACCCGCGCCGATTGCGGTGTTGCGGTCGCGTTTAGACCAGTTAGTACAGCCACCCAgagaactt                                                                >  2:401616/1‑145 (MQ=255)                                                                                     ccAATAACACCTCCGACAGCTGCACCACCTAATGTACCCAACGTACTGCCATCGGTCAGTACTGCACCGCCTAATGCCCCTGCACCCGCGCCGATTGCGGTGTTGCGGTCCCGTTTAGACCAGTTACAACAGGCACACAGAGACATTGc                                                              >  1:609277/1‑149 (MQ=255)                                                                                      cAATAACACCTCCGGCAGCTGCACCACCTAATGTACCCAACGTATTGCCATCGGTCAGTACTGCACCGCCTAATGCCCCTGCACCCGCGCCGATTGCGGTGTTGCGGTCCCGTTTAGACCAGTTAGAACAGGCACTCAGAGACATTGcc                                                             <  1:71624/149‑1 (MQ=255)                                                                                       aaTAACACCTCCGACAGCTGCACCACCTAATGTACCCAACGTACTGCCATCGGTCAGTACTGCACCGCCTAATGCCCCTGCACCCGCGCCGATTGAGGTGTTGCGGTCCCGTTTAGACCAGTTAGAACAAGCACTCAGAGACATTGCCa                                                            >  1:569325/1‑149 (MQ=255)                                                                                        aTAACACCTCCGACAGCTGCACCACCTAATGTACCCAACGTACTGCCATCGGTCAGTACTGCACCGCCTAATGCCCCTGCACCCGCGCCGATTGCGGTGTTGCGGTCCCGTTTAGACCAGTTAGAACAGGCACCCAGAGACATAGccca                                                           >  2:342081/1‑147 (MQ=255)                                                                                         tAACACCTCCGACAGCTGCACCACCTAATGTACCCAACGTACTGCCATCGATCAGTACTGCACCGCCTACTGCCCCTGCACCCGCGCCGATTGCGGCGTAGCGGTCCCGGTTAGACCCGTTAGAACAGGCACTCAGAAACATTGCCaaa                                                          >  2:271797/1‑149 (MQ=255)                                                                                               cTCCGACAGCTGCACCACCTAATGTACCCAACGTACTGCCATCGGTCAGTACTGCACCGCCTAATGCCCCTGCACCCGCGCCGATTGCGGTGTTGCGGTCCCGTTTAGACCAGTTAGAACAGGCACTCAGAGACATTGCCAAAGAAAtt                                                    >  1:765281/1‑149 (MQ=255)                                                                                                tCCGACAGCTGCACCACCTAATGTACCCAACGTACTGCCATCGGTCAGTACTGCACCGCCTAATGCCCCTGCACCCGCGCCGATTGCGGTGTTGCGGTCCCGATTAAACCAGTTAGAACAGGCACTCAGAGACATTGCCAAAGTAATTg                                                   >  1:567075/1‑149 (MQ=255)                                                                                                        cTGCACCACCTAATGTACCCAACGTACTGCCATCGGTCAGTACTttgggtacattaggtggtgcagctgtcggaggtgttattggtcaccaggtcggtaaataatcgtaaataaatgtcgattatcgactcgcaa                                                         <  2:796804‑M2/135‑92 (MQ=255)                                                                                                        cTGCACCACCTAATGTACCCAACGTACTGCCATCGGTCAGTACTttgggtacattaggtggtgcagctgtcggaggtgttattggtcaccaggtcggtaaataatcgtaaataaatgtcgattatcgactcgcaa                                                         >  1:796804‑M2/1‑44 (MQ=255)                                                                                                                 cTAATGTACCCAACGTACTGCCATCGGTCAGTACTGCACCGCCTAATGCCCCTGCACCCGCGCCGATTGCGGTGTTGCGGTCCCGTTTAGACCGGTTAGAACAGGCACTCAGAGACATTGCCAAAGTAATTGCCAGAACAGCCGCGGTc                                  >  2:545810/1‑149 (MQ=255)                                                                                                                  tAATGTACCCAACGTACTGCCATCGGTCAGTACTGCACCGCCTAATGCCCCTGCACCCGCGCCGATTGCGGTGTTGCGGTCCCTTTTAGACCAGTTAGAACAGGCACTCAGAGACGTTGCCAAAGTAATTGCCAGAACACCCGCCGTCa                                 >  2:166575/1‑149 (MQ=255)                                                                                                                  tAATGTACCCAACGTACTGCCATCGGTCAGTACTGCACCGCCTAATGCCCCTGCACCCGCGCCGATTGCGGTGTTGCGGTCCCGTTTAGACCAGTTAGAACAGGCACTCAGAGACATTGCCAAAGTAATTGCCAGAACAGCCGCGGTCa                                 >  1:42256/1‑149 (MQ=255)                                                                                                                  tAATGTACCCAACGTACTGCCATCGGTCAGTACTGCACCGCCTAATGCCCCTGCACCCGCGCCGATTGCCGTGTTGCGGTCCCGTTTAGACCAGTTAGAACAGGCACTCAGAGACATTGCCAAAGTAATTGCCAGAACAGCCGCGGTCa                                 >  1:683461/1‑149 (MQ=255)                                                                                                                     tGTACCCAACGTACTGCCATCGGTCAGTACTGCACCGCCTAATGCCCCTGCACCCGCGCCGATTGCGGTGTTGCGGTCCCGTTTAGACCAGTTAGAACAGGCACTCAGAGACATTGCCAAAGTAATTGCCAGAACAGCCGCGGTCAttt                              >  1:539463/1‑149 (MQ=255)                                                                                                                     tGTACCCAACGTACTGCCATCGGTCAGTACTGCACCGCCTAATGCCCCTGCACCCGCGCCGATTGCGGTGTTGCGGTCCCGTTTAGACCAGTTAAAACAGGCACTCAGAGACATTGCCAAAGTAATTGCCAGAACAACCGCGCTCAttt                              >  1:82276/1‑149 (MQ=255)                                                                                                                          ccAACGTACTGCCATCGGTCAGTACTGCACCGCCTAATGCCCCTGCACCCGCGCCGATTGCGGTGTTGCGGTCCCGTTTAGACCAGTTAGAACAGGCACTCAGAGACATTGCCAAAGTAATTACCAGAACAGCCGCGGTCATTTTTTTg                         >  1:512650/1‑149 (MQ=255)                                                                                                                           cAACGTACTGCCATCGGTCAGTACGttgggtacattaggtggtgcagctgtcggaggtgttattggtcaccaggtcggtaaataatcgtaaataaatatcgattatcgactcgcaattataatacgcttgattctgttaagtacgaaat                        <  2:314625‑M2/149‑125 (MQ=255)                                                                                                                                   tGCCATCGGTCAGTACTGCACCGCCTAATGCCCCTGCACCCGCGCCGATTGCGGTGTTGCGGTCCCGTTTAGACCAGTTAGAACAgg                                                                              >  2:388335/1‑87 (MQ=255)                                                                                                                                   tGCCATCGGTCAGTACTGCACCGCCTAATGCCCCTGCACCCGCGCCGATTGCGGTGTTGCGGTCCCGTTTAGACCAGTTAGAACAgg                                                                              <  1:388335/87‑1 (MQ=255)                                                                                                                                    gCCATCGGTCAGTACTGCACCGCCTAATGCCCCTGCACCCGCGCCGATTGCGGTGTTGCGGTCCCGTTTAGACCAGTTAGAACAGGCACTCAGAGACATTGCGAAAGTAATTGCCAGAACAGCCGCGGTCATTTTTTTGCTCGTTACaa               <  1:606010/149‑1 (MQ=255)                                                                                                                                       ctCGGTCAGTACTGCACCGCCTAATGCCCCTGCACCCGCGCCGATTGCGGTGTTACGGTCCAGTTTAGAACAGTTAGAACAGGCACTCACAAAACCTGCCAAAGTAATTGCCAGAACAGCCGCGGTCATTTTTTTGCTCGTTACTAAcc            <  2:681135/148‑2 (MQ=255)                                                                                                                                              aGTACTGCACCGCCTAATGCCCCTGCACCCGCGCCGATTGCGGTGTTGCGGTCCCGTTTAGACCAGTTAGAACAGGCACTCAGAGACATTGCCAAAGTAATTGCCAGAACAGCCGCGGTCATTTTTTTGCTCGTTACAAACATAATAct     <  2:747746/149‑1 (MQ=255)                                                                                                                                                 aCTGCACCGTCTAATGCCCCTGCACCCGCGCCGATTGCGGTGTTGCGGTCCCGTTTAGACCAGTTAGAACAGGCACTCAGAGACATTGCCAAAGTAATTGCCAGAACAGCCGCGGTCATTTTTTTGCTCGTTACAAACATAATActctc  <  2:287088/149‑1 (MQ=255)                                                                                                                                                   |                                                                                                                                                   TATTTCGTACTGAACAGAATCAAGCGTATTATAATTGCGAGTCGATAATCGACATTTATTTACGATTATTTACCGACCTGGTGACCAATAACACCTCCGACAGCTGCACCACCTAATGTACCCAACGTACTGCCATCGGTCAGTACTGCACCGCCTAATGCCCCTGCACCCGCGCCGATTGCGGTGTTGCGGTCCCGTTTAGACCAGTTAGAACAGGCACTCAGAGACATTGCCAAAGTAATTGCCAGAACAGCCGCGGTCATTTTTTTGCTCGTTACAAACATAATACTCTC  >  NC_000913_3_bme_pgi/1343045‑1343337

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.