New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913_3_bme_pgi	= 3281708	48 (1.600)	4 (0.140)	4/272	3.7	7.7%	noncoding (7/82 nt)	REP239 (repetitive extragenic palindromic) element; contains 2 REP sequences	REP239 (repetitive extragenic palindromic) element; contains 2 REP sequences
	?	NC_000913_3_bme_pgi	= 3281726	50 (1.760)					noncoding (25/82 nt)	REP239 (repetitive extragenic palindromic) element; contains 2 REP sequences	REP239 (repetitive extragenic palindromic) element; contains 2 REP sequences
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

ATGTGCAACAAATCTGGATTCAGGGTCAATTAGCTTCGTTTTGATAGTTTGCTCCTTTATTGGGCCTTCACTTCCCCCGTAAGGCCTTTCTTTTTCTTTCGTTTTGATCTGTGCAGCGGTGTCGGATGCGACGCTAACGCGTCTTATCCGACCTACAGTTGGTGACCGCAAGGCCGGATAAAGCGTTTGCGCCGCATCCAGCAATCCCTTTTGCTTCCTTTATCTTTTCTTTCAACGATCACAAATTTCGTTTTATTTCTTTTTTCTCCATTGAACTTTCAGTTTCTTTTC  >  NC_000913_3_bme_pgi/3281582‑3281872                                                                                                                                                 |                                                                                                                                                   aTGTGCAACAAATCTGGATTCAGGGTCAATTAGCTTCGTTTTGATAGTTTGCTCCTTTATTGGGCCTTCACTTCCCCCGTAAGGCCTTTCTTTTTCTTTCGTTTTGATCTGTGCAGCGGTGTCGGATGCGACGCTAACGCGTCTTATcc                                                                                                                                                >  1:342547/1‑149 (MQ=255)   gtgCAACAATTCTGTATTCAGTGTAAATTAGCTTCGTTTTGATAGTTTGCTCTTTTATTGGGCCTTCATTTCCCCCGTAAGGCCTTTCTTTTTCTTTCGTTTTGATCTGTGCAGCGGTGTCGGATGCGACGCTAACGCGTCTTATCCGa                                                                                                                                              <  1:278482/149‑1 (MQ=255)     gCAACAAATCTGGATTCAGGGTCAATTAGCTTCGTTTTGATAGTTTGCTCCTTTATTGGGCCTTCACTTCCCCCGTAAGGCCTTTCTTTTTCTTTCGTTTTGATCTGTGCAGCGGTGTCGGATGCGACGCTAACGCGTCTTATCCGAcc                                                                                                                                            >  1:321636/1‑149 (MQ=255)     gCAACAAATCTGGAGTCAGGGTCAATTAGCTTCGTTTTGATAGTTTGCTCCTTTATTGGGCCTTCACTTCCCCCGTAAGGCCTTTCTTTTTCTTTCGTTTTGATCTGTGCAGCGGTGTCGGATGCGACGCTAACGCGTCTTATCCGAcc                                                                                                                                            <  2:94118/149‑1 (MQ=255)       aacaaATCTGGATTCAGGGTCAATTAGCTTCGTTTTGATAGTTTGCTCCTTTATTGGGGCTTCTCTTCCCCCGTAAGGCCTTTCTTTTTCTTTCGTTTTGATCTGTGAAGCGGTGTCGGATGCGACGCTAACGCGTCTTATCCGACCTa                                                                                                                                          >  1:150986/1‑149 (MQ=255)            aTCTGGATTCAGGGTCAATTAGCTTCGTTTTGATAGTTTGCTCCTTTATTGGGCCTTCACTTCCCCCGTAAGGCCTTTCTTTTTCTTTCGTTTTGATCTGTGCAGCGGTGTCGGATGCGACGCTAACGCGTCTTATCCGACCTACAGtt                                                                                                                                     <  2:361777/149‑1 (MQ=255)            aTCTGGATTCAGGGGCAAGTAGCTTCGTTTTGATAGTGTGCTCCTTTATTGGGCCTTCACTTCCCCCGTAAGGCCTTTCTTTTTCTTTCGTTTTGATCTGTGCAGCGGTGTCGGATGCGACGCTAACGCGTCTTAGCCGACCTACAGtt                                                                                                                                     >  2:521576/1‑149 (MQ=255)             tCTGGATTCAGGGTCAATTAGCTTCGTTTTGATAGTTTGCTCCTTTATTGGGCCTTCACTTCCCCCGTAAGGCCTTTCTTTTTCTTTCGTTTTGATCTGTGCAGCGGTGTCGGATGCGACGCTAACGCGTCTTATCCGACCTACAGTTg                                                                                                                                    <  1:297065/149‑1 (MQ=255)              cTGGATTCAGGGTCAATTAGCTTCGTTTTGATAGTTTGCTCCTTTATTGGGCCTTCACTTCCCCCGTAAGGCCTTTCTTTTTCTTTCGTTTTGATCTGTGCAGCGGTGTCGGATGCGACGCTAACGCGTCTTATCCGACCTACAGtttg                                                                                                                                   <  2:355953/149‑3 (MQ=255)               tggttgcAGGGTCAATTGGCTGCTTTTTGATAGTTTTTGCCTTTATTAGGCTTTCATTTCCCCCTTAAGGCTTTCCTCTTTTTTTCGTTTTGATCTGTGAAGCGGTGTCGGATGCGACGCTAACGCGTCTTATCCGACCTACAGTTGGt                                                                                                                                  <  2:255642/143‑1 (MQ=25)               tGGATGCATGGGCAATTAGCTTCGTTTTGATAGTTTGCTCCTTTATTGGGCCTTCACTTCCCCCGTAAGGCCTTTCTTTTTCTTTCGTTTTGATCTGTGCAGCGGTGTCGGATGCGACGCTAACGCGTCTTATCCGACCTACAGTTGGt                                                                                                                                  <  2:356759/149‑1 (MQ=255)                 gATTCAGGGTCAATTAGCTTCGTTTTGAGAGTTTGCTCCTTTATTGGGCCTTCACTTCCCCCGTAAGGCCTTTCTTTTTCTTTCGTTTTGATCTGTGCAGCGGTGTCGGATGCGACGCTAACGCGTCTTATCCGACCTACAGTTGGTGa                                                                                                                                <  2:349581/149‑1 (MQ=255)                       gggTCGATTAGCGTCGCTTTGATGGTTTGGTCCTTTATTGGGCCTTCACTTCCCCCGTAAGGCCTTTCGTTTTCCTGCGTTTTGATCTGTGCAGCTGTGTCGGATGCGACGCTAACGCGTCTTATCCGACCTACAGTTGGTGACCGCaa                                                                                                                          <  2:505676/149‑1 (MQ=255)                                 gCTTCGTTTTGATAGTTTGCTCCTTTATTGGGCCTTCACTTCCCCCGTAAGGCCTTTCTGTTTCTTTCGTTTTGATCTGTGCAGCGGTGTCGGATGCGACGCTAACGCGTCTTATCCGACCTACAGTTGGTGACCGCAAGGCCCGATaa                                                                                                                >  1:276994/1‑149 (MQ=255)                                    tCGTTTTGATAGTTTGCTCCTTTATTGGGCCTTCACTTCCCCCGTAAGGCCTTTCTTTTTCTTTCGTTTTGATCTGTGCAGCGGTGTCGGATGCGACGCTAACGCGTCTTATCCGACCTACAGTTGGTGACCGCAAGGCCGGATAAAGc                                                                                                             <  1:108589/149‑1 (MQ=255)                                      gTTTTGATAGTTTGCTCCTTTATTGGGCCTTCACTTCCCCCGTACGGCCTTTCTTTTTCTTTCGTTTTGATCTGTGCAGCGGTGTCGGATGCGACGCTAACGCGTCTTATCCGACCTACAGTTGGTGACCGCaa                                                                                                                          >  2:84129/1‑134 (MQ=255)                                      gTTTTGATAGTTTGCTCCTTTATTGGGCCTTCACTTCCCCCGTAAGGCCTTTCTTTTTCTTTCGTTTTGATCTGTGCAGCGGTGTCGGATGCGACGCTAACGCGTCTTATCCGACCTACAGTTGGTGACCGCaa                                                                                                                          <  1:84129/134‑1 (MQ=255)                                       ttttGATAGTTTGCTCCTTTATTGGGCCTTCACTTCCCCCGTAAGGCCTTTCTTTTTCTTTCGTTTTGATCTGTGCAGCGGTGTCGGATGCGACGCTAACGCGTCTTATCCGACCTACAGTTGGTGACCGCAAGGCCGGATAAAGCGtt                                                                                                          >  1:34513/1‑149 (MQ=255)                                       ttttGATAGTTTGCTCCTTTATTGGGCCTTCACTTCCCCCGTAAGGCCTTTCTTTTTCTTTCGTTTTGATATGTGCAGCGGTGTCGGATGCGACGCTGACGCGTCTTATCCGACCTACAGTTGGTGACCGCAAGGCCGGATACAACGtt                                                                                                          >  1:450009/1‑149 (MQ=255)                                                tttGCTCCTTTATTGGGCCTTCACTTCCCCCGTAAGGCCTTTCTTTTTCTTTCGTTTTGATCTGTGCAGCGGTGTCGGATGCGACGCTAACGCGTCTTATCCGACCTACAGTTGGTGACCGCAAGGCCGGATAAAGCGTTAGCGCCGCa                                                                                                 >  1:21821/1‑149 (MQ=255)                                                tttGCTCCTTTATTGGGCCTTCACTTCCCCCGTAAGGCCTTTCTTTTTCTTTCGTTTTGATCTGTGCAACTGTGTCGGATTCAACGCTAACGCATCTTATCCGACCTACAGTTTTTCACCGCCAGTCCGGCTACACCGTTTgaccccaa                                                                                                 >  2:17511/1‑142 (MQ=255)                                                     tCCTTTATTGGGCCTTCACTTCCCCCGTAAGGCCTTTCTTTTTCTTTCGTTTTGATCTGTGCAGCGGTGTCGGATGCGACGCTAACGCGTCTTATCCGACCTACAGTTGGTGACCGCAAGGCCGGATAAAGCGTTTGCGCCGCATCCAg                                                                                            >  2:209420/1‑149 (MQ=255)                                                       cTTTATTGGGCCTTCACTTCCCCCGTAAGGCCTTTCTTTTTCTTTCGTTTTGATCTGTGCAGCGGTGTCGGATGCGACGCTAACGCGTCTTATCCGACCTACAGTTGGTGACCGCAAGGCCGGATAAAGCGTTTGCGCCGCATCCAGCa                                                                                          >  2:167844/1‑149 (MQ=255)                                                         ttATTGGGCCTTCACTTCCCCCGTAAGGCCTTTCTTTTTCTTTCGTTTTGATCTGTGCAGCGGTGTCGGATGCGATTCTAACGCGTCTCATCCGACCTACAGTTGGTGACCGCAAGGCCGGATAAAGCGTTTGCGCCGCATCCAGCAAt                                                                                        <  1:469292/149‑1 (MQ=255)                                                              gggCCTTCACTTCCCCCGTAAGGCCTTTCTTTTTCTTTCGTTTTGATCTGTGCAGCGGTGTCGGATGCGCCGCTAACGCGTCTTATCCGACCTACAGTTGGTGACCGCAAGGCCGGATAACGCGTTTGCGCCGCATCCCGCCATCCCtt                                                                                   >  1:455902/1‑149 (MQ=255)                                                                gCCTTCACGTCCCCCGTAAGGCCTTTCTTTTTCTTTCGTTTTGATCTGTGCAGCGGTGGCGGATGCGACGCTAACGCGTCTTATCCGACCTACAGTTGGTGACCGCAAGGCCGGATAAAGCGTTTGCGCCGCATCCAGCAATCCCtttt                                                                                 <  1:387564/149‑1 (MQ=255)                                                                 ccTTCACTTCCCCCGTAAGGCCTTTCTTTTTCTTTCGTTTTGATCTGTGCAGCGGTGTCGGATGCGACGCTAACGCGTCTTATCCGACCTACAGTTGGTGACCGCAAGGCCGGATAAAGCGTTTGCGCCGCATCCAGCAATCCCTTTTg                                                                                <  1:167844/149‑1 (MQ=255)                                                                   ttCACTTCCCCCGTAAGGCCTTTCTTTTTCTTTCGTTTTGATCTGTGCAGCGGTGTCGGATGCGACGCTAACGCGTCTTATCCGACCTACAGTTGGTGACCGCAAGGCCGGATAAAACGTTTGCACCGCATCCAGCAAGCCCTTTTGCt                                                                              >  1:225955/1‑149 (MQ=255)                                                                     cACTTCCCCCGTAAGGCCTTTCTTTTTCTTTCGTTTTGATCTGTGCAGCGGTGTCGGATGCGACGCTAACGCGTCTTATCCGACCTAGTGTTGGTGACCGCAAGGCCGGATAAAGCGTTTGCGCCGCATCCAGCAATCCCTTTTGCTTc                                                                            <  1:366038/149‑1 (MQ=255)                                                                      aCTTCCCCCGTAAGGCCTTTCTTTTTCTTTCGTTTTTATCTGTGCAGCGGTGTCGGATGCGACGCTAACGCGTCTTATCCGACCTACAGTTGGTGACCGCAAGGCCGGATAAAGCGTTTGCGCCGCATCCAGCAATCCCTTTTGCTTcc                                                                           >  2:61542/1‑149 (MQ=255)                                                                        ttCCCCCGTCAGGCCATTCTTTTTCTTTCGTTTTGATCTGTGCAGCGGGGTCGGATGCGACGCTAACGCGTCTTATCCGACCTACAGTTGCTGACCGCAAGGCCGGATAAAGCGTTTTCGCCGCATCCAGCAATCCCTTTTGCTTCCtt                                                                         >  2:459648/1‑149 (MQ=255)                                                                              cGTAAGGCCTTTCTTTTTCTTTAGTTTAGATCTGTGCAGCGGGTTCGGCTGATACACTAACGCGTATTATCCGACCTACAGTTGGTGACCGCAAGACCGGAAAAAGCGTTAGCGCCGCAACCAGCAATCCCCTTTGCCTCCTTTAtctt                                                                   >  2:147569/1‑149 (MQ=255)                                                                                       tttctttttcttTCGTTTTGATCTGTGCAGCGGTGTCGGATGCGACGCTAACGCGTCTTCTCCGACCTACAGTTGGTGACCGCAAGGCCGGATAAAGCGTTTGCGCCGCATCCAGCAATCCCTTTTGCTTCCTTTATCTTTTCTTTCaa                                                          >  1:213702/1‑149 (MQ=255)                                                                                       tttctttttcttTCGTTTTGATCTGTGCAGCGGTGTCGGATGCGACGCTAACGCGTCTTATCCGACCTACATTTGGTGACCGCAAATCCTGTTAAAGCGTTTGCGCCGCATCCAGCAATCCCTTTTGCTTCCTTTATCTTTTCTTTCaa                                                          <  1:390193/149‑1 (MQ=39)                                                                                       tttctttttcttTCGTTTTGATCTGTGCAGCGGTGTCGGATGCGACGCTAACGCGTCTTATCCGACCTACAGTTGGTGACCGCAAGGCCGGATAAAGCGTTTGCGCCGCATCCAGCAATCGCTTTTGCTTACTTTATTTTTTTTTTCaa                                                          >  1:297376/1‑149 (MQ=255)                                                                                       tttctttttcttTCGTTTTGATCTGTGCAGCGGTGTCGGATGCGACGCTAACGCGTCTTATCCGACCTACAGTTGGTGACCGCAAGGCCGGATAAAGCGTTTGCGCCGCATCCAGCAATCCCTTTTGCTTCCTTTATCTTTTCTTTCaa                                                          >  2:262505/1‑149 (MQ=255)                                                                                           tttttctttCGTTTTGATCTGTGCAGCGGTGTCGGATGCGACGCTAACGCGTCTTATCCGACCTACAGTTGGTGACCGCAAGGCCGGATAAAGCGTTTGCGCCGCATCCAGCAATCCCTTTTGCTTCCTTTATCTTTTCTTTCAACGAt                                                      >  1:56464/1‑149 (MQ=255)                                                                                                 tttcGTTTTGATCTGTGCAGCGGTGTCGGATGCGACGCTAACGCGTCTTATCCGACCTACAGTTGGTGACCGCAAGGCCGGATAAAGCGTTTGCGCCGCATCCAg                                                                                            <  2:286376/105‑1 (MQ=255)                                                                                                 tttcGTTTTGATCTGTGCAGCGGTGTCGGATGCGACGCTAACGCGTCTTATCCGACCTACAGTTGGTGACCGCAAGGCCGGATAAAGCGTTTGCGCCGCATCCAg                                                                                            >  1:286376/1‑105 (MQ=255)                                                                                                 tttcGTTTTGATCTGTGCAGCGGTGTCGGATGCGACGCTAACGCGTCTTATCCGACCTACAGTTGGTGACCGCAAGGCCGGATAAAGCGTTTGCGCCGCATCCAGCAATCCCTTTTGCTTCCTTTAtcttt                                                                  >  2:317706/1‑131 (MQ=255)                                                                                                 tttcGTTTTGATCTGTGCAGCGGTGTCGGATGCGACGCTAACGCGTCTTATCCGACCTACAGTTGGTGACCGCAAGGCCGGATAAAGCGTTTGCGCCGCATCCAGCAATCCCTTTTGCTTCCTTTAtcttt                                                                  <  1:317706/131‑1 (MQ=255)                                                                                                     gTTTTGATCTGTGCAGCGGTGTCGGATGCGACGCTAACGCGTCTTATCCGACCTACAGTTGGTGACCGCACAGCCGGATAAAGCGTTTGCGCCGCATCCAGCAATCCCTTTTGCTTCCTTTATCTTTTCTTTCAACGATCACAAATTTc                                            >  1:73797/1‑149 (MQ=255)                                                                                                                    gCGGTGTCGGATGCGACGCTAACGCGTCTTATCCGACCTACAGTTGGTGACCGCAAGGCCGGATAAAGCGTTTGCGCCGCATCCAGCAATCCCTTTTGCTTCCTTTATCTTTTCTTTCAACGATCACAAATTTCGTTTTATTTCttttt                             <  1:4141/149‑1 (MQ=255)                                                                                                                          tCGGATGCGACGCTAACGCGTCTTATCCGACCTACAGTTGGTGACCGCAAGGCCGGATAAAGCGTTTGCGCCGCATCCAGCAATCCCTTTTGCTTCCTTTATCTTTTCTTTCAACGATCACAAATTTCGTTTTATTTCTTTTTTCTCCa                       <  2:342547/149‑1 (MQ=255)                                                                                                                            ggATGCGACGGTAACGCGTCTTATCCGACCTAGAGTTGGTGACCGCAAGGCCGGATAAAGCGTTTGCGCCGCATCCAGCAATCCCTTTTGCTTCCTTTATCTTTTCTTTCAACGATCACAAATTTCGTTTTATTTCTTTTTTCTCCAtt                     <  2:83787/149‑1 (MQ=255)                                                                                                                            ggATGCGACGCTAACGCGTCTTATCCGACCTACAGTTGGTGACCGCAAGGCCGGATAAAGCGTTTTCGCCGCATCCAGCAATCCCTTTTGCTTCCTTTATCTTTTCTTTAAACGAACACAAATTTCGTTTTATTTCTTTTTTCTCCAtt                     >  1:150754/1‑149 (MQ=255)                                                                                                                                     gCTAACGCGTCTTATCCGACCTACAGTTGGTGACCGCAAGGCCGGATAAAGCGTTTGCGCCGCATCCAGCAATCCCTTTTGCTTCCTTTATCTTTTCTTTCAACGATCACAAATTTCGTTTTATTTCTTTTTTCTCCATTGAACTTTCa            <  2:34513/149‑1 (MQ=255)                                                                                                                                      cTAACGCGTCTTATCCGACCTACAGTTGGTGACCGCAAGGCCGGATAAAGCGTTTGCGCCGCATCCAGCAATCCCTTTTGCTTCCTTTATCTTTTCTTTCAACGATCACAAATTTCGTTTTATTTCTTTTTTCTCCATTGAACTTTCAg           <  1:327245/149‑1 (MQ=255)                                                                                                                                         aCGCGTCTTATCCGACCTACAGTTGGTGACCGCAAGGCCGGATAAAGCGTTTGCGCCGCATCCAGCAATCCCTTTTGCTTCCTTTATCTTTTCTTTCAACGATCACAAATTTCGTTTTTTTTCTTTTTTCTTCCTTGAACTTTCAGctt        >  2:21850/1‑149 (MQ=255)                                                                                                                                         aCGCGTCTTATCCGACCTACAGTTGGTGACCGCAAGGCCGGATAAAGCGTTTACGCCTCATCCAGCAATCCCTTTTGCTTCCTTTATCTTTTCTTTCAACGATCACAAATTTCGTTTTATTTCTTTTTTCTCCATTGAACTTTCAGttt        >  1:497690/1‑149 (MQ=255)                                                                                                                                           gcgTCTTATCCGACCTACAGTTGGTGACCGCAAGGCCGGATAAAGCGTTTGCGCCGCATCCAGCAATCCCTTTTGCTTCCTTTATCTTTTCTTTCAACGATCACAAATTTCGTTTTATTTCTTTTTTCTCCATTGAACTTTCAGtttct      >  1:450740/1‑149 (MQ=255)                                                                                                                                               cTTATCCGACCTACAGTTGGTGACCGCAAGGCCGGATAAAGCGTTTGCGCCGCATCCAGCAATCCCTTTTGCTTCCTTTATCTTTTCTTTCAACGATCACAAATTTCGTTTTATTTCTTTTTTCTCCATTGAACTTTCAGtttctttta  >  1:257593/1‑148 (MQ=255)                                                                                                                                                 |                                                                                                                                                   ATGTGCAACAAATCTGGATTCAGGGTCAATTAGCTTCGTTTTGATAGTTTGCTCCTTTATTGGGCCTTCACTTCCCCCGTAAGGCCTTTCTTTTTCTTTCGTTTTGATCTGTGCAGCGGTGTCGGATGCGACGCTAACGCGTCTTATCCGACCTACAGTTGGTGACCGCAAGGCCGGATAAAGCGTTTGCGCCGCATCCAGCAATCCCTTTTGCTTCCTTTATCTTTTCTTTCAACGATCACAAATTTCGTTTTATTTCTTTTTTCTCCATTGAACTTTCAGTTTCTTTTC  >  NC_000913_3_bme_pgi/3281582‑3281872

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.