New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913_3_bme_pgi = 340241654 (1.160)3 (0.070) 3/260 NT 5.4% coding (917/1941 nt) csrD targeting factor for csrBC sRNA degradation
?NC_000913_3_bme_pgi = 3402431 54 (1.210)coding (902/1941 nt) csrD targeting factor for csrBC sRNA degradation

ACCAATGTGGATCATATCGTCGCGATCGAGCATTTTATTGTTCGGCAAGGTATCAACGGCTTTGATTAACTGACCGGCGATGCTCTCTGCCTCTTTTAACGTCCGGTGCGGTAACAGCGCAGCAAAATCACTGCGGTGGTAACGCGCCAGCAGTGCGCCAGGGTAGCGCATCATAAATGTCGACAGCAGATTCGTCAGAGTGAAGAACTGTTCTTCAACCTGGCTGTGCCCCCAGGTATCGCTCAACATATTGAAATCCGGCAGACGAATCATCATCACGATCCCGTGG  >  NC_000913_3_bme_pgi/3402283‑3402571
                                                                                                                                                    |                                                                                                                                            
aCCAATGTGGATCATATCGTCGCGATCGAGCATTTTATTGTTCGGCAAGGTGTCAACGGCTTTGATTAACTGATCGGCGATGCTCTCTGCCTCTTTTAACGTCCGGTGCGGTAACAGCGCAGCAAAATCACTGCGGTGTTAACACGCca                                                                                                                                              >  1:651460/1‑149 (MQ=255)
   aaTGTGGATCATATCGTCGCGATCGAGCATTTTATTGTTCGGCAAGGTATCAACGGCTTTGATTAACTGACAAACCAAGCTCTGTGTCGCTTTTAACGTCCGGTGCGGTAACAGCGCAGCAAAATCACTGCGGTGGTAACGCGCCAgca                                                                                                                                           <  2:546471‑M2/149‑4 (MQ=255)
    aTGTGCATCATAACGTCGCGATCGAGCATTTTTTTGTTCGGCAAGGTATCAACGGCTTTGATTAACTGACCGGCGATGCTATCTGCCGCTTTTAACGTCCGGTGCGGTAACAGCGCAGCAAAATCACTGCGGTGGTAACGCGCCAgcag                                                                                                                                          >  1:26692‑M2/1‑145 (MQ=255)
           tCATATCGTCGCGATCGAGCATTTTATTGTTCGGCAAGGTATCAACGGCTTTGATTAACTGACCGGCGATGCTCTCTGCCTCTTTTAACGTCCGGTGCGGTAACAGCGCAGCAAAATCACTGCGGTGGTAACGCGCCAGCAGTGCGCCa                                                                                                                                   >  1:359676/1‑149 (MQ=255)
             gtttggtcgCTATCGAGAATTTTATTGTTCGGCAAGGTATCAACGGCTTTGATTAACTGACCGGCGATGCTCTCTGCCTCTTTTAACGTCCGGTGCGGTAACAGCGCAGCAAAATCACTGCGGTGGTAACGCGCCAGCAGTGCGCCAgg                                                                                                                                 <  1:196293/144‑1 (MQ=255)
             atatCCTCGCGATCGAGCATTTTATTGTTCGGCAATGTATCAACGGCTTTGATTAACTGAGCGGCGATGCTCTCTGCCTCTACTAACGTCCGGTCCGGTAACAGCGCAGCAACATCACCGCTTTGGTAACGCGCCAGCAGTGCGCCAgg                                                                                                                                 <  2:889726/149‑1 (MQ=255)
              tatCGTCGCGATCGAGCATTTTATTGTTCGGCAAGGTATCAACGGCTTTGATTAACTGACCGGCGATGCTCTCTGCCTCTTTTAACGTCCGGTGCGGTAACAGCGCAGCAAAATCACTGCGGTGGTAACGCGCCAGCAGTGCGCCAggg                                                                                                                                >  2:389683/1‑149 (MQ=255)
              tatCGTCGCGATCGAGCATTTTATTGTTCGGCAAGGTATCAACGGCTTTGATTAACTGACCGGCGATGCTCTCTGCCTCTTTTAACGTCCGGTGCGGCAACAGCGCAGCAAAACCACTCCGCTGGTAACGCGCCACCCGTCCCCCAggg                                                                                                                                >  2:608842/1‑149 (MQ=255)
                   tcgCGATCGAGCATTTTATTGTTCGGCAAGGTATCAACGGCTTTGATTAACTGACCGGCGATGCTCTCTGCCTCTTTTAACGTCCGGTGCGGTAACAGCGCAGCAAAATCACTGCGGTGGTAACGCGGCAGCAGTGCGCCAGGGTAgcg                                                                                                                           >  1:83865/1‑149 (MQ=255)
                    cgcgATCGAGCATTTTATTGTTCGACAAGGTATCAACGGCTTTGATTAACTGACCGGCGATGCTCTCTGCCTCTTTTAACGTCCGGTGCGGTAACAGCGCAGCAAAATCACTGCGGTGGTAACGCGCCAGCAGTGCGCCAGGGTAgcgc                                                                                                                          >  2:8097/1‑149 (MQ=255)
                        atcttacATTTTATGGTCCGGCAAGGTATCAACGGCTTTGATTAACTGACCGTCGATCCTCTCTGCCTCTTTTAACGTCCGGTGCGGTAACAGCGCAGCAAAATCACTGCGGTGGTAACGCGCCAGCAGTGCGCCAGGGTAGCGcatca                                                                                                                      <  1:617024/143‑1 (MQ=255)
                            aGCATTTTATTGTTCGGCAAGGTATCAACGGCTTTGATTAACTGACCGGCGATGCTCTCTGCCTCTTTTAACGTCCGGTGCGGTAACAGCGCAGCAAAATCACTGCGGTGGTAACGCGCCAGCAGTGCGCCAGGGTAGCGCATCATaaa                                                                                                                  <  1:751065/149‑1 (MQ=255)
                            aGCATTTTATTGTTCGGCAAAGTATCAACGGCTTTGATTAACTGACCGGCGATGCTCTCTGCCTCTTTTAACGTCCGGTGCGGTAACAGCGCAGCAAAATCACTGCGGTGGTAACGCGCCAGCAGTGCGCCAGGGTAGCGCATCATaaa                                                                                                                  <  1:579743/149‑1 (MQ=255)
                             gCATTTTATTGTTCGGCAAGGGATCAACGGCTTGGATTAACTGACCGGCGATGCTCTCTGCCTCTTTTAACGTCCGGTGCGGTAACAGCGCAGCAAAATCACTGCGGTGGTAACGCGCCAGCAGTGCGCCAGGGTAGCGCATCATAAAt                                                                                                                 <  2:466481/149‑1 (MQ=255)
                               aTTTTATTGTTCGGCAAGGTATCAACGGCTTTGATTAACTGACCGGCGATGCTCTCTGCCTCTTTTAACGTCCGGTGCGGTAACAGCGCAGCAAAATCACTGCGGTGGTAACGCGCCAGCAGTGCGCCAGGGTAGCGCATCATAAATGt                                                                                                               <  1:499471/149‑1 (MQ=255)
                                  ttctttttCGGCAATGTATCAACGGCTTTGCTTAACTGACCCGCTATGCTCTCTGCCTCTTTTAACGTCCGGTGCGGTAACAGCGCAGCAAAATCACTGCGGTGGTAACGCGCCAGCAGTGCGCCAGGGTAGCGCATCATAAATGTCGa                                                                                                            <  1:388058/143‑1 (MQ=255)
                                  ttATTGTTCGGCAAGGTATCAACGGCTTTGATTAACTGACCGGCGATGCTCTCTGCCTCTTTTAACGTCCGGTGCGGTAACAGCGCAGCAAAATCACTGCGGTGGTAACGCGCCAGCAGTGCGCCAGGGTAGCGCATCATAAATGTCGa                                                                                                            <  2:553847/149‑1 (MQ=255)
                                  ttACTGTTCGGCAAGTTATCAACGGCTTTGATTAACTGACCGGCGATGCTCTCTGTCTTTTTTAACGTCCGGTGCTGTAACAGCGCAGCAAAATCACTGCGGTGGTAACGCGCCAGCAGTGCGCCAGGGTAGCGCATCATAAATGTCGa                                                                                                            <  1:308199/149‑1 (MQ=255)
                                       gTTCGGCACGGTATCAACGTCTTTGATTAACTGACCGGCGATGCTCTCTGCCTCTTTTAACGTCCGGTGCGGTAACAGCGCAGCAAAATCACTGCGGTGGTAACGCGCCAGCAGTGCGCCAGGGTAGCGCATCATAAATGTCGAcagca                                                                                                       <  1:319975/149‑1 (MQ=255)
                                       gTTCGGCAAGGTATCAACGGCTTTGATTAACTGACCGGCGATGCTCTCTGCCTCTTTTAACGTCCGGTGCGGTAACAGCGCAGCAAAATTTCTGCGGTGGTAACGCGCCAGCAGTGCGCCAGGGTAGCGCATCATAAATGTCGAcagca                                                                                                       <  1:700743/149‑1 (MQ=255)
                                       gTTCGGCAAGGTATCAACGGCTTTGATTAACTGACCGGCGATGCTCTCTGCCTCTTTTAACGTCCGGTGCGGTAACAGCGCAGCAAAATCACTGCGGTGGTAACGCGCCAGCAGTGCGCCAGGGTAGCGCATCATAAATGTCGAcagca                                                                                                       <  1:389683/149‑1 (MQ=255)
                                         tCGGCAAGGTATCAACGGCTTTGATTAACTGACCGGCGATGCTCTCTGCCTCTTTTAACGTCCGGTGCGGTAACAGCGCAGCAAAATCACTGCGGTGGTAACGCGCCAGCAGTGCGCCAGGGTAGCGCATCATAAATGTCGACAGCAGa                                                                                                     <  1:727801/149‑1 (MQ=255)
                                         tCGGCAAGGTATCAACGGCTTTGATTAACTGACCGGCGATGCTCTCTGCCTCTTTTAACGTCCGGTGCGGTAACAGCGCAGCAAAATCACTGCGGTGGTAACGCGCCAGCAGTGCGCCAGGGTAGAGCATCATAAATGTCGACAGCAGa                                                                                                     >  1:88331/1‑149 (MQ=255)
                                            gCAAGGTATCAACGGCTTTGATTAACTGACCGGCGATGCTCTCTGCCTCTTTTAACGTCCGGTGCGGTAACAGCGCAGCAAAATCACTGCGGTGGTAACGCGCCAGCAGTGCGCCAGGGTAGCGCATCATAAATGTCGCCAGCAGATTc                                                                                                  >  1:536597/1‑149 (MQ=255)
                                             cAAGGTATCAACGGCTTTGATTAACTCACCGGCGATGCTCTCTGCCTCTTTTAACTTCCGGTGCGGTAACAGCGCACCAAAATCACTGCGGAGGTAACGCCCCAGCAGTACGCCAGGGAAGCCCATCATAAATGTACACCGCAGAATCg                                                                                                 >  2:734258/1‑149 (MQ=255)
                                                ggTATCAACGGCTTTGATTAACTGACCGGCGATGCTCTCTGCCTCTTTTAACGTCCGGTGCGGTAACAGCGCAGCAAAATCACTGCGGTGGTAACGCGCCAGCAGTGCGCCAGGGTAGCGCATCATAAATGTCGACAGCAGATTCGTCa                                                                                              <  1:892852/149‑1 (MQ=255)
                                                  taacAACGGCTATGATTAACAGACCGGCGATGCTCTCGGCCCCTTTTAACGTCCGGTGCGGTAACAGCGCAGCAAAATCACTGCGGTTGTAACCCTCCAGCAGTGCGCCAGGGTAGCGCATCATAAATGTCGACAGCAGATTCGTCaga                                                                                            <  2:497159/146‑1 (MQ=255)
                                                  tATCAACGTCTTTGATTAACTGACCGGCGATGCTCTCTGCCTCTTTTAACGTCCGGTGCGGTAACAGCGCAGCAAAATCACTGCGGTGGTAACGCGCCAGCAGTGCGCCAGGGTAGCGCATCATAAATGTCGACAGCAGATTCGTCaga                                                                                            <  1:3997/149‑1 (MQ=255)
                                                  tATCAACGGCTTTGATTAACTGACTGGCGATGCTCTCTGCCTCTTTTAACGTCCGGTGCGGTAACAGCGCAGCAAAATCACTGCGGTGGTAACGCGCCAGCAGTGCGCCAGGGTAGCGCATCATAAATGTCGACAGCAGATTCGTCaga                                                                                            <  1:266155/149‑1 (MQ=255)
                                                  tATCAACGGCTTTGATTAACTGACCGGCGATGCTCTCTGCCTTTTTTAACGTCCGGTGCGGTAACAGCGCAGCAAAATCACTGCGGTGGTAACGCGCCAGCAGTGCGCCAGGGTAGCGCATCATAAATGTCGACAGCAGATTCGTCaga                                                                                            <  1:739814/149‑1 (MQ=255)
                                                    tCAACGGCTTTGATTAACTGACCGGCGATGCTCTCTGCCTCTTTTAACGTCCGGTGCGGTAACAGCGCAGCAAAATCACTGCGGTGGTAACGCGCCAGCAGTGCGCCAGGGTAGCGCATCATAAACGTCGACAGCAGATTCGTCAGAGt                                                                                          >  2:479164/1‑149 (MQ=255)
                                                    tCAACGGCTTTGATTAACTGACCGGCGATGCTCTCTGCCTCTTTTAACGTCCGGTGCGGTAACAGCGCAGCAAAATCACTGCGGTGATAACGCGCCAGCAGTGCGCCAGGGTAGCGCATCATAAATGTCGACAGCAGATTCGTCaaagg                                                                                          >  1:498680/1‑148 (MQ=255)
                                                    tCAACGGCTTTGATTAACTGACCGGCGATGCTCTCTGCCTCTTTTAACGTCCGGTGCAGTAACAGCGCAGCAAAATCACTGCGGGGGTAACGCGCCAGCAGTGCGCCAGGGTAGCGCATCATAAATGTCGACAGCAGAATCGTCAGAGt                                                                                          >  2:817673/1‑149 (MQ=255)
                                                      aaCGGCTTTGATTAACTGACCGGCGATGCTCTCTGCCTCTTTTAACGTCCGGTGCGGTAACAGCGCAGCAAAATCACTGCGGTGGTAACGCGCCAGCAGTGCGCCAGGGTAGCGCATCATAAATGTCGACAGCAGATTCGTCAGAGTga                                                                                        >  2:198958/1‑149 (MQ=255)
                                                      aaCGGCTTTGATTAACTGACCGGCGATGCTCTCTGACTCTTTTAACGTCCCGTGCGGTAACAGCGCAGCAAAATCACTGCGGTGTTAACGCGCCAGCAGAGCGCCAAGGTAACGCCTCATAGACGTCGACAGCAGCTTCGTCaccgggc                                                                                        >  2:588145/1‑143 (MQ=255)
                                                       aCGTCTTTGATTAACTGACCGGCGATGCTCTCTGCCTCTTTTAACGTCCGGTGCGGTAACAGCGCAGCAAAATCACTGCGGTGGTAACGCGCCAGCAGTGCGCCAGGGTAGCGCATCATAAATGTCGACAGCAGATTCGTCAGAGTgaa                                                                                       <  2:381206/149‑1 (MQ=255)
                                                               gATTAACTGACCGGCGATGCTCTCTGCCTCTTTTAACGTCCGGTGCGGTAACAGCGCAGCAAAATCACTGCGGTGGTAACGCGCCAGCAGTGCGCCAGGGTAGCGCATCATAAATGTCGACAGCAGATTCGTCAGAGTGAAGAACTGtt                                                                               >  1:897256/1‑149 (MQ=255)
                                                                 ttgaCTGACCGGCGATGCTCGCTGCCTCATTTAACGTCCGGTGCGGTAACAGCGCAGCAAAATCACTGCTGTGGTAACGCGCCAGCAGTGCGCCAGGGTAGCGCATCATAAATGTCGACAGCAGATCCGTCAGAGTGAAGAACTGttct                                                                             <  2:354230/146‑1 (MQ=255)
                                                                  tAACTGACGGGCGATGCTCTCTGCCTCGTTTAACGTCCGGTGCGGTAACAGCGCAGCAAAATCACTGCGGTGGTAACGCGCCAGCAGTGCGCCAGGGTAGCGCATCATAAATGTCGACAGCAGATTCGTCAGAGTGAAGAACTGttctt                                                                            <  2:70405/149‑1 (MQ=255)
                                                                           ggCGATGCTCTCTGCCTCTTTTAACGTCCGGTGCGGTAACAGCGCAGCAAAATCACTGCGGTGGTAACGCGCCGGCAGTGCGCCCGGGTAGCGCATCATAAATGTCGACAGCAGATTCGTCAGAGTGAAGAACTGTTCTTCAACCTGGc                                                                   >  2:273499/1‑149 (MQ=255)
                                                                                   tctctGCCTCTTTTAACGTCCGGTGCGGTAACAGCGCAGCAAAATCACTGCGGGGAAAAAGCGCCAAGAGTGCGCCAGGGTAGCGCATCCTAAAAGTCGAAAGCAGATTCGTCAGCGTGAAAAACTCTTATTCAAACTGGCTGTGcccc                                                           >  2:115200/1‑149 (MQ=255)
                                                                                      ccgCCTCTTTTAACGTCCGGTGCGGTAACCGCGCAGCAAAATCACTGCGGTGGTAACGCGCCAGCAGTGCGCCAGGGTAGCGCATCATAAATGTCGACAGCAGATTCGTCAGAGTGAAGAACTGTTCTTCAACCTGGCTGTGCCCCCAg                                                        <  1:346240/147‑1 (MQ=255)
                                                                                              tttATCGTTCGGTGCGGTAACAGCGAAGGAAAATCACTGCGGTGGTAACGGGCCAGCAGGGCGCCAGGGTAGCGCATCATAAATGTCGACAGCAGAGTCGTCAGAGTGAAGAACTGTTCTTCAACCTGGCTGTGCCCCCAGGTATCGCt                                                <  2:13063/149‑1 (MQ=255)
                                                                                              tttAACGTCCGGTGCGGTAACAGCGCAGCAAAATCACTGCGGTGGTAACGCTCCAGTAGGTCGCCAGGGTAGCGCATCATAAATGTCGACAGCAGATTCGTCAGAGTGAAGAACTGTTCTTCAACCTGGCTGTGCCCCCAGGTATCGCt                                                >  1:576601/1‑149 (MQ=255)
                                                                                              tttAACGTCCGGTGCGGTAACAGCGCAGCAAAATCACTGCGGTGGTAACGCGCCAGCAGTGCGCCAGGGTAGCGCATCATAAATGTCGACAGCAGATTCGTCAGAGTGAAGAACTGTTCTTCAACCTGGCTGTGCCCCCAGGTATCGCt                                                >  1:576611/1‑149 (MQ=255)
                                                                                                      cccgTGCGCTAACAGCGCAGCAAAATCACTGCGGTTGTAACGCGCCAGCAGTGCGCCAGGGTAGCGCATCATAAATGTCGACAGCAGATTCGTCAGAGTGAAGAACTGTTCTTCAACCTGGCTGTGCCCCCAGGTATCGCTCAACatat                                        <  2:73293/146‑1 (MQ=255)
                                                                                                      ccGGTGCGGTAACACCGCAGCAAAATCACTGCGGTGGTAACGCGCCAGCAGTGCGCCAGGGTAGCGCATCATAAATGTCGACAGCAGATTCGTCAGAGTGAAGAACTGTTCTTCAACCTGGCTGTGCCCCCAGGTATCGCTCAACatat                                        <  2:332544/149‑1 (MQ=255)
                                                                                                       cGGTGCGGTAATAGCGCAGCAAAATCTCTGCGGTGGTAACGCGCCAGCAGTGCGCCAGGGTAGCGCATCATAAATGTCGACAGCAGATTCGTCAGAGTGAAGAACTGTTCTTCAACCTGGCTGTGCCCCCAGGTATCGCTCAACATAtt                                       <  2:362275/149‑1 (MQ=255)
                                                                                                       cGGTGCGGTAACAGCGCAGCAAAATCACTGCGGTGGTAACGCGCCAGCAGTGCGCCAGGGTAGCGCATCATAAATGTCGACAGCAGATTCGTCAGAGTGAAGAACTGTTCTTCAACCTGGCTGTGCCCCCAGGTATCGCTCAACATAtt                                       <  1:490393/149‑1 (MQ=255)
                                                                                                              gTAACAGCGCAGCAAAATCAATGCGGTAGTAACGCGCgtgattttgctgcgctgttaccgcaccggacgttaaaagaggcagagagcatcgccggtcagttaatcaaagccgttgataccttgccgaacaataaaatgctcgatcgcg                                <  2:102938‑M2/149‑112 (MQ=255)
                                                                                                                   aGCGCAGCAAAATCACTGCGGTGGTAACGCGCCAGCAGTGCGCCAGGGTAGCGCATCATAAATGTCGCCAGCAGATTCGTCAGAGTGAAGAACTGTTCTTCAACCTGGCTGTGCCCCCAGGTATCGCTCAACATATTGAAATCCGGCAg                           >  1:690621/1‑149 (MQ=255)
                                                                                                                      gcagcaAAATCACTGCGGTGGTAACGCGCCAGCAGTGCGCCAGGGTAGCGCATCATAAATGTCGACAGCAGATTCGTCAGAGTGAAGAACTGTTCTTCAACCTGGCTGTGCCCCCAGGTATCGCTCAACATATTGAAATCCGGCAGACg                        >  1:112571/1‑149 (MQ=255)
                                                                                                                         gcaAAATCACTGCGGTGGTAACGCGCCAgcagtgattttgctgcgctgttaccgcaccggacgttaaaagaggcagagagcatcgccggtca                                                                              >  2:606417‑M2/1‑28 (MQ=255)
                                                                                                                         gcaAAATCACTGCGGTGGTAACGCGCCAgcagtgattttgctgcgctgttaccgcaccggacgttaaaagaggcagagagcatcgccggtca                                                                              <  1:606417‑M2/92‑65 (MQ=255)
                                                                                                                         acaAAAACACTGCGGTGGTAACGCGCCAACAGAGCGCCAGGGGAGCACATCATAAATGTCGACAGCAGATTCGTCAGATTGAAGAACTGTTCTACAACCTAGCTGTCCCCCCAAGTATCGCTCAACATATTGAAAACCCGCAGACGAat                     <  2:83865/148‑1 (MQ=255)
                                                                                                                          aaaaaGCACTGCGGTGGTAACGCGCCAGCAGTGCGCCACGGTAGCGCATCATAAATGTCGACAGCAGATTCGTCAGAGTGAAGAACTGTTCTTCAACCTGGATGTGCACAAAGGTATCGATCACCATATTGAAATCCGGCAGACGAatc                    <  2:212511/148‑1 (MQ=255)
                                                                                                                            aaaTCACTGCGGTGGTAACGCGCCAGCAGTGCGCCAGGGTAGCGCATCATAAATGTCGACAGCAGATTCGTCAGAGTGAAGAACTGTTCTTCAACCTGGCTGTGCCCCCAGGTATCGCTCAACATATTGAAATCCGGCAGACGAatcat                  >  1:470612/1‑149 (MQ=255)
                                                                                                                                        tggtAACGCGCCAGCAGTGCGCCAGGGTAGCGCATCATAAATGTCGACAGCAGATTCGTCAGAGTGAAGAACTGTTCTTCAACCTGGCTGTGCCCCCAGGTATCGCTCAACATATTGAAATCCGGCAGACGAATCATCATCACGATccc      <  1:183025/149‑1 (MQ=255)
                                                                                                                                            gaCGCGCCAGCAGTGCGCCAGGGTAGCGCATCATAAATGTCGACAGCAGATTCGTCAGAGTGAAGAACTGTTCTTCAACCTGGCTGTGCCCCCAGGTATCGCTCAACATATTGAAATCCGGCAGACGAATCATCATCACGATCCCGTgg  <  2:671771/148‑1 (MQ=255)
                                                                                                                                            aaCGCGCCAGCAGTGCGCCAGGGTAGCGCATCATAAATGTCGACAGCAGATTCGTCAGAGTGAAGAACTGTTCTTCAACCTGGCTGTGCCCCCAGGTATCGCTCAACATATTGAAATCCGGCAGACGAATCATCATCACGATCCCGTgg  >  2:776863/1‑149 (MQ=255)
                                                                                                                                            aaCGCGCCAGCAGTGCGCCAGGGTAGCGCATCATAAATGTCGACAGCAGATTCGTCAGAGTGAAGAACTGTTCTTCAACCTGGCTGTGCCCCCAGGTATCGCTCAACATATTGAAATCCGGCAGACGAATCATCATCACGATCCCGTgg  <  1:198958/149‑1 (MQ=255)
                                                                                                                                                    |                                                                                                                                            
ACCAATGTGGATCATATCGTCGCGATCGAGCATTTTATTGTTCGGCAAGGTATCAACGGCTTTGATTAACTGACCGGCGATGCTCTCTGCCTCTTTTAACGTCCGGTGCGGTAACAGCGCAGCAAAATCACTGCGGTGGTAACGCGCCAGCAGTGCGCCAGGGTAGCGCATCATAAATGTCGACAGCAGATTCGTCAGAGTGAAGAACTGTTCTTCAACCTGGCTGTGCCCCCAGGTATCGCTCAACATATTGAAATCCGGCAGACGAATCATCATCACGATCCCGTGG  >  NC_000913_3_bme_pgi/3402283‑3402571

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.