New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913_3_bme_pgi = 382861929 (0.620)3 (0.070) 3/260 NT 9.6% coding (47/1206 nt) gltS glutamate transporter
?NC_000913_3_bme_pgi = 3828623 29 (0.650)coding (43/1206 nt) gltS glutamate transporter

ATCAAAGTTGACTTCCCAGCCCATGCTTTTTTTCAGTACTAGTAGCGCCAGCGCCACCAACAAACCACCCGCAACAGGTTCCGGTATGGTGTATTTCTTCAAAAAGGAGACGGAATGGACCAACTTACGCCCGAGCAGCAACGTCAGCGTTGCGGCAACAAGCGTTGCTAAAGTATCGAGATGAAACATAGTTACTCCTTTGTATCCGCATCACTCTTTCATACTCGTCATACTTCATCGCGCAGTGGCAACTTCATGAACTATGACGGGTATCGAGTTATGCTTTCCTGG  >  NC_000913_3_bme_pgi/3828477‑3828767
                                                                                                                                                   |                                                                                                                                                
atCAAAGTTGACTTCCCAGCCCATGCTTTTTTTCAGTAGTAGTAGCGACAGCGCCACCAACAAACCACCCGCAACAGGTTCCGTTATGGTGTATTTCTTCAAAAAGGAGACGGAATGGACCAACTTACGCCCGATCAGCAACGTCAGcg                                                                                                                                                <  2:19697‑M2/149‑3 (MQ=255)
 tCAAAGTTGACTTCCCAGCCCATTCTTTTTTTCAGTACTAGTAGCGCCAGCGCCACCAACAAACCCCCCGCAACAGGTTCCGGTATGGTGTATTTCTTCAAAAAGACGACGGAATGGACCAACTTACGCCAGAGCCGCAACATCACcgt                                                                                                                                               <  2:16468‑M2/149‑4 (MQ=255)
 tCAAAGTTGACTTCCCAGCCCATGCTTTTTTTTAGTACTAGTAGCGCCAGCGCCACCAACAAACCACCCGCAACAGGTTCCGGTGTGGTGTATTTCTTCAAAAAGGAGACGGAATCGACCAACCTCCGCCCACGCAGCATCGTCTGcgt                                                                                                                                               <  2:74415‑M2/149‑4 (MQ=255)
 tCAAAGTTGACTTCCCAGCCCATGCTTTTTTTCAGTACTAGTAGCGCCAGCGCCACCAACAAACCACCCGCAACAGGTTCCGGTATGGTGTATTTCTTCAAAAAGGAGACGGAATGGACCAACTTACGCCCGAGCAGAAACGTCAGcgt                                                                                                                                               <  1:612230‑M2/149‑4 (MQ=255)
     aGTTGACTTCCCAGCCCATGCTTTTTTTCAGTACTAGTAGCGCCAGCGCCACCAACAAACCACCCGCAACAGGTTCCGGTATGGTGTATTTCTTCAAAAAGGAGACGGAATGGACCTACTTACGCCCGAGCAGCAACGTCAGCGTTGCg                                                                                                                                           <  2:535823/149‑1 (MQ=255)
            ttCCCAACCCATGCTTTTTTTCAGTACTAGTAGAGCCAGCACAACCAACAAACCACCCGCCACAGGTTCCGGTATGGTGCATTTCTTCAAAAAGGAGACTGAATGAACCAACTTACACCCTGCCAGCAACGTCAACGTAGCAGcaacaa                                                                                                                                    >  2:368616/1‑149 (MQ=255)
             tgccAGCCCATGCTTTTTTTCAGGACTAGGAGCGCCAGCGCCACCAACAAACCCCCCGCAACAGGTTCCGGTATGGTGTATTTCTTCAAAAAGGAGACGGAATGGACCAACTTACGCCCGAGCAGCAACGTCAGCGTTGCGGCAACAAg                                                                                                                                   <  2:270818/147‑1 (MQ=255)
                       tGCTTTTTTTCAGTACTAGTAGCGCCAGCGCCACCAACAAACCACCCGCAACAGGTTCCGGTATGGTGTATTTCTTCAAAAAGGAGACGGAATGGACCAACTTACGCCCGAGCAGCAACGTCAGCGTTGCGGCAACAAGCGTTGCTaaa                                                                                                                         <  2:594336/149‑1 (MQ=255)
                                            gcgccagcgccaCCAACAAACCACCCGCAACAGGTTCCGGTATGGTGTATTTCTTCAAAAAGGAGACGGAATGGACCAACTTACGCCCGAGCAGCAACGTCAGCGTTGCGGCAACAAGCGTTGCTAAAGTATCGAGATGAAACATAGtt                                                                                                    >  1:761219/1‑149 (MQ=255)
                                                    gccaCCAACAAACCACCCGCAACAGGTTCCGGTATGGTGTATTTCTTCAAAAAGGAGACGGAATGGACCAACTTACGCCCGAGCAGCAACGTCAGCGTTGCGGCAACAAGCGTTGCTAAAGTATCGAGATGAAACATAGTTACTCCttt                                                                                            <  2:748284/149‑1 (MQ=255)
                                                      caccaACAAACCACCCACAAAAGGGTCCGGTAAGGTGTATTGCTTCAAAAAGGAGACGGAATGTACCAACTTACGCCCGAGCAGCAACGTCAGCCTTGCGGCAACAAGCGTTGCTAAAGTATCAACATGAACCATCGTTACTCCTTTGt                                                                                          >  2:288763/1‑149 (MQ=255)
                                                          aacaaACCACCCGCAACAGGTTCCGGTATGGTGTATTTCTTCAAAAAGGAGACGGAATGGACCAACTTACGCCCGAGCAGCAACGTCAGCGTTGCGGCAACAAGCGTTGCTAAAGTATCGAGATGAAACATAGTTACTCCTTTGTATcc                                                                                      >  1:865628/1‑149 (MQ=255)
                                                            caacactcccGCACCCGGTTCCGGTATGGTGTTTGTCTGTTAGACGCAACTTGAAGGGACCAACTTACGCCCGAGCAGCAACGTCAGCGTTGCGGCAACAAGCGTTGCTAAAGTATCGAGATGAAACATAGTTACTCCTTTGTATCCGc                                                                                    <  1:202552/142‑1 (MQ=255)
                                                                ccaccCTGAACACGTTCCGGTATTGTGTATTTCTTAAAAAAGGAGACGGAATTGACCAACTTACGACCGAGCAGCAACGTCAGCGTTGCGGCAACAAGCGTTGCTAAAGTATCGAGATGAAACATAGTTACTCCTTTGTATCCGCATCa                                                                                <  1:176483/149‑1 (MQ=255)
                                                                      gCAACAGGTTCCGGTATGGTGTATTTCTTCAAAAAGGAGACGGAATGGACCAACTTACGCCCGATCAGCAACGTCAGCGTTGCGGCAACAAGCGTTGCTAAAGTATCGAGATGAAACATAGTTACTCCTTTGTATCCGCATCACTCttt                                                                          >  1:252942/1‑149 (MQ=255)
                                                                         aCAGGTTCCGGTATGGTGTATTTCTTCAAAAAGGAGACGGAATGGACCAACTTACGCCCGAGCAGCAACGTCAGCGTTGCGGCAACAAGCGTTGCTAAAGTATCGAGATGAAACATAGTTACTCCTTTGTATCCGCATCACTCTTTCAt                                                                       >  2:577963/1‑149 (MQ=255)
                                                                                    gaTGGTGTATTTCTTCAAAAAGGAGACGGAATGGACCAACTTACGCCCGAGTAGCAACGTCAGCGTTGCGGCAACAAGCGTTGCTAAAGTATCGAGATGAAACATAGTTACTCCTTTGTATCCGCATCACTCTTTCATACTCGTCATAc                                                            <  1:275070/148‑1 (MQ=255)
                                                                                        gtgtATTTCTTCAAAAAGGAGACGGAATGGACCAACTTACGCCCGAGCAGCAACGTCAGCGTTGCGGCAACAAGCGTTGCTAAAGTATCGAGATGAAACATAGTTACTCCTTTGTATCCGCATCACTCTTTCATACTCGTCATACTTCa                                                        >  1:690144/1‑149 (MQ=255)
                                                                                        gtgtATTTCTTCAAAAAGGAGACGGAATGGACCAACTTACGCCCGAGCAGCAACGTCAGCGTTGCGGCAACAAGCGTTGCTAAAGTATCGAGATGAAACATAGTTAATCCTTTGTATCAGCATAACTCTTTCATAATCGTCATACTTCa                                                        >  1:90832/1‑149 (MQ=255)
                                                                                         tgtATTTCTTCAAAAAGGAGACGAAATGGACCAACTTACGCCCGAGTAGCAACGTCAGCGTTGCGGCAACAAGCGTTGCTAAAGTATCGAGATGAAACATAGTTACTCCTTTGTATCCTCATCACTCTTTCATACTCGTCATACTTCAt                                                       <  2:34270/149‑1 (MQ=255)
                                                                                             tttCTTCAAAAAGGAGACGGAATGGACCAACTTACGCCCGAGCAGCAACGTCAGCGTTGCGGCAACAAGCGTTGCTAAAGTATCGAGATGAAACATAGTTACACCTTTGTAACCGCATCACTCTTTCATACTCGTCATACTTCATcgcg                                                   >  1:392362/1‑149 (MQ=255)
                                                                                                 ttcAAAAAGGAGACGGAATGGACCAACTTACGCCCGAGCAGCAACGTCAGCGTTGCGGCAACAAGCGTTGCTAAAGTATCGAGATGAAACATAGTTACTCCTTTGTATCCGCATCACTCTTTCATACTCGTCATACTTCATCGCGCAGt                                               <  1:74415/149‑1 (MQ=255)
                                                                                                 ttcAAAAAGGAGACGGAATGGACCAACTTACGCCCGAGCAGCAACGTCAGCGTTGCGGCAACAAGCGTTGCTAAAGTATCGAGATGAAACATAGTTACTCCTTTGTATCCGCATCACTCTTTCATACTCGTCATACTTCATCGAGCAGt                                               >  1:661449/1‑149 (MQ=255)
                                                                                                    aaaaaGGAGACGGAATGGACCAACTTACGCCCGAGCAGCAACGTCAGCGTTGCGGCCACAAGCGTTGCTAAAGTATCGAGATGAAACATAGTTACTCCTTTGTATCCGCATCACTCTTCGATACTCGTCCTACTTCATCGCGCAGTGGc                                            >  2:207142/1‑149 (MQ=255)
                                                                                                    aaaaaGGAGACGGAATGGACCAACTTACGCCCGAGCAGCAACGTCAGCGTTGCGGCAACAAGCGTTGCTAAAGTATCGAGATGAAACATAGTTACTCCTTTGTATCCGCATCACTCTTTCATACTCGTCATACTTCATCGCGCAGTGGc                                            >  1:255929/1‑149 (MQ=255)
                                                                                                            tatggAATGTACCAACCACGCCCCCAGCAGCACCGGCAGCCTTGCTGCAAACAGCGTTGCTAACGTATCCACATCAAACATTGTTCCTCTTTTGTATCCGCATCCTTCTTTCATACTCGTCATACTTCATCGCGCAGTGGCAACTTCAt                                    <  2:509648/146‑1 (MQ=255)
                                                                                                            gaCGGAATGGACCAACTTACGCCCGAGCAGCAACGTCAGCGTTGCGGCAACAAGCGTTGCTAAAGTATCGAGATGAAACATAGTTACTCCTTTGTATCCGCATCACTCTTTCATACTCGTCATACTTCATCGCGCAGTGGCAACTTCAt                                    <  1:730692/149‑1 (MQ=255)
                                                                                                                     gACCAACTTACGCCCGAGCAGCAACGTCAGCGTTGCGGCAACAAGCGTTGCTAAAGTATCGAGATGAAACATAGTTACTCCTTTGTATCCGCATCACTCTTTCATACTCGTCATACTTCATCGCGCAGTGGCAACTCCATGAACTATGa                           <  2:646968/149‑1 (MQ=255)
                                                                                                                     gACCAACGTACGCCCGAGCAGCAACGTCAGCGTTGCGGCAACAAGCGTTGCTAAAGTATCGAGATGAAACATAGTTACTCCTTTGTATCCGCATTACTCTTTCATACTCGTCATACTTCATCGCGCAGTGGCATCTTCATGAACTATGa                           <  2:283877/149‑1 (MQ=255)
                                                                                                                      atcAACTTACGTCCGAGTAGTAACTTCATCGTTTTGGCAATAAGCGTTGCTAAAGTATCGAGATGAAACATAGTTCCTCCTTTGTATCCGCATCACTCTTTCATACTCGTCATACTTCATCGCGCAGTGGCAACTTCATGAACTATGAc                          <  1:335636/147‑1 (MQ=255)
                                                                                                                        cAACTTACGCCCGAGCAGCAACGTCAGCGATGTCGTTATTTTCGTTGCTAAAGTATCGAGATGAAACATAGTTACTCCTTTGTATCCGCATCACTCTTTCATACTCGTCATACTTCATCGCGCAGTGGCAACTTCATGGACTATGAccg                        >  2:869135/1‑147 (MQ=255)
                                                                                                                           cTTACGCCCGAGCAGCAACGTCAGCGTTGCGGCAACAAGCGTTGCTAAAGTATCGAGATGAAACATAGTTACTCCTTTGTATCCGCATCACTCTTTCATACTCGTCATACTTCATCGCGCAGTGGCAACTTCATGAACTATGACGGGTa                     >  1:75820/1‑149 (MQ=255)
                                                                                                                            ttACGGCCTAGCAGCAACGACAGCTAAGCGGCAACAAGCGTTGCTAAAGTAACGAGAAGAAACATTGTTACTCCTTTGTATCTGCAGCATTCTTTCATACTCGTCATACATCGTCGCGCAGTGGCAACTTCATGAACTATGACGGGTAt                    <  2:526833/149‑1 (MQ=255)
                                                                                                                                  cccGAGCAGCAACGTCAGcgttgctgctcgggcgtaagttggtccattccgtctcctttttgaagaaatacaccataccggaacctgttg                                                                          >  2:201505‑M2/1‑18 (MQ=255)
                                                                                                                                  cccGAGCAGCAACGTCAGcgttgctgctcgggcgtaagttggtccattccgtctcctttttgaagaaatacaccataccggaacctgttg                                                                          <  1:201505‑M2/90‑73 (MQ=255)
                                                                                                                                       gcagcaACGTCAGcgttgctgctcgggcgtaagttggtccattccgtctcctttttgaagaaatacaccataccggaacctgttgcgggtggtttgttggtggcgctggcgctactagtactgaaaaaaagcatgggctgggaagtcaa          <  1:358025‑M2/149‑137 (MQ=255)
                                                                                                                                             aCGTCAGCGTTGCGGCAACAAGCGTTGCTAAAGTATCGAGATGAAACATAGTTACTCCTTTGTATCCGCATCACTCTTTCATACTCGTCATACTTCATCGCGCAGTGGCAACTTCATGAACTATGACGGGTATCGAGTTATGCTTTCCt    <  2:46245/149‑1 (MQ=255)
                                                                                                                                               gTCAGCGTTGCGGCAACAAGCGTTGCTAAAGTATCGAGATGAAACATAGTTACTCCTTTGTATCCGCATCACTCTTTCATACTCGTCATACTTCATCGCGCAGTGGCAACTTCATGAACTATGa                           <  2:5370/124‑1 (MQ=255)
                                                                                                                                               gTCAGCGTTGCGGCAACAAGCGTTGCTAAAGTATCGAGATGAAACATAGTTACTCCTTTGTATCCGCATCACTCTTTCATACTCGTCATACTTCATCGCGCAGTGGCAACTTCATGAACTATGa                           >  1:5370/1‑124 (MQ=255)
                                                                                                                                               gTCAGCGTTGCGGCAACAAGCGTTGCTAAAGTATCGAGATGAAACATAGTTACTCCTTTGTATCCGCATCACTCTTTCATACGCGTCATACTTCATCGCGCAGTGGCAACTTCATGAACTATGACGGGTATCGAGTTATGCTTTCCTgg  <  2:612230/149‑1 (MQ=255)
                                                                                                                                                   |                                                                                                                                                
ATCAAAGTTGACTTCCCAGCCCATGCTTTTTTTCAGTACTAGTAGCGCCAGCGCCACCAACAAACCACCCGCAACAGGTTCCGGTATGGTGTATTTCTTCAAAAAGGAGACGGAATGGACCAACTTACGCCCGAGCAGCAACGTCAGCGTTGCGGCAACAAGCGTTGCTAAAGTATCGAGATGAAACATAGTTACTCCTTTGTATCCGCATCACTCTTTCATACTCGTCATACTTCATCGCGCAGTGGCAACTTCATGAACTATGACGGGTATCGAGTTATGCTTTCCTGG  >  NC_000913_3_bme_pgi/3828477‑3828767

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.