| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913_3_bme_pgi | 2304722 = | 17 (0.410) | 8 (0.200) | 6/276 | 4.8 | 21.0% | noncoding (306/655 nt) | REP161 (repetitive extragenic palindromic) element; contains 12 REP sequences | REP161 (repetitive extragenic palindromic) element; contains 12 REP sequences |
| ? | NC_000913_3_bme_pgi | = 2347232 | 44 (1.110) | noncoding (73/203 nt) | REP164 (repetitive extragenic palindromic) element; contains 5 REP sequences | REP164 (repetitive extragenic palindromic) element; contains 5 REP sequences | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
CAAGACGATCTGGTGCCGTCAATCCAGGACGATGGCTGCGAAAGCGGCGCATGTAAGATCTGATATTGAGATGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGCTCGGTTTGTAGGCCTGATAAGACGCGCC‑AGCGTCGCATCAGGCTCCGGGTGCCGGATGCAGCGTGAACGCCTTATCCGGCCTACGGCTCGGATTTGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGCACAGGATGCGGCGTAAAATGCCTTATCCGGCATTAAACTCCCAACAGGA > NC_000913_3_bme_pgi/2347088‑2347376 | caAGACGATCTGGTGCCGTCAATCCAGGACGATGGCTGCGAAAGCGGCGCATGTAAGATCTGAGATTGAGATGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGCTCGGTTTGTAGGGCTGATAAGA‑GCACCGAGCGTCGCATCa > 1:430374/1‑149 (MQ=38) aaGACGATCTGGTGCCGTCAATCCAGGACGATGGCTGCGAAAGCGGCGCATGTAAGATCTGATATTGAGATGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGCTCGGTTTGTAGGCCTGATAAGACGCGCC‑CGCGTCGCATCac > 2:162641/1‑148 (MQ=255) tccggggCCGGCAATCCTGTACGATGGCTGGAAAGGCGGCGCATGTAAGATCTTATATTGAGATGCCGGATGCAGCGTAACCGCTGTATCCGGCCTACTTCTCGGTTTGTAGGCCTGATAAGACGCGCC‑AGCGTCGCATCAGGCTCCgg < 2:267132/143‑1 (MQ=21) cTGGTGCCGTCAATCCAGGACGATGGCTGCGAAAGCGGCGCATGTAAGATCTGATATTGAGATGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGCTCGGTTTGTAGGCCTGATAAGACGCGCC‑AGCGTCGCATCAGGCTCCggg > 1:677859/1‑149 (MQ=255) cGTCAATCCAGGACGATGGCTGCGAAAGCGGCGCATGTAAGCTCTGATATTGAGATGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGCTCGGTTTGTAGGCCTGATAAGACGCGCC‑AGCGTCGCATCAGGCTCCGGGTGCCGGa < 1:342201/149‑1 (MQ=255) gTCAATCCAGGACGATGGCTGCGAAAGCGGCGCATGTAAGATCTGATATTGAGATGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGCTGGGTTTGTAGGCCTGTGAAGACCAACC‑AGCGTCGCCTCAGGCTCCGGGTCCCCGAt > 2:602574/1‑149 (MQ=37) aTCCAGGACGATGGCTGCGAAAGCGGCGCATGTAAGATCTGATATTGAGATGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGCTCGGTTTGTAGGCCTGATAAGACGCGCC‑AGCGTCGCATCAGGCTCCGGGTGCCGGATGCAg < 1:596492/149‑1 (MQ=255) aGGACGATGGCTGCGAAAGCGGCGCATGTAAGATCTGAGATTGAGGTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGCTCGGTTTGTAGGCCTGATAAGACGCGAC‑AGCGTCGCATCAGGATCCGGGTGCCGTATGCAGCGtc > 1:635066/1‑148 (MQ=25) ggACGATGGCTGCGAAAGCGGCGCATGTAAGATCTGATATTGAGATGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGCTCGGTTTGTAGGCCTGATAAGACGCGCC‑AGCGTCGCATCAGGCTCCGGGTGCCGGATGCAGCGTGa > 2:697972/1‑149 (MQ=255) aCGATGGCTGCGAAAGCCGCGCATGTAAGATCTGATATTGAGATGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGCTCGGTTTGTAGGCCTGATAAGACGCGCC‑AGCGTCGCATCAGGCTCCGGGTGCCGGATGCAGCGTGAAc < 1:146496/149‑1 (MQ=255) gATGGCTGCGAAAGCGGCGCATGTAAGATCTGATATTGAGATGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGCTCGGTTTGTAGGCCTGATCAGACGCGCC‑AGCGTCGCATCAGGCTCCGGGTGCCGGGTACAGCGTGAACGc > 2:401868/1‑149 (MQ=255) aTGGCTGCGAAAGCGGCGCATGTAAGATCTGATATTGAGATGCAGGATGCGGCGTAAACGCCTTATCCGGCCTACGGCTCGGTTTGTAGGCCTGATAAGACGCGCC‑AGCGTCGCATCAGGCTCCGGGTGCCGGATGCAGCGTGAACGcc < 2:16542/149‑1 (MQ=255) gCTGCGAAAGCGGCGCATGTAAGATCTGATATTGAGATGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGCTCGGTTTGTAGGCCTGATAAGACGCGCC‑AGCGTCGCATCAGGCTCCGGGTGCCGGATGCAGCGTGAACGCCTTa > 1:19631/1‑149 (MQ=255) cacgTAAGATCTGATCTGGAGATGCCGGATGCGGCGTAAACGCCTTATCCTGCCTACAGCTCGGTTTGTCGGCTTAATGAGACGCGCC‑GGCATCGCATCAGGCTCCGGTTGCCGGAATCACCGTGACAACCTTGCCCTGCCCACGGcgg > 2:357018/4‑147 (MQ=255) cATGTAAGATCTGATAGTGAGATGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGCTCGGTTTGTAGGCCTGATAAGACGCGCC‑AGCGTCGCATCAGGCTCCGGGTGCCGGATGCAGCGTGAACGCCTTATCCGGCCTACGGCTc < 2:598588/149‑1 (MQ=255) aaGCTCTGACATTGAGATGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGCTCGGTTTGTAGGCCTGATATGACGCGCC‑AGCGTCGCATCAGGCTCCGGGTGCCGGATGCAGCGTGAAAGCTTGTTTCGGCCTACGGCTCGGAtt < 2:558670/149‑1 (MQ=25) gATCTGATATTGAGATGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGCTCGGTTTGTAGGCCTGATAAGACGCGCC‑AGCGTCGCATCAGGCTCCGGGTGCCGGATGCAGCGTGGACGCCTTATCCGGCCTCCGGCCCGGAGTTg > 1:230935/1‑149 (MQ=255) aTCTGATATTGAGATGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGCTCGGTTTGTAGGCCTGATAAGACGCGCC‑AGCGTCGCATCAGGCTCCGGGTGCCGGATGCAGCGTGAACGCCTTATCCGGCCTACGGCTCGGATTTGt > 1:657169/1‑149 (MQ=255) aTCTGATATTGAGATGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGCTCGGTTTGTAGGCCTGATAAGACGCGCC‑AGCGTCGCATCAGGCTCCGGGTGCCGGAGGCAGCGGGAACGCCTTATCCGGCCGACGGCTCGGATTTGt > 2:590337/1‑149 (MQ=255) catatTGGGAGGCCGGATGCGGCGTAAACGCCGTATCCGGCCTACGGCTCGGTTTGTAGGCCTGATAAGACGCGCC‑CGCGTCGCATCAGGCTCCGGGTGCCGGATGCAGCGTGAACGCCTTATCCGGCCTACGGCTCGGATTTGTAGGc < 2:712050/148‑1 (MQ=255) ttGAGATGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGCTCGGTTTGTAGGCCTGATAAGACGCGCC‑AGCGTCGCATCAGGCTCCGGGTGCCGGATGCAGCGTGAACGCCTTACCCGGCCTACGGCTCGGATTTGTAGGCCTGa > 1:360493/1‑149 (MQ=255) agttggcGGAGGCGGCGTAAACGCCTTATGCGGCCTACGGCTCGGTTTGTAGGCCTGATAAGACGCGCC‑AGCGTCGCATCAGGCTTCGGGTGCCGGATGCAGCGTGAACGCCTTATCCGGCCTACGGCTCGGATTTGTAGGCCTGATaa < 2:34152/143‑1 (MQ=37) cGGATGCGGCGTAAACGCCTTATCCGGCCTACGGCTAGGTTTGTAGGCCTGATAAGACGCACC‑AGCGTCGCATTAGGCTCCGGGTGCCGGATGCAGCGTGAACGCATTATCTGGCATACCGCACGGTTTTTTAGGCCGGATAAGAcgcc > 2:151363/1‑148 (MQ=21) ggcgTATACGCCTTATCCGGCCTACGGCTCGGTTTGTAGACCTGATAAGACGCGCC‑AGCGTCGCATCAGGCACTGGGTGCCGGATGCATCGTGAACGCCTTATGCGGCCTACGTCTCGGATTTTTAGGACTGATAGTACGCGCCAGCGt > 2:677248/1‑149 (MQ=25) tAAACGCCTTATCCGGCCTACGGCTCGGTTTGTAGGCCTGATAAGACGCGCC‑AGCGTCGCATCAGGCTCCGGGTGCCGGATGCAGCGTGAACGCCTTATCCGGCCTACGGCTCGGATTTGTAGGCCTGATAAGACGCGCCAGCGTCGCa > 1:690781/1‑149 (MQ=255) aCGCCTTATCCGGCCTACGGCTCGGTTTGTAGGCCTGATAAGACGCGCC‑AGCGTCGCATCAGGCTCCGGGTGCCGGATGCAGCGGCAACGCCTTATCCGGCCTCCGGCTCGGATTTGTTATCCTGATATAACGACCCAGCGTCGCATcc > 2:165221/1‑148 (MQ=25) cGCCTTATCCGGCCTACGGCTCGGTTTGTAGGCCTGATAAGACGCGCC‑AGCGTCGCATCAGGCTCCGGGTGCCGGATGCAGCGTGAACGCCTTATCCGGCCTACGGCTCGGATTTGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAg < 1:188001/149‑1 (MQ=255) ccTTACCCGGCCTACGGCTCGGTTTGTAGGCCTGATAAGACGCGCC‑AGCGTCGCATCAGGCTCCGGGTGCCGGATGCAGCGTGAGCGCCTTATCCGGCCTACGGCTCGGATTTGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGc < 1:246661/149‑1 (MQ=255) cTTATCCGGCCTACGGCTCGGTTTGTAGGCCTGATAAGACGCGCC‑AGCGTCGCATCAGGCTCCGGGTGCCGGGTGCAGCGTGAACGCCTTATCCGGCCTACGGCTCGGATTTGTAGGCCTGATAAGACGCGCCAGCGTCCCATCAGGca > 2:306367/1‑149 (MQ=255) cTTATCCGGCCTACGGCTCGGTTTGTAGGCCTGATAAGACGCGCC‑AGCGTCGCATCAGGCTCCGGGTGCCGGATGCAGCGTGAACGCCTTATCCGGCCTACGGCTCGGATTTGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGca > 2:291295/1‑149 (MQ=255) cTACGGCTCGGTTTGTAGGCCTGATAAGACGCGCC‑AGCGTCGCATCAGGCTCCGGGTGCCGGATGCAGCGTGAACGCCTTATCCGGCCTACGGCTCGGATTTGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGCACAGGATgcgg < 1:266077/149‑1 (MQ=255) ggCTCGGTTTGTAGGCCTGATAAGACGCGCC‑AGCGTCGCATCAGGCTCCGGGTGCCGGATGCAGCGTGAACGCCTTATCCGGCCTACGGCTCGGATTTGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGCACAGGATGCGGCGTa > 1:492958/1‑149 (MQ=255) ggCTCGGTTTGTAGGCCTGATAAGACGCGCC‑AGCGTCGCATCAGGCTCCGGGTGCCGGATGCAGCGTGAACGCCTTATCCGGCCTACGGCTCGGATTTGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGCACAGGAGgcggcgga > 1:206331/1‑147 (MQ=255) tCGGTTTGTAGGCCTGATAAGACGCGCC‑AGCGTCGCATCAGGCTCCGGGTGCCGGATGCAGCGTGAACGCCTTATCCGGCCTACGGCTCGGATTTGTAGGCCTGATAAGACGCGCCAGCg < 2:595545/120‑1 (MQ=255) tCGGTTTGTAGGCCTGATAAGACGCGCC‑AGCGTCGCATCAGGCTCCGGGTGCCGGATGCAGCGTGAACGCCTTATCCGGCCTACGGCTCGGATTTGTAGGCCTGATAAGACGCGCCAGCg > 1:595545/1‑120 (MQ=255) gTTTGTAGGCCTGATAAGACGCGCC‑AGCGTCGCATCAGGCTCCGGGTGCCGGATGCAGCGTGAACGCCTTATCCGGCCTACGGCTCGGATTTGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGCACAGGATGCGGCGTAAAATGc < 2:657169/149‑1 (MQ=255) gCCTGATAAGACGCGCC‑AGCGTCGCATCAGGCTCCGGGTGCCGGATGCAGCGTGAACGCCTTATCCGGCCTACGGCTCGGATTTGTAGGCCTGATAAGACGCGCCAGCGTCGCCTCAGGCACAGGATGCGGCGTAAAATGCCTTATCCg > 2:618138/1‑149 (MQ=255) gCCTGATAAGACGCGCC‑AGCGTCGCATCAGGCTCCGGGTGCCGGATGCAGCGTGAACGCCTTATCCGGCCTACGGCTCGGATTTGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGCACAGGATGCGGCGTAAAATGCCTTATCCg < 1:545801/149‑1 (MQ=255) tGATAAGACGCGCC‑AGCGTCGCATCAGGCTCCGGGTGCCGGATGCAGCGTGAACGCCTTATCCGGCCTACGGCTCGGATTTGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGCACAGGATGCGGCGTAAAATGCCTTATCCGGCa > 2:160182/1‑149 (MQ=255) tGATAAGACGCGCC‑AGCGTCGCATCAGGCTCCGGGTGCCGGATGCAGCGTGAACGCCTTATCCGGCCTACGGCTCGGATTTGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGCACAGGATGCGGCGTAAAATGCCTTATCCGGCa > 2:160397/1‑149 (MQ=255) tGATAAGACGCGCC‑AGCGTCGCATCAGGCTCCGGGTGCCGGATGCAGCGTGAACGCCTTATCCGGCCTACGGCTCGGATTTGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGCACAGGATGCGGCGTAAAATGCCTTATCCGGCa > 2:160193/1‑149 (MQ=255) aGACGCGCC‑AGCGTCGCATCAGGCTCCGGGTGCCGGATGCAGCGTGAACGCCTTATCCGGCCTACGGCTCGGATTTGTAGGCCTGATAAGACGCGCCAGCGTCGCCTCAGGCACAGGATGCGGCGTAAAATGCCTTATCCGGCATTaaa < 1:185424/149‑1 (MQ=255) gcgcC‑AGCGTCGCATCAGGCTCCGGGTGCCGGATGCAGCGTGAACGCCTTATCCGGCCTACGGCTCGGATTTGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGCACAGGATGCGGCGTAAAATGCCTTATCCGGCATTAAACTcc < 2:518507/149‑1 (MQ=255) cc‑AGCGTCGCATCAGGCGCCGGGTGCCGGATGCAGCGTGAACGCCTTATCCGGCCTACGGCTCGGATTTGTAGGCCTGATAAGAGGCGCCAGCGTCGCATCAGGCACAGGATGCGGCGTAAAATGCCTTATCCGGCATTAAACTCCCaa < 1:637101/149‑1 (MQ=255) ccggCGTCGCATCAGGCTCCGGGTGCCGGAGGCAGCGTTAACGCATTATAACGTGGACGGTTCGGATTTGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGGACAGGATGCGGCGTAAAATGCCTTATCCGGCATTAAACTCCCaa < 1:572283/146‑1 (MQ=37) gTCGCATCAGGCTCCGGGTGCCGGATGCAGCGTGAACGCCTTATCCGGCCTACGGCTCGGATTTGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGCACAGGATGCGGCGTAAAATGCCTTATCCGGCATTAAACTCCCAACAGGa < 1:697972/149‑1 (MQ=255) | CAAGACGATCTGGTGCCGTCAATCCAGGACGATGGCTGCGAAAGCGGCGCATGTAAGATCTGATATTGAGATGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGCTCGGTTTGTAGGCCTGATAAGACGCGCC‑AGCGTCGCATCAGGCTCCGGGTGCCGGATGCAGCGTGAACGCCTTATCCGGCCTACGGCTCGGATTTGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGCACAGGATGCGGCGTAAAATGCCTTATCCGGCATTAAACTCCCAACAGGA > NC_000913_3_bme_pgi/2347088‑2347376 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |