mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913_3_bme_pgi | 4,296,061 | 0 | C | T | 29.0% | 95.2 / 40.9 | 71 | intergenic (+266/+376) | gltP/yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| * | NC_000913_3_bme_pgi | 526,796 | 0 | C | G | 21.3% | 116.8 / 31.2 | 62 | A1179G (GCG→GGG) | rhsD | Rhs protein with DUF4329 family putative toxin domain; putative neighboring cell growth inhibitor |
| * | NC_000913_3_bme_pgi | 526,792 | 0 | A | C | 21.0% | 89.8 / 24.0 | 65 | S1178R (AGC→CGC) | rhsD | Rhs protein with DUF4329 family putative toxin domain; putative neighboring cell growth inhibitor |
| Marginal new junction evidence (lowest skew 10 of 166 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913_3_bme_pgi | = 2662574 | NA (NA) | 8 (0.270) +49 bp |
4/188 | 4.3 | NA | noncoding (266/266 nt) | REP184 (repetitive extragenic palindromic) element; contains 6 REP sequences | REP184 (repetitive extragenic palindromic) element; contains 6 REP sequences |
| ? | NC_000913_3_bme_pgi | = 2662583 | NA (NA) | coding (741/741 nt) | trmJ | tRNA mC32,mU32 2'‑O‑methyltransferase, SAM‑dependent | |||||
| * | ? | NC_000913_3_bme_pgi | = 2662483 | 49 (1.090) | 8 (0.270) +49 bp |
4/188 | 4.3 | 20.0% | noncoding (175/266 nt) | REP184 (repetitive extragenic palindromic) element; contains 6 REP sequences | REP184 (repetitive extragenic palindromic) element; contains 6 REP sequences |
| ? | NC_000913_3_bme_pgi | = 2662583 | NA (NA) | coding (741/741 nt) | trmJ | tRNA mC32,mU32 2'‑O‑methyltransferase, SAM‑dependent | |||||
| * | ? | NC_000913_3_bme_pgi | = 2662392 | 61 (1.360) | 8 (0.270) +49 bp |
4/188 | 4.3 | 16.7% | noncoding (84/266 nt) | REP184 (repetitive extragenic palindromic) element; contains 6 REP sequences | REP184 (repetitive extragenic palindromic) element; contains 6 REP sequences |
| ? | NC_000913_3_bme_pgi | = 2662583 | NA (NA) | coding (741/741 nt) | trmJ | tRNA mC32,mU32 2'‑O‑methyltransferase, SAM‑dependent | |||||
| * | ? | NC_000913_3_bme_pgi | 3853662 = | NA (NA) | 6 (0.150) | 6/262 | 4.9 | NA | intergenic (+20/‑260) | tisB/emrD | toxic membrane persister formation peptide, LexA‑regulated/multidrug efflux system protein |
| ? | NC_000913_3_bme_pgi | 3853690 = | NA (NA) | intergenic (+48/‑232) | tisB/emrD | toxic membrane persister formation peptide, LexA‑regulated/multidrug efflux system protein | |||||
| * | ? | NC_000913_3_bme_pgi | = 4168341 | 33 (0.740) | 6 (0.140) | 6/266 | 5.0 | 17.7% | intergenic (+141/‑31) | rrsB/gltT | 16S ribosomal RNA of rrnB operon/tRNA‑Glu |
| ? | NC_000913_3_bme_pgi | = 4168363 | 25 (0.600) | intergenic (+163/‑9) | rrsB/gltT | 16S ribosomal RNA of rrnB operon/tRNA‑Glu | |||||
| * | ? | NC_000913_3_bme_pgi | = 3944978 | NA (NA) | 6 (0.140) | 6/274 | 5.1 | 28.1% | noncoding (1275/2904 nt) | rrlC | 23S ribosomal RNA of rrnC operon |
| ? | NC_000913_3_bme_pgi | = 4038811 | 16 (0.360) | noncoding (1293/2905 nt) | rrlA | 23S ribosomal RNA of rrnA operon | |||||
| * | ? | NC_000913_3_bme_pgi | 2727891 = | NA (NA) | 6 (0.140) | 6/274 | 5.1 | NA | noncoding (1294/2904 nt) | rrlG | 23S ribosomal RNA of rrnG operon |
| ? | NC_000913_3_bme_pgi | 2727910 = | NA (NA) | noncoding (1275/2904 nt) | rrlG | 23S ribosomal RNA of rrnG operon | |||||
| * | ? | NC_000913_3_bme_pgi | = 227052 | 25 (0.560) | 7 (0.160) | 6/274 | 5.1 | 22.6% | noncoding (1294/2904 nt) | rrlH | 23S ribosomal RNA of rrnH operon |
| ? | NC_000913_3_bme_pgi | 2727910 = | NA (NA) | noncoding (1275/2904 nt) | rrlG | 23S ribosomal RNA of rrnG operon | |||||
| * | ? | NC_000913_3_bme_pgi | = 1207805 | 62 (1.380) | 5 (0.130) | 5/254 | 5.2 | 10.2% | coding (305/630 nt) | stfP | e14 prophage; uncharacterized protein |
| ? | NC_000913_3_bme_pgi | = 1209602 | 33 (0.830) | pseudogene (18/501 nt) | stfE | pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related | |||||
| * | ? | NC_000913_3_bme_pgi | 2729443 = | 17 (0.380) | 5 (0.120) | 5/266 | 5.4 | 18.2% | noncoding (2/76 nt) | gltW | tRNA‑Glu |
| ? | NC_000913_3_bme_pgi | = 4168331 | 29 (0.700) | intergenic (+131/‑41) | rrsB/gltT | 16S ribosomal RNA of rrnB operon/tRNA‑Glu | |||||