New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913_3_bme_pgi	= 3281708	48 (1.600)	4 (0.140)	4/272	3.7	7.7%	noncoding (7/82 nt)	REP239 (repetitive extragenic palindromic) element; contains 2 REP sequences	REP239 (repetitive extragenic palindromic) element; contains 2 REP sequences
	?	NC_000913_3_bme_pgi	= 3281726	50 (1.760)					noncoding (25/82 nt)	REP239 (repetitive extragenic palindromic) element; contains 2 REP sequences	REP239 (repetitive extragenic palindromic) element; contains 2 REP sequences
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

GTTGCGCTGGATAGCGGGCTACATGTGCAACAAATCTGGATTCAGGGTCAATTAGCTTCGTTTTGATAGTTTGCTCCTTTATTGGGCCTTCACTTCCCCCGTAAGGCCTTTCTTTTTCTTTCGTTTTGATCTGTGCAGCGGTGTCGGATGCGACGCTAACGCGTCTTATCCGACCTACAGTTGGTGACCGCAAGGCCGGATAAAGCGTTTGCGCCGCATCCAGCAATCCCTTTTGCTTCCTTTATCTTTTCTTTCAACGATCACAAATTTCGTTTTATTTCTTTTTTCTCCATT  >  NC_000913_3_bme_pgi/3281560‑3281853                                                                                                                                                     |                                                                                                                                                  gtTGCGCTGGATAGCGGGCTACATGTGCAACAAATCTGGATTCAGGGTCAATTAGCTTCGTTTTGATAGTTTGCTCCTTTATTGGGCCTTCACTTCCCCCGTAAGGCCTTTCTTTTTCTTTCGTTTTGATCTGTGCAGCGGTGTCGGAt                                                                                                                                                   <  2:109288/149‑1 (MQ=255)         ggATAGCGGGCTACATGTGCAACAAATCTGGATTCAGGGTCAATTAGCTTCGTGTTGATAGTTTGCTCCTTTATTGGGCCTTCACTTCCCCCGTAAGGCCTTTCTTTTTCTTTCGTTTTGATCTGTGCAGCGGTGTCGGATGCGACGCt                                                                                                                                           >  1:347741/1‑149 (MQ=255)                  gttataTGTGCAACAAATCTGCGTTCAGGGTCAATTTGCTTCGTTTTGATATTTTGCTCCTTTATTGGGCCTTCACTTCCCCCGTAAGGCCTTTCTGTTTCTTTTGTTTTGATCTGTGCAGCGGTGTCGGATGCGACGCTAACGCGTCt                                                                                                                                  <  2:498669/144‑1 (MQ=255)                       aTGTGCAACAAATCTGGATTCAGGGTCAATTAGCTTCGTTTTGATAGTTTGCTCCTTTATTGGGCCTTCACTTCCCCCGTAAGGCCTTTCTTTTTCTTTCGTTTTGATCTGTGCAGCGGTGTCGGATGCGACGCTAACGCGTCTTATcc                                                                                                                             >  1:342547/1‑149 (MQ=255)                         gtgCAACAATTCTGTATTCAGTGTAAATTAGCTTCGTTTTGATAGTTTGCTCTTTTATTGGGCCTTCATTTCCCCCGTAAGGCCTTTCTTTTTCTTTCGTTTTGATCTGTGCAGCGGTGTCGGATGCGACGCTAACGCGTCTTATCCGa                                                                                                                           <  1:278482/149‑1 (MQ=255)                           gCAACAAATCTGGATTCAGGGTCAATTAGCTTCGTTTTGATAGTTTGCTCCTTTATTGGGCCTTCACTTCCCCCGTAAGGCCTTTCTTTTTCTTTCGTTTTGATCTGTGCAGCGGTGTCGGATGCGACGCTAACGCGTCTTATCCGAcc                                                                                                                         >  1:321636/1‑149 (MQ=255)                           gCAACAAATCTGGAGTCAGGGTCAATTAGCTTCGTTTTGATAGTTTGCTCCTTTATTGGGCCTTCACTTCCCCCGTAAGGCCTTTCTTTTTCTTTCGTTTTGATCTGTGCAGCGGTGTCGGATGCGACGCTAACGCGTCTTATCCGAcc                                                                                                                         <  2:94118/149‑1 (MQ=255)                             aacaaATCTGGATTCAGGGTCAATTAGCTTCGTTTTGATAGTTTGCTCCTTTATTGGGGCTTCTCTTCCCCCGTAAGGCCTTTCTTTTTCTTTCGTTTTGATCTGTGAAGCGGTGTCGGATGCGACGCTAACGCGTCTTATCCGACCTa                                                                                                                       >  1:150986/1‑149 (MQ=255)                                  aTCTGGATTCAGGGTCAATTAGCTTCGTTTTGATAGTTTGCTCCTTTATTGGGCCTTCACTTCCCCCGTAAGGCCTTTCTTTTTCTTTCGTTTTGATCTGTGCAGCGGTGTCGGATGCGACGCTAACGCGTCTTATCCGACCTACAGtt                                                                                                                  <  2:361777/149‑1 (MQ=255)                                  aTCTGGATTCAGGGGCAAGTAGCTTCGTTTTGATAGTGTGCTCCTTTATTGGGCCTTCACTTCCCCCGTAAGGCCTTTCTTTTTCTTTCGTTTTGATCTGTGCAGCGGTGTCGGATGCGACGCTAACGCGTCTTAGCCGACCTACAGtt                                                                                                                  >  2:521576/1‑149 (MQ=255)                                   tCTGGATTCAGGGTCAATTAGCTTCGTTTTGATAGTTTGCTCCTTTATTGGGCCTTCACTTCCCCCGTAAGGCCTTTCTTTTTCTTTCGTTTTGATCTGTGCAGCGGTGTCGGATGCGACGCTAACGCGTCTTATCCGACCTACAGTTg                                                                                                                 <  1:297065/149‑1 (MQ=255)                                    cTGGATTCAGGGTCAATTAGCTTCGTTTTGATAGTTTGCTCCTTTATTGGGCCTTCACTTCCCCCGTAAGGCCTTTCTTTTTCTTTCGTTTTGATCTGTGCAGCGGTGTCGGATGCGACGCTAACGCGTCTTATCCGACCTACAGtttg                                                                                                                <  2:355953/149‑3 (MQ=255)                                     tggttgcAGGGTCAATTGGCTGCTTTTTGATAGTTTTTGCCTTTATTAGGCTTTCATTTCCCCCTTAAGGCTTTCCTCTTTTTTTCGTTTTGATCTGTGAAGCGGTGTCGGATGCGACGCTAACGCGTCTTATCCGACCTACAGTTGGt                                                                                                               <  2:255642/143‑1 (MQ=25)                                     tGGATGCATGGGCAATTAGCTTCGTTTTGATAGTTTGCTCCTTTATTGGGCCTTCACTTCCCCCGTAAGGCCTTTCTTTTTCTTTCGTTTTGATCTGTGCAGCGGTGTCGGATGCGACGCTAACGCGTCTTATCCGACCTACAGTTGGt                                                                                                               <  2:356759/149‑1 (MQ=255)                                       gATTCAGGGTCAATTAGCTTCGTTTTGAGAGTTTGCTCCTTTATTGGGCCTTCACTTCCCCCGTAAGGCCTTTCTTTTTCTTTCGTTTTGATCTGTGCAGCGGTGTCGGATGCGACGCTAACGCGTCTTATCCGACCTACAGTTGGTGa                                                                                                             <  2:349581/149‑1 (MQ=255)                                             gggTCGATTAGCGTCGCTTTGATGGTTTGGTCCTTTATTGGGCCTTCACTTCCCCCGTAAGGCCTTTCGTTTTCCTGCGTTTTGATCTGTGCAGCTGTGTCGGATGCGACGCTAACGCGTCTTATCCGACCTACAGTTGGTGACCGCaa                                                                                                       <  2:505676/149‑1 (MQ=255)                                                       gCTTCGTTTTGATAGTTTGCTCCTTTATTGGGCCTTCACTTCCCCCGTAAGGCCTTTCTGTTTCTTTCGTTTTGATCTGTGCAGCGGTGTCGGATGCGACGCTAACGCGTCTTATCCGACCTACAGTTGGTGACCGCAAGGCCCGATaa                                                                                             >  1:276994/1‑149 (MQ=255)                                                          tCGTTTTGATAGTTTGCTCCTTTATTGGGCCTTCACTTCCCCCGTAAGGCCTTTCTTTTTCTTTCGTTTTGATCTGTGCAGCGGTGTCGGATGCGACGCTAACGCGTCTTATCCGACCTACAGTTGGTGACCGCAAGGCCGGATAAAGc                                                                                          <  1:108589/149‑1 (MQ=255)                                                            gTTTTGATAGTTTGCTCCTTTATTGGGCCTTCACTTCCCCCGTACGGCCTTTCTTTTTCTTTCGTTTTGATCTGTGCAGCGGTGTCGGATGCGACGCTAACGCGTCTTATCCGACCTACAGTTGGTGACCGCaa                                                                                                       >  2:84129/1‑134 (MQ=255)                                                            gTTTTGATAGTTTGCTCCTTTATTGGGCCTTCACTTCCCCCGTAAGGCCTTTCTTTTTCTTTCGTTTTGATCTGTGCAGCGGTGTCGGATGCGACGCTAACGCGTCTTATCCGACCTACAGTTGGTGACCGCaa                                                                                                       <  1:84129/134‑1 (MQ=255)                                                             ttttGATAGTTTGCTCCTTTATTGGGCCTTCACTTCCCCCGTAAGGCCTTTCTTTTTCTTTCGTTTTGATCTGTGCAGCGGTGTCGGATGCGACGCTAACGCGTCTTATCCGACCTACAGTTGGTGACCGCAAGGCCGGATAAAGCGtt                                                                                       >  1:34513/1‑149 (MQ=255)                                                             ttttGATAGTTTGCTCCTTTATTGGGCCTTCACTTCCCCCGTAAGGCCTTTCTTTTTCTTTCGTTTTGATATGTGCAGCGGTGTCGGATGCGACGCTGACGCGTCTTATCCGACCTACAGTTGGTGACCGCAAGGCCGGATACAACGtt                                                                                       >  1:450009/1‑149 (MQ=255)                                                                      tttGCTCCTTTATTGGGCCTTCACTTCCCCCGTAAGGCCTTTCTTTTTCTTTCGTTTTGATCTGTGCAGCGGTGTCGGATGCGACGCTAACGCGTCTTATCCGACCTACAGTTGGTGACCGCAAGGCCGGATAAAGCGTTAGCGCCGCa                                                                              >  1:21821/1‑149 (MQ=255)                                                                      tttGCTCCTTTATTGGGCCTTCACTTCCCCCGTAAGGCCTTTCTTTTTCTTTCGTTTTGATCTGTGCAACTGTGTCGGATTCAACGCTAACGCATCTTATCCGACCTACAGTTTTTCACCGCCAGTCCGGCTACACCGTTTgaccccaa                                                                              >  2:17511/1‑142 (MQ=255)                                                                           tCCTTTATTGGGCCTTCACTTCCCCCGTAAGGCCTTTCTTTTTCTTTCGTTTTGATCTGTGCAGCGGTGTCGGATGCGACGCTAACGCGTCTTATCCGACCTACAGTTGGTGACCGCAAGGCCGGATAAAGCGTTTGCGCCGCATCCAg                                                                         >  2:209420/1‑149 (MQ=255)                                                                             cTTTATTGGGCCTTCACTTCCCCCGTAAGGCCTTTCTTTTTCTTTCGTTTTGATCTGTGCAGCGGTGTCGGATGCGACGCTAACGCGTCTTATCCGACCTACAGTTGGTGACCGCAAGGCCGGATAAAGCGTTTGCGCCGCATCCAGCa                                                                       >  2:167844/1‑149 (MQ=255)                                                                               ttATTGGGCCTTCACTTCCCCCGTAAGGCCTTTCTTTTTCTTTCGTTTTGATCTGTGCAGCGGTGTCGGATGCGATTCTAACGCGTCTCATCCGACCTACAGTTGGTGACCGCAAGGCCGGATAAAGCGTTTGCGCCGCATCCAGCAAt                                                                     <  1:469292/149‑1 (MQ=255)                                                                                    gggCCTTCACTTCCCCCGTAAGGCCTTTCTTTTTCTTTCGTTTTGATCTGTGCAGCGGTGTCGGATGCGCCGCTAACGCGTCTTATCCGACCTACAGTTGGTGACCGCAAGGCCGGATAACGCGTTTGCGCCGCATCCCGCCATCCCtt                                                                >  1:455902/1‑149 (MQ=255)                                                                                      gCCTTCACGTCCCCCGTAAGGCCTTTCTTTTTCTTTCGTTTTGATCTGTGCAGCGGTGGCGGATGCGACGCTAACGCGTCTTATCCGACCTACAGTTGGTGACCGCAAGGCCGGATAAAGCGTTTGCGCCGCATCCAGCAATCCCtttt                                                              <  1:387564/149‑1 (MQ=255)                                                                                       ccTTCACTTCCCCCGTAAGGCCTTTCTTTTTCTTTCGTTTTGATCTGTGCAGCGGTGTCGGATGCGACGCTAACGCGTCTTATCCGACCTACAGTTGGTGACCGCAAGGCCGGATAAAGCGTTTGCGCCGCATCCAGCAATCCCTTTTg                                                             <  1:167844/149‑1 (MQ=255)                                                                                         ttCACTTCCCCCGTAAGGCCTTTCTTTTTCTTTCGTTTTGATCTGTGCAGCGGTGTCGGATGCGACGCTAACGCGTCTTATCCGACCTACAGTTGGTGACCGCAAGGCCGGATAAAACGTTTGCACCGCATCCAGCAAGCCCTTTTGCt                                                           >  1:225955/1‑149 (MQ=255)                                                                                           cACTTCCCCCGTAAGGCCTTTCTTTTTCTTTCGTTTTGATCTGTGCAGCGGTGTCGGATGCGACGCTAACGCGTCTTATCCGACCTAGTGTTGGTGACCGCAAGGCCGGATAAAGCGTTTGCGCCGCATCCAGCAATCCCTTTTGCTTc                                                         <  1:366038/149‑1 (MQ=255)                                                                                            aCTTCCCCCGTAAGGCCTTTCTTTTTCTTTCGTTTTTATCTGTGCAGCGGTGTCGGATGCGACGCTAACGCGTCTTATCCGACCTACAGTTGGTGACCGCAAGGCCGGATAAAGCGTTTGCGCCGCATCCAGCAATCCCTTTTGCTTcc                                                        >  2:61542/1‑149 (MQ=255)                                                                                              ttCCCCCGTCAGGCCATTCTTTTTCTTTCGTTTTGATCTGTGCAGCGGGGTCGGATGCGACGCTAACGCGTCTTATCCGACCTACAGTTGCTGACCGCAAGGCCGGATAAAGCGTTTTCGCCGCATCCAGCAATCCCTTTTGCTTCCtt                                                      >  2:459648/1‑149 (MQ=255)                                                                                                    cGTAAGGCCTTTCTTTTTCTTTAGTTTAGATCTGTGCAGCGGGTTCGGCTGATACACTAACGCGTATTATCCGACCTACAGTTGGTGACCGCAAGACCGGAAAAAGCGTTAGCGCCGCAACCAGCAATCCCCTTTGCCTCCTTTAtctt                                                >  2:147569/1‑149 (MQ=255)                                                                                                             tttctttttcttTCGTTTTGATCTGTGCAGCGGTGTCGGATGCGACGCTAACGCGTCTTCTCCGACCTACAGTTGGTGACCGCAAGGCCGGATAAAGCGTTTGCGCCGCATCCAGCAATCCCTTTTGCTTCCTTTATCTTTTCTTTCaa                                       >  1:213702/1‑149 (MQ=255)                                                                                                             tttctttttcttTCGTTTTGATCTGTGCAGCGGTGTCGGATGCGACGCTAACGCGTCTTATCCGACCTACATTTGGTGACCGCAAATCCTGTTAAAGCGTTTGCGCCGCATCCAGCAATCCCTTTTGCTTCCTTTATCTTTTCTTTCaa                                       <  1:390193/149‑1 (MQ=39)                                                                                                             tttctttttcttTCGTTTTGATCTGTGCAGCGGTGTCGGATGCGACGCTAACGCGTCTTATCCGACCTACAGTTGGTGACCGCAAGGCCGGATAAAGCGTTTGCGCCGCATCCAGCAATCGCTTTTGCTTACTTTATTTTTTTTTTCaa                                       >  1:297376/1‑149 (MQ=255)                                                                                                             tttctttttcttTCGTTTTGATCTGTGCAGCGGTGTCGGATGCGACGCTAACGCGTCTTATCCGACCTACAGTTGGTGACCGCAAGGCCGGATAAAGCGTTTGCGCCGCATCCAGCAATCCCTTTTGCTTCCTTTATCTTTTCTTTCaa                                       >  2:262505/1‑149 (MQ=255)                                                                                                                 tttttctttCGTTTTGATCTGTGCAGCGGTGTCGGATGCGACGCTAACGCGTCTTATCCGACCTACAGTTGGTGACCGCAAGGCCGGATAAAGCGTTTGCGCCGCATCCAGCAATCCCTTTTGCTTCCTTTATCTTTTCTTTCAACGAt                                   >  1:56464/1‑149 (MQ=255)                                                                                                                       tttcGTTTTGATCTGTGCAGCGGTGTCGGATGCGACGCTAACGCGTCTTATCCGACCTACAGTTGGTGACCGCAAGGCCGGATAAAGCGTTTGCGCCGCATCCAg                                                                         <  2:286376/105‑1 (MQ=255)                                                                                                                       tttcGTTTTGATCTGTGCAGCGGTGTCGGATGCGACGCTAACGCGTCTTATCCGACCTACAGTTGGTGACCGCAAGGCCGGATAAAGCGTTTGCGCCGCATCCAg                                                                         >  1:286376/1‑105 (MQ=255)                                                                                                                       tttcGTTTTGATCTGTGCAGCGGTGTCGGATGCGACGCTAACGCGTCTTATCCGACCTACAGTTGGTGACCGCAAGGCCGGATAAAGCGTTTGCGCCGCATCCAGCAATCCCTTTTGCTTCCTTTAtcttt                                               >  2:317706/1‑131 (MQ=255)                                                                                                                       tttcGTTTTGATCTGTGCAGCGGTGTCGGATGCGACGCTAACGCGTCTTATCCGACCTACAGTTGGTGACCGCAAGGCCGGATAAAGCGTTTGCGCCGCATCCAGCAATCCCTTTTGCTTCCTTTAtcttt                                               <  1:317706/131‑1 (MQ=255)                                                                                                                           gTTTTGATCTGTGCAGCGGTGTCGGATGCGACGCTAACGCGTCTTATCCGACCTACAGTTGGTGACCGCACAGCCGGATAAAGCGTTTGCGCCGCATCCAGCAATCCCTTTTGCTTCCTTTATCTTTTCTTTCAACGATCACAAATTTc                         >  1:73797/1‑149 (MQ=255)                                                                                                                                          gCGGTGTCGGATGCGACGCTAACGCGTCTTATCCGACCTACAGTTGGTGACCGCAAGGCCGGATAAAGCGTTTGCGCCGCATCCAGCAATCCCTTTTGCTTCCTTTATCTTTTCTTTCAACGATCACAAATTTCGTTTTATTTCttttt          <  1:4141/149‑1 (MQ=255)                                                                                                                                                tCGGATGCGACGCTAACGCGTCTTATCCGACCTACAGTTGGTGACCGCAAGGCCGGATAAAGCGTTTGCGCCGCATCCAGCAATCCCTTTTGCTTCCTTTATCTTTTCTTTCAACGATCACAAATTTCGTTTTATTTCTTTTTTCTCCa    <  2:342547/149‑1 (MQ=255)                                                                                                                                                  ggATGCGACGGTAACGCGTCTTATCCGACCTAGAGTTGGTGACCGCAAGGCCGGATAAAGCGTTTGCGCCGCATCCAGCAATCCCTTTTGCTTCCTTTATCTTTTCTTTCAACGATCACAAATTTCGTTTTATTTCTTTTTTCTCCAtt  <  2:83787/149‑1 (MQ=255)                                                                                                                                                  ggATGCGACGCTAACGCGTCTTATCCGACCTACAGTTGGTGACCGCAAGGCCGGATAAAGCGTTTTCGCCGCATCCAGCAATCCCTTTTGCTTCCTTTATCTTTTCTTTAAACGAACACAAATTTCGTTTTATTTCTTTTTTCTCCAtt  >  1:150754/1‑149 (MQ=255)                                                                                                                                                     |                                                                                                                                                  GTTGCGCTGGATAGCGGGCTACATGTGCAACAAATCTGGATTCAGGGTCAATTAGCTTCGTTTTGATAGTTTGCTCCTTTATTGGGCCTTCACTTCCCCCGTAAGGCCTTTCTTTTTCTTTCGTTTTGATCTGTGCAGCGGTGTCGGATGCGACGCTAACGCGTCTTATCCGACCTACAGTTGGTGACCGCAAGGCCGGATAAAGCGTTTGCGCCGCATCCAGCAATCCCTTTTGCTTCCTTTATCTTTTCTTTCAACGATCACAAATTTCGTTTTATTTCTTTTTTCTCCATT  >  NC_000913_3_bme_pgi/3281560‑3281853

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.