New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913_3_bme_pgi	4245134 =	NA (NA)	11 (0.260)	9/272	3.6	2.8%	noncoding (42/126 nt)	REP315 (repetitive extragenic palindromic) element; contains 3 REP sequences	REP315 (repetitive extragenic palindromic) element; contains 3 REP sequences
	?	NC_000913_3_bme_pgi	4245166 =	387 (9.140)					noncoding (74/126 nt)	REP315 (repetitive extragenic palindromic) element; contains 3 REP sequences	REP315 (repetitive extragenic palindromic) element; contains 3 REP sequences
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

GCGGTCGTCAGACTGTCGATGAAGCCCTGAAAGACGCGCAGACTCGTATCACCAAGTAATGCTGTGAAATGCCGGATGCGGCGTGAACGCCTTGTCCGGCCTACAAAACCGAAACGTATGTAGGCCTGATAAGACGCGTCAGCGTCGCATCAGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913_3_bme_pgi/4245288‑4245134 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atcaggcCTACATACGTTTCGGTTTTGTAGGCCGGACAAGGCGTTCACGCCGCATCCGGCATTTCACAGCATTACTTGGTGATACGAGTCTGCGCGTCTTTCAGGGCTTCATCGACAGTCTGACGACCGCTGGCGGCGTTGATCACCGCAGTAC  >  NC_000913_3_bme_pgi/4245166‑4245312                                                                                                                                                                                                                                                                                                                GCGGTCGTCAGACTGTCGATGAAGCCCTGAAAGACGCGCAGACTCGTATCACCAAGTAATGCTGTGAAATGCCGGATGCGGCGTGAACGCCTTGTCCGGCCTACAAAACCGAAACGTATGTAGGCCTGATAAGACGCGTCAGCGTCGCA                                                                                                                                                           >  1:16633/1‑149  CGGTCGTCAGACTGTCGATGAAGCCCTGAAAGACGCGCAGACTCGTATCACCAAGTAATGCTGTGAAATGCCGGATGCGGCGTGAACGCCTTGTCCGGCCTACAAAACCGAAACGTATGTAGGCCTGATAAGACGCGTCAGCGTCGCAT                                                                                                                                                          <  1:439897/149‑1    GTCGTCAGACTGTCGATGAAGCCCTGAAAGACGCGCAGACTCGTATCACCAAGTAATGCTGTGAAATGCCGGATGCGGCGTGAACGCCTTGTCCGGCCTACAAAACCTAACCGTATGTAGGCCTGATAAGACGCGTCAGCGTCGCATCA                                                                                                                                                        <  1:495518/149‑1    GTCGTCAGACTGTCGATGAAGCCCTGAAAGACGCGCAGACTCGTATCACCAAGTAATGCTGTGAAATGCCGGATGCGGCGTGAACGCCTTGTCCGGCCTACAAAACCGAAACGTATGTAGGCCTGATAAGACGCGTCAGCGTCGCATCA                                                                                                                                                        <  1:436485/149‑1     TCGTCAGACTGTCGATGAAGCCCTGAAAGACGCGCAGACTCGTATCACCAAGTAATGCTGTGAAATGCCGGATGCGGCGTGAACGCCTTGTCCGGCCTACAAAACCGAAACGTATGTAGGCCTGATAAGACGCGTCAGCGTCGCATCAG                                                                                                                                                       >  1:521378/1‑149       GTCAGACTGTCGATGAAGCCCTGAAAGACGCGCAGACTCGTATCACCAAGTAATGCTGTGAAATGCCGGATGCGGCGTGAACGCCTTGTCCGGCCTACAAAACCGAAACGTATGTAGGCCTGATAAGACGCGTCAGCGTCGCATCGGGC                                                                                                                                                     >  1:168209/1‑149       GTCAGACTGTCGATGAAGCCCTGAAAGACGCGCAGACTCGTATCACCAAGTAATGCTGTGAAATGCCGGATGCGGCGTGAACGCCTTGTCCGGCCTACAAAACCGAAACGTATGTAGGCCTGATAAGACGCGTCAGCGTCGCATCAGGC                                                                                                                                                     >  2:623888/1‑149       GTCAGACTGTCGATGAAGCCCTGAAAGACGCGCAGACTCGTATCACCAAGTAATGCTGTGAAATGCCGGATGCGGCGTGAACGCCTTGTCCGGCCTACAAAACCAAAACGTATGTAGGCCTGATAAGACGCGTCCGCGTCGCATCAGGC                                                                                                                                                     >  2:467243/1‑149        TCAGACTGTCGATGAAGCCCTGAAAGACGCGCAGACTCGTATCACCAAGTAATGCTGTGAAATGCCGGATGCGGCGTGAACGCCTTGTCCGGCCTACAAAACCGAAACGTATGTAGGCCTGATAAGACGCGTCAGCGTCGCATC                                                                                                                                                         >  2:652193/1‑144        TCAGACTGTCGATGAAGCCCTGAAAGACGCGCAGACTCGTATCACCAAGTAATGCTGTGAAATGCCGGATGCGGCGTGAACGCCTTGTCCGGCCTACAAAACCGAAACGTATGTAGGCCTGATAAGACGCGTCAGCGTCGCATC                                                                                                                                                         <  1:652193/144‑1                            TGAAAGACGCGCAGACTCGTATCACCAAGTAATGCTGTGAAATGCCGGATGCGGCGTGAACGCCTTGTCCGGCCTACAAAACCGAAACGTATGTAGGCCTGATAAGACGCGTCAGCGTCGCATCAGG                                                                                                                                                      >  2:465917/1‑127                            TGAAAGACGCGCAGACTCGTATCACCAAGTAATGCTGTGAAATGCCGGATGCGGCGTGAACGCCTTGTCCGGCCTACAAAACCGAAACGTATGTAGGCCTGATAAGACGCGTCAGCGTCGCATCAGG                                                                                                                                                      <  1:465917/127‑1                            TGAAAGACGCGCAGACTCGTATCACCAAGTAATGCTGTGAAATGCCGGATGCGGCGTGAACGCCTTGTCCGGCCTACAAAACCGAAACGTATGTAGGCCTGATAAGACGCGTCAGCGTCGCA                                                                                                                                                           >  2:655841/1‑122                            TGAAAGACGCGCAGACTCGTATCACCAAGTAATGCTGTGAAATGCCGGATGCGGCGTGAACGCCTTGTCCGGCCTACAAAACCGAAACGTATGTAGGCCTGATAAGACGCGTCAGCGTCGCA                                                                                                                                                           <  1:655841/122‑1                                                    CCAAGTAATGCTGTGAAATGCCGGATGCGGCGTGAACGCCTTGTCCGGCCTACAAAACCGAAACGTATGTAGGCCTGATAAGACGCGTCAGCGTCGCA                                                                                                                                                           >  1:342629/1‑98                                                    CCAAGTAATGCTGTGAAATGCCGGATGCGGCGTGAACGCCTTGTCCGGCCTACAAAACCGAAACGTATGTAGGCCTGATAAGACGCGTCAGCGTCGCA                                                                                                                                                           <  2:342629/98‑1                                                                                                          AAACCGAAACGTATGTAGGCCTGATAAGACGCGTCAGCGTCGCATCAGGCCTACATACGTTTCGGTTTTGTAGGCCGGACAAGGCGTTCACGCCGCATCCGGCATTTCACAGCATTACTTGGTGATACGAGTCTGCGCGGCTTTCAGGG                                                  >  1:250549/1‑149                                                                                                                AAACGTATGTAGGCCTGATAAGACGCGTCAGCGTCGCATCAGGCCTACATACGTTTCGGTTTTGTAGGCCGGACAAGGCGTTCACGCCGCATCCGGCATTTCACAGCATTACTTGGTGATACGAGTCTGCGCGTCTTTCAGGGCTTCAT                                            >  1:518049/1‑149                                                                                                                             CCTGATAAGACGCGTCAGCGTCGCATCAGGCCTACATACGTTTCGGTTTTGTAGGCCGGACAAGGCGTTCACGCCGCATCCGGCATTTCACAGCATTACTTGGTGATACGAGTCTGCGCGTCTTTCAGCGCTTCATCGACAGCCTGCCG                               >  2:53545/1‑149                                                                                                                                GATAAGACGCGTCAGCGTCTTATCAGGCCTACATACGTTTCGGTTTTGTAGGCCGGACAAGGCGTTCACGCCGCATCCGGCATTTCACAGCATTACTTGGT                                                                            <  1:3334/101‑1                                                                                                                                GATAAGACGCGTCAGCGTCTTATCAGGCCTACATACGTTTCGGTTTTGTAGGCCGGACAAGGCGTTCACGCCGCATCCGGCATTTCACAGCATTACTTGGT                                                                            >  2:3334/1‑101                                                                                                                                GATAAGACGCGTCAGCGTCGCATCAGGCCTACATACGTTTCGGTTTTGTAGGCCGGACAAGGCGTTCACGCCGCATCCGGCATTTCACA                                                                                        <  1:561148/89‑1                                                                                                                                GATAAGACGCGTCAGCGTCGCATCAGGCCTACATACGTTTCGGTTTTGTAGGCCGGACAAGGCGTTCACGCCGCATCCGGCATTTCACA                                                                                        >  2:561148/1‑89                                                                                                                                 ATAAGACGCGTCAGCGTCGCATCAGGCCTACATACGTTTCGGTTTTGTAGGCCGGACAAGGCGTTCACGCCGCATCCGGCATTTCACAGCATTACTTGGTGATACGAGTCTGCGCGTCTTTCAGGGCTTCATCGACAGTCTGACGACCG                           >  1:77604/1‑149                                                                                                                                           TCAGCGTCGCATCAGGCCTACATACGTTTCGGTTTTGTAGGCCGGACAAGGCGTTCACGCCGCATCCGGCATTTCACAGCATTACTTGGTGATACGAGTCTGCGCGTCTTTCAGGGCTTCATCGACAGTCTGACGACCGCTGGCGGCGT                 <  2:518049/149‑1                                                                                                                                              GCGTCGTATCAGGCCCACCTACGTTTCGGTTTTGTAGGCCGGACAGGGCGTCCACGCCGCATCCGGCATTTCAAAGCATTACTTTGTGATACGAGTCGGCGCGTCTTCCAGGGCTTCATCGACAGTCTGACGACCGCTGGCGGCGTTGA              <  2:423373/149‑1                                                                                                                                                    tcTCAGGCCTACATACGTTTCGGTTTTGTAGGCCGGACAAGGCGTTCACGCCGCATCCGGCATTTCACAGCATTACTTGGTGATACGAGTCTGCGCGTCTTTCAGGGCTTCATCGACAGTCTGACGACCGCTGGCGGCGTTGAGCACCG        <  1:674538/147‑1                                                                                                                                                    CATCAGGCCTACATACGTTTCGGTTTTGTAGGCCGGTCAAGGCGTTCACGCCGCATCCGGCATTTCACAGCATTACTTGGTGATACGAGTCTGCGCGTCTTTCTGGTCTTCATCGATAGTCTGACCACCGCTGGCGGCGTTGATCACCG        <  1:610658/149‑1                                                                                                                                                      TCAGGCCTACATACGTTTCGGTTTTGTAGGCCGGACAAGGCGTTCACGCCGCATCCGGCATTTCACAGCATTACTTGGTGATACGAGTCTGCGCGTCTTTCAGGGCTTCATCGACAGTCTGACGACCGCTGGCGGCGTTGATCACCGCA      <  1:211117/149‑1                                                                                                                                                        AGGCCTACATACGTTTCGGTTTTGTAGGCCGGACAAGGCGTTCACGCCGCATCCGGCATTTCACAGCATTACTTGGTGATACGAGTCTGCGCGTCTTTCAGGGCTTCATCGACCGTCTGACGGCCGCTGCCGGCGGTGATCACCGCAct    >  2:180594/1‑147                                                                                                                                                        AGGCCTACATACGTTTCGGTTTTGTAGGCCGGACAAGGCGTTCACGCCGCATCCGGCATTTCACAGCATTACTTGGTGATACGAGTCTGCGCGTCTTTCAGGGCTTCATCGACAGTCTGACGACCGCTGGCGGCGTTGATCACCGCAGT    >  1:127822/1‑149                                                                                                                                                         GGCCTACATACGTTTCGGTTTTGTAGGCCGGACAAGGCGTTCACGCCGCATCCGGCATTTCACAGCATTACTTGGTGATACGAGTCTGCGCGTCTTTCAGGGCTTCATCGACAGTCTGACGACCGCTGGCGGCGTTGATCACCGCAGTA   <  2:257205/149‑1                                                                                                                                                          GCCTACATACGTTTCGGTTTTGTAGGCCGGACAAGGCGTTCACGCCGCATCCGGCATTTCACAGCATTACTTGGTGATACGAGTCTGCGCGTCTTTCAGGGCTTCATCGACAGTCTGACGACCGCTGGCGGCGTTGATCACCGCAGTAC  >  1:482907/1‑149                                                                                                                                                          GCCTACATACGTTTCGGTTTTGTAGGCCGGACAAGGCGTTCACGCCGCATCCGGCATTTCACAGCATTACTTGGTGATACGAGTCTGCGCGTCTTTCAGGGCTTCATCGACAGTCTGACGACCGCTGGCGGCGTTGATCACCGCAGTAC  >  1:261751/1‑149                                                                                                                                                          GCCTACATACGTTTCGGTTTTGTAGGCCGGACAAGGCGTTCACGCCGCATCCGGCATTTCACAGCATTACTTGGTGATACGAGTCTGCGCGTCTTTCAGGGCTTCATCGACAGTCTGACGACCGCTGGCGGCGTTGATCACCGCAGTAC  <  1:187710/149‑1                                                                                                                                                          GCCTACATACGTTTCGGTTTTGTAGGCCGGACAAGGCGTTCACGCCGCATCCGGCATTTCACAGCATTACTTGGTGATACGAGTCTGCGCGTCTTTCAGGGCTTCATCGACAGTCTGACGACCGCTGGCGGCGTTGATCACCGCAGTAC  >  1:172357/1‑149                                                                                                                                                          GCCTACATACGTTTCGGTTTTGTAGGCCGGACAAGGCGTTCACGCCGCATCCGGCATTTCACAGCATTACTTGGTGATACGAGTCTGCGCGTCTTTCAGGGCTTCATCGACAGTCTGACGACCGCTGGCGGCGTTGATCACCGCAGTAC  <  1:390282/149‑1                                                                                                                                                          GCCTACATACGTTTCGGTTTTGTAGGCCGGACAAGGCGTTCACGCCGCATCCGGCATTTCACAGCATTACTTGGTG                                                                           <  1:645183/76‑1                                                                                                                                                          GCCTACATACGTTTCGGTTTTGTAGGCCGGACAAGGCGTTCACGCCGCATCCGGCATTTCACAGCATTACTTGGTG                                                                           >  2:645183/1‑76                                                                                                                                                          GCCTACATACGTTTCGGTTTTGTAGGCCGGACAAGGCGTTCACGCCGCATCAGGCATTGGACAGCATTACTTGGTGATACGAGTCTGCGCGTCTTTCAGGGCTTCATCGACAGTCTGACGACCGCTGGCGGCGTTGATCACCGCAGTAC  >  1:727174/1‑149                                                                                                                                                                                                                                                                                                                GCGGTCGTCAGACTGTCGATGAAGCCCTGAAAGACGCGCAGACTCGTATCACCAAGTAATGCTGTGAAATGCCGGATGCGGCGTGAACGCCTTGTCCGGCCTACAAAACCGAAACGTATGTAGGCCTGATAAGACGCGTCAGCGTCGCATCAGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913_3_bme_pgi/4245288‑4245134 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atcaggcCTACATACGTTTCGGTTTTGTAGGCCGGACAAGGCGTTCACGCCGCATCCGGCATTTCACAGCATTACTTGGTGATACGAGTCTGCGCGTCTTTCAGGGCTTCATCGACAGTCTGACGACCGCTGGCGGCGTTGATCACCGCAGTAC  >  NC_000913_3_bme_pgi/4245166‑4245312

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.