| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913_3_bme_pgi | 2304722 = | 17 (0.410) | 8 (0.200) | 6/276 | 4.8 | 21.0% | noncoding (306/655 nt) | REP161 (repetitive extragenic palindromic) element; contains 12 REP sequences | REP161 (repetitive extragenic palindromic) element; contains 12 REP sequences |
| ? | NC_000913_3_bme_pgi | = 2347232 | 44 (1.110) | noncoding (73/203 nt) | REP164 (repetitive extragenic palindromic) element; contains 5 REP sequences | REP164 (repetitive extragenic palindromic) element; contains 5 REP sequences | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
TAGGTCGGATAAGGCGGTTACGCCGCATCCGACATCTAACGCCCAAGCCGGTTGCCTGATGCGACGCTGGCGCGT‑CTTATCAGGCCTACACCGCTGTGAAGTGCTCCACCCCGTAGGTTGGATAAGGCGGTTACGCCGCATCCGACATCCAACGTCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAA > NC_000913_3_bme_pgi/2304644‑2304856 | tAGGTCGGATAAGGCGGTTACGCCGCATCCGACATCTAACGCCCAAGCCGGTTGCCTGATGCGACGCTGGCGCGT‑CTTATCAGGCCTACACCGCTGTGAAGTGCTCCACCCCGTAGGTTGGATAAGGCGGTTACGCCGCATCCGACATc > 2:673942/1‑149 (MQ=32) aGGTCGGATAAGGCGGTTACGCCGCATCCGACATCTACCGCCGTGGCCGGTTGCCTGATGCGACGCTGGCGCGT‑CTTATCAGGCCTACACCGCTGTGAAGTGCTCCACCCCGTAGGTTGGATAAGGCGGTTACGCCGCATCCGACATcc < 1:384150/149‑1 (MQ=255) ggTCGGATAAGGCGGTCACGCCGCATCCGACATCAAACCCCCAAGCCGGTTGCCTGATGCGACGCTGGCGCGT‑CTTATCAGGCCTACACCGCTGTGAAGTGCTCCACCCCGTAGGTTGGATAAGGCGGTTACGCCGCATCCGACATCCa < 2:475131/149‑1 (MQ=255) gCGGTTACGCCGCATCCGACATCTAACGCCCAAGCCGGTTGCCTGATGCGACGCTGGCGCGT‑CTTACCAGGCCTACACCGCTCCGACGTGCTCCACCCCGTAGGTTGGATAAGGCGGGTGCGCCGCCTCCGACATCCCACCCCCGCGcc > 2:311843/1‑149 (MQ=11) gccgcATCCGACATCTAACCCCCAAGCCGGTTGCCTGATGCGACGCTGGCGCGT‑CTTATCAGGCCTACACCGCTGTGAAGTGCTCCACCCCGTAGGTTGGATAAGGCGGTTACGCCGCTTCGGACATCGAACGTCCGAGCCGGTTGCCt < 1:712926/149‑1 (MQ=255) cATCCGACATCTAACGCCCGAGCGGGTTGCCTGATGCGACGCTGTCGCGT‑CTTATCAGGCCTACCCCGCTGTGAAGTGCTCCACCCCGTAGGTTGGATCAGGCGGTCACGCCGCATCCGATATCCAACGTCGGAGCCGGTTGCTTGATg < 2:477012/149‑1 (MQ=11) cATCCGACATCTAACGCCCAAGCCGGTTGCCTGATGCGACGCTGGCGCGT‑CTTATCTTGCCTACACCGCTGTGAAGTGCTCCACCCCGTAGGTTGGATAAGGCGGTTACGCCGCATCCGACATCCAACGTCCGAGCCGGTTGCCTGATg < 1:505735/149‑1 (MQ=255) ccGACATCTAACGCCCCAGCCGGTTGCCTGATGCGACGCTGGAGAATACGCGTTA‑GCGTAGACCGCTGTGTAGGGCTCCACCCCGTAGGTTGGATAAGGCGGTTACGCCGCATCCGACATCCAACGTCCGAGCCGGTTGCCTGATGCGa < 1:506274/149‑1 (MQ=14) aaCGCCCAAGCCGGTTGCCTGATGCGACGCTGGCGCGT‑CTTATCAGGCCTACACCGCTGTAAAGTGCTCCACCCCGTAGGTTGGATAAGGCGGTTACGCCGCATCCGACATCCAACGTCCGAGCCgg < 2:89869/127‑1 (MQ=255) aaCGCCCAAGCCGGTTGCCTGATGCGACGCTGGCGCGT‑CTTATCAGGCCTACACCGCTGTAAAGTGCTCCACCCCGTAGGTTGGATAAGGCGGTTACGCCGCATCCGACATCCAACGTCCGAGCCgg > 1:89869/1‑127 (MQ=255) cGCCCGAGGCGGGTGCCTGAGGCGACGGTGGCGCGT‑TTTTTGATGTCTATACCGCTGTGAAGTGCGCCACCCCGTAGGTTGGATAAGGCGGTTACGCCGCATCCGACATCCAACGCCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGt < 2:336091/149‑1 (MQ=11) cAAGCCGGTTGCCTGATGCGACGCTGGCGCGT‑CTTATCAGGCCTACACCGCTGTGGAGTGCTCCACCCCGTAGGTTGGATAAGGCGGTTACGCCGCATCCGACATCCAACGCCCGAGCCGCTTGCCTGATGCGACGCTCGCGCGTCTTa > 2:90155/1‑149 (MQ=255) aaGCCGGTTGCCTGATGCGACGCTGGCGCGT‑CTTATCAGGCCTACACCGCTGTGAAGTGCTCCACCCCGTAGGTTGGATAAGGCGGTTACGCCGCATCCGACATCCAACGTCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTAt < 1:687327/149‑1 (MQ=38) cTGATGCGACGCTGGCGCGT‑CTTATCAGGCCTACACCGCTGTGAAGTGCTCCACCCCGTAGGTTGGATAAGGCGGTTACGCCGCATCCGACATCCAACGTCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTaccc > 1:390289/1‑147 (MQ=255) cTGATGCGACGCTGGCGCGT‑CTTATCAGGCCTACACCGCTGTGAAGTGCTCCACCCCGTAGGTTGGATAAGGCGGTTACGCCGCATCCGACATCCAACGTCCGAGCCGGTTGCCTGATGCGACGCTGGCACGTCTTATCAGGCCTgcac > 1:461437/1‑149 (MQ=255) tGATGCGACGCTGGCGCGT‑CTTATCAGGCCTACACCGCTGTGAAGTGCTCCACCCCGTAGGTTGGATAAGGCGGTTACGCCGCATCCGACATCCAACGTCCGAGCCGGTTACCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACAcc < 2:643672/149‑1 (MQ=255) ggCGACGGCGGCGCGG‑CTTATCCGGCCTACACCGCTGTGAAGTGCGCCACCCCGTAGGTTGGATAAGGCGGTTACGCCGCATCCGACATCCAACGTCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCt < 2:719406/148‑1 (MQ=14) cgcgccagcgT‑CGCATCAGGCCTACACCGCTGTGAAGTGCTCCACCCCGTAGGTTGGATAAGGCGGTTACGCCGCATCCGACATCCAACGTCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGaa < 2:605300/142‑1 (MQ=255) | TAGGTCGGATAAGGCGGTTACGCCGCATCCGACATCTAACGCCCAAGCCGGTTGCCTGATGCGACGCTGGCGCGT‑CTTATCAGGCCTACACCGCTGTGAAGTGCTCCACCCCGTAGGTTGGATAAGGCGGTTACGCCGCATCCGACATCCAACGTCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAA > NC_000913_3_bme_pgi/2304644‑2304856 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |