| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913_3_bme_pgi | = 3828619 | 29 (0.620) | 3 (0.070) | 3/260 | NT | 9.6% | coding (47/1206 nt) | gltS | glutamate transporter |
| ? | NC_000913_3_bme_pgi | = 3828623 | 29 (0.650) | coding (43/1206 nt) | gltS | glutamate transporter | |||||
ATCAAAGTTGACTTCCCAGCCCATGCTTTTTTTCAGTACTAGTAGCGCCAGCGCCACCAACAAACCACCCGCAACAGGTTCCGGTATGGTGTATTTCTTCAAAAAGGAGACGGAATGGACCAACTTACG‑CCCGAGCAGCAACGTCAGCGTTGCGGCAACAAGCGTTGCTAAAGTATCGAGATGAAACATAGTTACTCCTTTGTATCCGCATCACTCTTTCATACTCGTCATACTTCATCGCGCAGTGGCAACTTCATGAACTATGACGGGTATCGAGTTATGCTTTCCTGG > NC_000913_3_bme_pgi/3828477‑3828767 | atCAAAGTTGACTTCCCAGCCCATGCTTTTTTTCAGTAGTAGTAGCGACAGCGCCACCAACAAACCACCCGCAACAGGTTCCGTTATGGTGTATTTCTTCAAAAAGGAGACGGAATGGACCAACTTACG‑CCCGATCAGCAACGTCAGcg < 2:19697‑M2/149‑3 (MQ=255) tCAAAGTTGACTTCCCAGCCCATTCTTTTTTTCAGTACTAGTAGCGCCAGCGCCACCAACAAACCCCCCGCAACAGGTTCCGGTATGGTGTATTTCTTCAAAAAGACGACGGAATGGACCAACTTACG‑CCAGAGCCGCAACATCACcgt < 2:16468‑M2/149‑4 (MQ=255) tCAAAGTTGACTTCCCAGCCCATGCTTTTTTTTAGTACTAGTAGCGCCAGCGCCACCAACAAACCACCCGCAACAGGTTCCGGTGTGGTGTATTTCTTCAAAAAGGAGACGGAATCGACCAACCTCCG‑CCCACGCAGCATCGTCTGcgt < 2:74415‑M2/149‑4 (MQ=255) tCAAAGTTGACTTCCCAGCCCATGCTTTTTTTCAGTACTAGTAGCGCCAGCGCCCCCACCAAACCACCCGCAACAGATTCCGGTATGGTGTATTTCTTCAAAAAGGAGACGGAATGCACCAACTAACG‑CCCGAGCACCACCGtaaccat > 1:725561/1‑143 (MQ=255) tCAAAGTTGACTTCCCAGCCCATGCTTTTTTTCAGTACTAGTAGCGCCAGCGCCACCAACAAACCACCCGCAACAGGTTCCGGTATGGTGTATTTCTTCAAAAAGGAGACGGAATGGACCAACTTACG‑CCCGAGCAGAAACGTCAGcgt < 1:612230‑M2/149‑4 (MQ=255) aGTTGACTTCCCAGCCCATGCTTTTTTTCAGTACTAGTAGCGCCAGCGCCACCAACAAACCACCCGCAACAGGTTCCGGTATGGTGTATTTCTTCAAAAAGGAGACGGAATGGACCTACTTACG‑CCCGAGCAGCAACGTCAGCGTTGCg < 2:535823/149‑1 (MQ=255) ttGACTTCCCAGCCCATGCTTTTTTTCAGTACTAGTAGCGCCAGCGCCACCAACAAACCACCCGCAACAGGTTCCGGTATGGTGTATTTCTTCAAAAAGGAGACGGAATGGACCAACTTACG‑CCCGAGCAGCAACGctgacgttgctgc < 1:358025‑M1/149‑14 (MQ=255) ttCCCAACCCATGCTTTTTTTCAGTACTAGTAGAGCCAGCACAACCAACAAACCACCCGCCACAGGTTCCGGTATGGTGCATTTCTTCAAAAAGGAGACTGAATGAACCAACTTACA‑CCCTGCCAGCAACGTCAACGTAGCAGcaacaa > 2:368616/1‑149 (MQ=255) tgccAGCCCATGCTTTTTTTCAGGACTAGGAGCGCCAGCGCCACCAACAAACCCCCCGCAACAGGTTCCGGTATGGTGTATTTCTTCAAAAAGGAGACGGAATGGACCAACTTACG‑CCCGAGCAGCAACGTCAGCGTTGCGGCAACAAg < 2:270818/147‑1 (MQ=255) tGCTTTTTTTCAGTACTAGTAGCGCCAGCGCCACCAACAAACCACCCGCAACAGGTTCCGGTATGGTGTATTTCTTCAAAAAGGAGACGGAATGGACCAACTTACG‑CCCGAGCAGCAACGTCAGCGTTGCGGCAACAAGCGTTGCTaaa < 2:594336/149‑1 (MQ=255) gcgccagcgccaCCAACAAACCACCCGCAACAGGTTCCGGTATGGTGTATTTCTTCAAAAAGGAGACGGAATGGACCAACTTACG‑CCCGAGCAGCAACGTCAGCGTTGCGGCAACAAGCGTTGCTAAAGTATCGAGATGAAACATAGtt > 1:761219/1‑149 (MQ=255) gccaCCAACAAACCACCCGCAACAGGTTCCGGTATGGTGTATTTCTTCAAAAAGGAGACGGAATGGACCAACTTACG‑CCCGAGCAGCAACGTCAGCGTTGCGGCAACAAGCGTTGCTAAAGTATCGAGATGAAACATAGTTACTCCttt < 2:748284/149‑1 (MQ=255) caccaACAAACCACCCACAAAAGGGTCCGGTAAGGTGTATTGCTTCAAAAAGGAGACGGAATGTACCAACTTACG‑CCCGAGCAGCAACGTCAGCCTTGCGGCAACAAGCGTTGCTAAAGTATCAACATGAACCATCGTTACTCCTTTGt > 2:288763/1‑149 (MQ=255) aacaaACCACCCGCAACAGGTTCCGGTATGGTGTATTTCTTCAAAAAGGAGACGGAATGGACCAACTTACG‑CCCGAGCAGCAACGTCAGCGTTGCGGCAACAAGCGTTGCTAAAGTATCGAGATGAAACATAGTTACTCCTTTGTATcc > 1:865628/1‑149 (MQ=255) caacactcccGCACCCGGTTCCGGTATGGTGTTTGTCTGTTAGACGCAACTTGAAGGGACCAACTTACG‑CCCGAGCAGCAACGTCAGCGTTGCGGCAACAAGCGTTGCTAAAGTATCGAGATGAAACATAGTTACTCCTTTGTATCCGc < 1:202552/142‑1 (MQ=255) ccaccCTGAACACGTTCCGGTATTGTGTATTTCTTAAAAAAGGAGACGGAATTGACCAACTTACG‑ACCGAGCAGCAACGTCAGCGTTGCGGCAACAAGCGTTGCTAAAGTATCGAGATGAAACATAGTTACTCCTTTGTATCCGCATCa < 1:176483/149‑1 (MQ=255) gCAACAGGTTCCGGTATGGTGTATTTCTTCAAAAAGGAGACGGAATGGACCAACTTACG‑CCCGATCAGCAACGTCAGCGTTGCGGCAACAAGCGTTGCTAAAGTATCGAGATGAAACATAGTTACTCCTTTGTATCCGCATCACTCttt > 1:252942/1‑149 (MQ=255) cAACAGGTTCCGGTATGGTGTATTTCTTCAAAAAGGAGACGGAATGGACCAACTTACG‑CCCGAGCAGCAACGctgacgttgctgctcggg > 2:201505‑M1/1‑72 (MQ=255) cAACAGGTTCCGGTATGGTGTATTTCTTCAAAAAGGAGACGGAATGGACCAACTTACG‑CCCGAGCAGCAACGctgacgttgctgctcggg < 1:201505‑M1/90‑19 (MQ=255) aCAGGTTCCGGTATGGTGTATTTCTTCAAAAAGGAGACGGAATGGACCAACTTACG‑CCCGAGCAGCAACGTCAGCGTTGCGGCAACAAGCGTTGCTAAAGTATCGAGATGAAACATAGTTACTCCTTTGTATCCGCATCACTCTTTCAt > 2:577963/1‑149 (MQ=255) gaTGGTGTATTTCTTCAAAAAGGAGACGGAATGGACCAACTTACG‑CCCGAGTAGCAACGTCAGCGTTGCGGCAACAAGCGTTGCTAAAGTATCGAGATGAAACATAGTTACTCCTTTGTATCCGCATCACTCTTTCATACTCGTCATAc < 1:275070/148‑1 (MQ=255) gtgtATTTCTTCAAAAAGGAGACGGAATGGACCAACTTACG‑CCCGAGCAGCAACGTCAGCGTTGCGGCAACAAGCGTTGCTAAAGTATCGAGATGAAACATAGTTACTCCTTTGTATCCGCATCACTCTTTCATACTCGTCATACTTCa > 1:690144/1‑149 (MQ=255) gtgtATTTCTTCAAAAAGGAGACGGAATGGACCAACTTACG‑CCCGAGCAGCAACGTCAGCGTTGCGGCAACAAGCGTTGCTAAAGTATCGAGATGAAACATAGTTAATCCTTTGTATCAGCATAACTCTTTCATAATCGTCATACTTCa > 1:90832/1‑149 (MQ=255) tgtATTTCTTCAAAAAGGAGACGAAATGGACCAACTTACG‑CCCGAGTAGCAACGTCAGCGTTGCGGCAACAAGCGTTGCTAAAGTATCGAGATGAAACATAGTTACTCCTTTGTATCCTCATCACTCTTTCATACTCGTCATACTTCAt < 2:34270/149‑1 (MQ=255) tttCTTCAAAAAGGAGACGGAATGGACCAACTTACG‑CCCGAGCAGCAACGTCAGCGTTGCGGCAACAAGCGTTGCTAAAGTATCGAGATGAAACATAGTTACACCTTTGTAACCGCATCACTCTTTCATACTCGTCATACTTCATcgcg > 1:392362/1‑149 (MQ=255) ttcAAAAAGGAGACGGAATGGACCAACTTACG‑CCCGAGCAGCAACGTCAGCGTTGCGGCAACAAGCGTTGCTAAAGTATCGAGATGAAACATAGTTACTCCTTTGTATCCGCATCACTCTTTCATACTCGTCATACTTCATCGCGCAGt < 1:74415/149‑1 (MQ=255) ttcAAAAAGGAGACGGAATGGACCAACTTACG‑CCCGAGCAGCAACGTCAGCGTTGCGGCAACAAGCGTTGCTAAAGTATCGAGATGAAACATAGTTACTCCTTTGTATCCGCATCACTCTTTCATACTCGTCATACTTCATCGAGCAGt > 1:661449/1‑149 (MQ=255) aaaaaGGAGACGGAATGGACCAACTTACG‑CCCGAGCAGCAACGTCAGCGTTGCGGCCACAAGCGTTGCTAAAGTATCGAGATGAAACATAGTTACTCCTTTGTATCCGCATCACTCTTCGATACTCGTCCTACTTCATCGCGCAGTGGc > 2:207142/1‑149 (MQ=255) aaaaaGGAGACGGAATGGACCAACTTACG‑CCCGAGCAGCAACGTCAGCGTTGCGGCAACAAGCGTTGCTAAAGTATCGAGATGAAACATAGTTACTCCTTTGTATCCGCATCACTCTTTCATACTCGTCATACTTCATCGCGCAGTGGc > 1:255929/1‑149 (MQ=255) tatggAATGTACCAAC‑CACGCCCCCAGCAGCACCGGCAGCCTTGCTGCAAACAGCGTTGCTAACGTATCCACATCAAACATTGTTCCTCTTTTGTATCCGCATCCTTCTTTCATACTCGTCATACTTCATCGCGCAGTGGCAACTTCAt < 2:509648/146‑1 (MQ=255) gaCGGAATGGACCAACTTACG‑CCCGAGCAGCAACGTCAGCGTTGCGGCAACAAGCGTTGCTAAAGTATCGAGATGAAACATAGTTACTCCTTTGTATCCGCATCACTCTTTCATACTCGTCATACTTCATCGCGCAGTGGCAACTTCAt < 1:730692/149‑1 (MQ=255) gACCAACTTACG‑CCCGAGCAGCAACGTCAGCGTTGCGGCAACAAGCGTTGCTAAAGTATCGAGATGAAACATAGTTACTCCTTTGTATCCGCATCACTCTTTCATACTCGTCATACTTCATCGCGCAGTGGCAACTCCATGAACTATGa < 2:646968/149‑1 (MQ=255) gACCAACGTACG‑CCCGAGCAGCAACGTCAGCGTTGCGGCAACAAGCGTTGCTAAAGTATCGAGATGAAACATAGTTACTCCTTTGTATCCGCATTACTCTTTCATACTCGTCATACTTCATCGCGCAGTGGCATCTTCATGAACTATGa < 2:283877/149‑1 (MQ=255) atcAACTTACG‑TCCGAGTAGTAACTTCATCGTTTTGGCAATAAGCGTTGCTAAAGTATCGAGATGAAACATAGTTCCTCCTTTGTATCCGCATCACTCTTTCATACTCGTCATACTTCATCGCGCAGTGGCAACTTCATGAACTATGAc < 1:335636/147‑1 (MQ=255) cAACTTACG‑CCCGAGCAGCAACGTCAGCGATGTCGTTATTTTCGTTGCTAAAGTATCGAGATGAAACATAGTTACTCCTTTGTATCCGCATCACTCTTTCATACTCGTCATACTTCATCGCGCAGTGGCAACTTCATGGACTATGAccg > 2:869135/1‑147 (MQ=255) cTTACG‑CCCGAGCAGCAACGTCAGCGTTGCGGCAACAAGCGTTGCTAAAGTATCGAGATGAAACATAGTTACTCCTTTGTATCCGCATCACTCTTTCATACTCGTCATACTTCATCGCGCAGTGGCAACTTCATGAACTATGACGGGTa > 1:75820/1‑149 (MQ=255) ttACG‑GCCTAGCAGCAACGACAGCTAAGCGGCAACAAGCGTTGCTAAAGTAACGAGAAGAAACATTGTTACTCCTTTGTATCTGCAGCATTCTTTCATACTCGTCATACATCGTCGCGCAGTGGCAACTTCATGAACTATGACGGGTAt < 2:526833/149‑1 (MQ=255) cccGAGCAGCAACGTCAGcgttgctgctcgggcgtaagttggtccattccgtctcctttttgaagaaatacaccataccggaacctgttg > 2:201505‑M2/1‑18 (MQ=255) cccGAGCAGCAACGTCAGcgttgctgctcgggcgtaagttggtccattccgtctcctttttgaagaaatacaccataccggaacctgttg < 1:201505‑M2/90‑73 (MQ=255) gcagcaACGTCAGcgttgctgctcgggcgtaagttggtccattccgtctcctttttgaagaaatacaccataccggaacctgttgcgggtggtttgttggtggcgctggcgctactagtactgaaaaaaagcatgggctgggaagtcaa < 1:358025‑M2/149‑137 (MQ=255) aCGgtgatgttgcggctctggcgtaagttggtccattccgtcgtctttttgaagaaatacaccataccggaacctgttgcggggggtttgttggtggcgctggcgctactagtactgaaaaaaagaatgggctgggaagtcaactttga < 2:16468‑M1/149‑147 (MQ=255) aCGctgacgtttctgctcgggcgtaagttggtccattccgtctcctttttgaagaaatacaccataccggaacctgttgcgggtggtttgttggtggcgctggcgctactagtactgaaaaaaagcatgggctgggaagtcaactttga < 1:612230‑M1/149‑147 (MQ=255) aCGcagacgatgctgcgtgggcggaggttggtcgattccgtctcctttttgaagaaatacaccacaccggaacctgttgcgggtggtttgttggtggcgctggcgctactagtactaaaaaaaagcatgggctgggaagtcaactttga < 2:74415‑M1/149‑147 (MQ=255) aCGTCAGCGTTGCGGCAACAAGCGTTGCTAAAGTATCGAGATGAAACATAGTTACTCCTTTGTATCCGCATCACTCTTTCATACTCGTCATACTTCATCGCGCAGTGGCAACTTCATGAACTATGACGGGTATCGAGTTATGCTTTCCt < 2:46245/149‑1 (MQ=255) cGctgacgttgctgatcgggcgtaagttggtccattccgtctcctttttgaagaaatacaccataacggaacctgttgcgggtggtttgttggtggcgctgtcgctactactactgaaaaaaagcatgggctgggaagtcaactttgat < 2:19697‑M1/149‑148 (MQ=255) gTCAGCGTTGCGGCAACAAGCGTTGCTAAAGTATCGAGATGAAACATAGTTACTCCTTTGTATCCGCATCACTCTTTCATACTCGTCATACTTCATCGCGCAGTGGCAACTTCATGAACTATGa < 2:5370/124‑1 (MQ=255) gTCAGCGTTGCGGCAACAAGCGTTGCTAAAGTATCGAGATGAAACATAGTTACTCCTTTGTATCCGCATCACTCTTTCATACTCGTCATACTTCATCGCGCAGTGGCAACTTCATGAACTATGa > 1:5370/1‑124 (MQ=255) gTCAGCGTTGCGGCAACAAGCGTTGCTAAAGTATCGAGATGAAACATAGTTACTCCTTTGTATCCGCATCACTCTTTCATACGCGTCATACTTCATCGCGCAGTGGCAACTTCATGAACTATGACGGGTATCGAGTTATGCTTTCCTgg < 2:612230/149‑1 (MQ=255) | ATCAAAGTTGACTTCCCAGCCCATGCTTTTTTTCAGTACTAGTAGCGCCAGCGCCACCAACAAACCACCCGCAACAGGTTCCGGTATGGTGTATTTCTTCAAAAAGGAGACGGAATGGACCAACTTACG‑CCCGAGCAGCAACGTCAGCGTTGCGGCAACAAGCGTTGCTAAAGTATCGAGATGAAACATAGTTACTCCTTTGTATCCGCATCACTCTTTCATACTCGTCATACTTCATCGCGCAGTGGCAACTTCATGAACTATGACGGGTATCGAGTTATGCTTTCCTGG > NC_000913_3_bme_pgi/3828477‑3828767 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |