New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913_3_bme_pgi	= 3150670	45 (0.630)	5 (0.070)	5/270	10.5	10.0%	noncoding (117/255 nt)	RIP222 (repetitive extragenic palindromic) element; contains 5 REP sequences and 2 IHF sites	RIP222 (repetitive extragenic palindromic) element; contains 5 REP sequences and 2 IHF sites
	?	NC_000913_3_bme_pgi	= 3150808	NA (NA)					noncoding (255/255 nt)	RIP222 (repetitive extragenic palindromic) element; contains 5 REP sequences and 2 IHF sites	RIP222 (repetitive extragenic palindromic) element; contains 5 REP sequences and 2 IHF sites
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

GGCGGCGAGCATTTAGGTTAAAAAAATGCCCGGTTGTGAAAAGCAACCGGGCATCATTGTGAATTCACTCTTACCTGATGTGGCGAAAACGCCTTATCCGCCTACAAACGCATGAAGATTCAACATGTTGCAATAGATTTTGTAGGCCTGATAAGCGTAGCGCATCAGGCATTGAGCACCTAATGCCGGATGCGTCGTGAACGCCTTATCCGGCCTACAAACGCACGAAGATTCAACATGTTGCAATAGATTTTGTAGGCCTGATGAGCGTAGCGCATCAGGCAATTCTACT  >  NC_000913_3_bme_pgi/3150526‑3150817                                                                                                                                                 |                                                                                                                                                    ggcggcgAGCATTTAGGTTAAAACAATGCCCGGTTGTGAAAAGCAACCGGGCATCATTGTGAATTCACTCTTACCTGATGTGGCGAAAACGGCTTATCCGCATACAAACGCATGAAGATTCAACATGTTGCAATAGATTTTGTAGGCCt                                                                                                                                                 <  2:772847/149‑1 (MQ=255)                  ttAAAAAAATGCCCGGTTGTGAAAAGCAACCGGGCATCATTGTGACTTCACTCTTACCTGATGTAGCGCAAACCCCTTATCCGCCTACAAACGCATGAACATTCAACATGTTGCAACAGATTTTGTAGTCCTGATAAGAGTAGCGCCTc                                                                                                                                >  2:117431/1‑149 (MQ=255)                  ttAAAAAAATGCCCGGTTGTGAAAAGCAACCGGGCATCATTGTGAATTCACTCTTACCTGATGTGGCGAAAACGCCTTATCCGCCTACAAACGCATGAAGATTCAACATGTTGCAATAGATTTTGTAGGCCTGATAAGCGTAGCGCATc                                                                                                                                >  1:946329/1‑149 (MQ=255)                     aaaaaaTGCCCGGTTGCGAAAAGCAACCGGGCATCATTGTGAATTCACTCTTACCTGATGTGGCGAAAACGCCTTATCCGCCTACAAACGCATGAAGATTCAACATGTTGCAATAGATTTTGTAGGCCTGATAAGCGTAGCGCATCAgg                                                                                                                             <  1:523459/149‑1 (MQ=255)                         taggCCCGGTTGTGCAAAGCGACCGGGCATCCTTGTGAATTCACTCTTCCCCGATGTGGCGAAAACGCCTTATCCGCCTACAAACGCATGAAGATTCAACATGTTGCAATAGATTTAGGAGGTCTGATAAGCGTAGCGCATCAGGCAtt                                                                                                                         <  1:654092/146‑1 (MQ=25)                             cccGGTAGTGAAAAGCAACCGTGCATCATTGTGAATTCACTCTTACCTGATGTGGCGAAAACGCCTTATCCGCCTACAAACGCATGAAGATTCAACATGTTGCAATAGATTTTGTAGGCCTGATAAGCGTAGCGCATCAGGCATTGAGc                                                                                                                     <  1:835424/149‑1 (MQ=255)                                 gTTGTGAAAAGCAACCGGGCATCATTGTGAATTCACTCTTACCTGATGTGGCGAAAACGCCTTATCCGCCTACAAACGCATGAAGATTCAACATGTTGCAATAGATTTTGTAGGCCTGATAAGCGTAGCGCATCAGGCATTGAGCACCt                                                                                                                 >  2:765295/1‑149 (MQ=255)                                   tgtgAAAAGCAACCGGGCATCATTGTGAATTCACTCTTACCTGATGTGGCGAAAACGCCTTATCCGCCTACAAACGCATGAAGATTCAACATGTTGCAATAGATTTTGTAGGCCTGATAAGCGTAGCGCATCAGGCATTGAGCACCTaa                                                                                                               <  2:990859/149‑1 (MQ=255)                                       aaaaGCAACCGGGCATCATTGTGAATTCACTCTTACCTGATGTGGCGAAAACGCCTTATCCGCCTACAAACGCATGAAGATTCAACATGTTGCAATAGATTTTGTAGGCCTGATAAGCGTAGCGCATCAGGCATTGAGCACCTAATGcc                                                                                                           >  1:701665/1‑149 (MQ=255)                                        aaaGCAACCGGGCATCATTGTGAATTCACTCTTACCTGATGTGGCGAAAACGCCTTATCCGCCTACAAACGCATGAAGATTCAACATGTTGCAATAGATTTTGTAGGCCTGATAAGCGTAGCGCATCAGGCATTGAGCACCTAATGCCg                                                                                                          <  2:1308733/149‑1 (MQ=255)                                         aaGCAACCGGGCATCATTGTGAATTCACTCTTACCTGATGTGGCGAAAACGCCTTATCCGCCTACAAACGCATGAAGATTCAACATGTTGCAATAGATTTTGTAGGCCTGATAAGCGTAGCGCATCAGGCATTGAGCACCTAATGCCgg                                                                                                         >  2:568892/1‑149 (MQ=255)                                          ggCAACCGGGCATTAGTGTGAATTCACTCTTAGCTGATGGGGCGAAAACGCCTTATCCGCCTACAAACGCATGAAGATTCAACATGTTGCAATAGATTTTGTAGGCCTGATAAGCGTAGCGCATCAGGCATTGAGCACCTAATGCCGGa                                                                                                        <  2:544021/148‑1 (MQ=255)                                                cGGGCATCCGTGTGAGTTCACTCTTACCTGAGGTGGCGAAAACGTCTTATCCGCCTACAAACGCATGAAGATTCAACATGTTGCAATAGATTTTGTAGGCCTGATAAGCGTAGCGCATCAGGCATTGAGCACCTAATGCCGGATGcgtc                                                                                                  <  2:644351/149‑1 (MQ=25)                                                cGGGCATCATTTTGAATTCACTCTTACCTGATGTGGCGAAATCGCCTTATCCGCCTACAAACGCATGAAGATTCAACATGTTGCAATAGATTTTGTAGGCCTGATAAGCGTAGCGCATCAGGCATTGAGCACCTAATGCCGGATGcgtc                                                                                                  <  1:1188723/149‑1 (MQ=255)                                                  ggCATCATTGTGAATTCACTCTTACCTGATGTGGCGAAAACGCCTTATCCGCCTACAAACGCATGAAGATTCAACATGTTGCAATAGATTTTGTAGGCCTGATAAGCGTAGCGCATCAGGCATTGAGCACCTAATGCCGGATGcgtcgt                                                                                                <  1:480711/149‑1 (MQ=255)                                                  ggCATCATTGTGAATTCACTCTTACCTGATGTGGCGAAAACGCCTTATCCGCCTACAAACGCATGAAGATTCAACATGTTGCAATAGATTTTGTAGGCCTGATAAGCGTAGCGCATCAGGCATTGAGCACCTAATGCCGGATGcgtcgt                                                                                                >  1:703116/1‑149 (MQ=255)                                                      tcatTGTGAATTCACTCTTACCTGATGTGGCGAAAACGCCTTATCCGCCTACAAACGCATGAAGATTCAACATGTTGCAATAGATTTTGTAGGCCTGATAAGCGTAGCGCATCAGGCATTGAGCACCTAATGCCGGATGCGTCGTGAAc                                                                                            <  2:895390/149‑1 (MQ=255)                                                      tcatTGTGAATTCACTCGTGCCTGATGTGGCGAAAACGCCTGAGCCGCCTACAAACGCATGAAGATTCAACATGTTGCAATAGATTTTGTAGGCCGGATAAGCGTAGCGCATCAGGCATTGAGCACCTAATGCCGGATGCGTCGTGAAc                                                                                            <  1:946168/149‑1 (MQ=37)                                                        atTGTGAATTCACTCTTACCTGATGTGGCGAAAACGCCTTATCCGCCTACAAACGCATGAAGATTCAACATGTTGCAATAGATTTTGTAGGCCTGATAAGCGTAGCGCATCAGGCATTTAGCACCTAATGCCGGATGCGTCGTGAACGc                                                                                          <  1:534016/149‑1 (MQ=255)                                                        atTGTGAATTCACTCTTACCTGATGTGGCGAAAACGCCTTATCCGCCTACAAACGCATGAAGATTCAACATGTTGCAATAGATTTTGTAGGCCTGATAAGCGTAGCGCATCAGGCATTGAGCACCTAATGCCGGATGCGTCGTGAACGc                                                                                          <  1:897329/149‑1 (MQ=255)                                                           gtgAATTCACTCTTACCTGATGTGGCGAAAACGAGTGTTCCGCCTACAAACGCATGAAGATTCAACATGTTGCAATAGATTTTGTAGGCCTGATAAGCGTAGCGCATCAGGCATTGAGCACCTAATGCCGGATGCGTCGTGAACGCCtt                                                                                       >  1:318378/1‑149 (MQ=255)                                                           gtgAATTCACCCTTACCTGATGTGGCGCAAACGCCCTATCCCCCCACAAACGCATGAAGATTCAACATGTTGCAATAGATTTTGTAGGCTTGATAAGCGTAGCGCATCAGGCATTGAGCACCTAATGCCGGATGCGTCGTGAACGCCtt                                                                                       <  1:115409/149‑1 (MQ=37)                                                                ttCACTCTTACCTGATGTGGCGAAAACGCCTTATCCGCCTACAAACGGATGAAGATTCAACATGTTACAATAGATTTTGTAGGCCTGATAAGCGTAGCGAATCAGGCATTGCGCACCTAATGCCGGATACGTCGTGCAGCCCTTATCCg                                                                                  >  2:331280/1‑149 (MQ=25)                                                                  cACTCTTACCTGATGTGGCGAAAACGCCTTATCCGCCTACAAACGCATGAAGATTCAACATGTTGCAATAGATTTTGTAGGCCGGATAAGCGTAGAGCATCAGGCATTGAGCACCTAATGCCGGATGCGTCGTGAACGCCTTATCCGGc                                                                                <  1:873353/149‑1 (MQ=255)                                                                         aCCTGATGTGGCGAAAACGCCTTATCCGCCTACAAACGCATGAAGATTCAACATGTTGCAATAGATTTTGTAGGCCTGATAAGCGTAGCGCATCAGGCATTGAGCAACTAATGCCGGATGCGTCGTGAACGCCTTATCCGGCCTACaaa                                                                         >  1:943180/1‑149 (MQ=255)                                                                             gATGTGGCGAAAACGCCTTATCCGCCTACAAACGCATGAAGATTCAACATGTTGCAATAGATTTTGTAGTCCTGATAAGCGTAGCGCATCAGGCATTGAGCACCTAATGCCGGATGCGTCGTGAACGCCTTATCCGGCCTACAAACGCa                                                                     >  1:251892/1‑149 (MQ=255)                                                                                 tgGCGAAAACGCCTTATCCGCCTACAAACGCATGAAGATTCAACATGTTGCAATAGATTTTGTAGGCCTGATAAGCGTAGCGCATCAGGCATTGAGCACCTAATGCCGGATGCGTCGTGAACGTCTTATCCGGCCTACAAACGCACGaa                                                                 <  1:1053845/149‑1 (MQ=255)                                                                                   gCGAAAACGCCTTATCCGCCTACAAACGCATGAAGATTCAACATGTTGCAATAGATTTTGTAGGCCTGATAAGCGTAGCGCATCAGGCATTGAGCACCTAATGCCGGATGCGTCGTGAACGCCTTATCCGGCCTACAAACGCACGAAGa                                                               <  1:1327286/149‑1 (MQ=255)                                                                                    cGAAAACGCATTATCCGCCTACAAACGCATGAAGATTCAACATGTTGCAATAGATTTTGTAGGCCTGATAAGCGTAGCGCATCAGGCATTGAGCACCTAATGCCGGATGCGTCGTGAACGCCTTATCCGGCCTACAAACGCACGAAGAt                                                              <  2:819408/149‑1 (MQ=255)                                                                                     gAAAACGCCTTATCCGCCTACAAACGCATGAAGATTCAACATGTTGCAATAGATTTTGTAGGCCTGATAAGCGTAGCGCATCAGGCATTGAGCACCTAATGCCGGATGCGTCGTGAACGCCTTATCCGGCCTACAAACGCACGAAGAtt                                                             >  1:948474/1‑149 (MQ=255)                                                                                        aaCGCCTGATCCGCCGACAAACGCATGAAGATTCAACATGTTGCAATAGATTTTGTAGGCCTGATAAGCGTAGCGCATCAGGCATTGAGCACCTAATGCCGGCTGCGTCGTGAACGCCTTATCCGACCTACAAACGCCAGAAGATTCaa                                                          >  2:457369/1‑149 (MQ=25)                                                                                           gCCTTATCCGCCTACAAACGCATGAAGATTCAACATGTTGCAATAGATTTTGTAGGCCTGATAAGCGTAGCGCATCAGGCATTGAGCACCTAATGCCGGATGCGTCGTGAACGCCTTATCCGGCCTACACACGCACGAAGATTCAACAt                                                       >  1:392011/1‑149 (MQ=255)                                                                                           gCCTTATCCGCCTACAAACGCATGAAGATTCAACATGTTGCAATAGATTTTGTAGGCCTGATAAGCGTAGCGCATCAGGCATTGAGCACCTAATGCCGGATGCGTCGTGAACGCCTTATCCGGCCTACAAACGCACGGAGATTCAAccc                                                       >  2:1251007/1‑147 (MQ=255)                                                                                              ttATCCGCCTACAAACGCATGAAGATTCAACATGTTGCAATAGATTTTGTAGGCCTGATAAGCGTAGCGCATCAGGCATTGAGCACCTAATGCCGGATGCGTCGTGAACGCCTTATCCGGCCTACAAACGCACGAAGATTCAACATGtt                                                    <  1:568892/149‑1 (MQ=255)                                                                                              ttATCCGCCTACAAACGCATGAAGATTCAACATGTTGCAATAGATTTTATAGGCCGGATAAGCGTAGCGCATCAGGCATTGAGCACCTAATGCCGGATGCGTCGTGAACGCCTTATCCGGCCTACAAACGCACGAAGATTCAACATGtt                                                    >  1:923435/1‑149 (MQ=255)                                                                                                 tCCGCTTACAAACGCATGAAGATTCAACATGTTGCAATAGATTTTGTAGGCCTGATAAGCGTAGCGCATCAGGCATTGAGCACCTAATGCCGGATGCGTCGTGAACGCCTTATCCGCCCTACTAACGCACAAAGCTTCAACATCTTGCa                                                 >  2:1111634/1‑149 (MQ=25)                                                                                                 tCCGCCTACAAACGCATGAAGATTCAACATGTTGCAATAGATTTTGTAGGCCTGATAAGCGTAGCGCATAAGGCATTGAGCACCTAATGCCGGATGCGTCTTGAACGCCTTATCCGGCCTACAAACGCACGAAGATTCAACATGttccc                                                 >  1:385401/1‑146 (MQ=255)                                                                                                     ccTACAAACGCATGAATATTCAACATGTTGCAATAGATTTTGTAGGCCTGATAAGCGTAGCGCATCAGGCATTGAGCACCTAATGCCGGATGCGTCGTGAACGCCTTATCCGGCCTACAAACGCACGAAGATTCAACATGTTGCAATAg                                             <  1:1293123/149‑1 (MQ=255)                                                                                                          aaaCGCAGGAATATTCAACATGTTGCAATAGATTTTGTAGGCCTGATAAGCGTAGCGCATCAGGCATTGAGCACCTAATGCCGGATGCGTCTTGAACGCCTTTTCCGGCCTACAAACGCACGAAGATTCAACATGTTGCAATAGAtttt                                        <  1:4892/149‑1 (MQ=255)                                                                                                             cGCATGAAGATTCAACATGTTGCAATAGATTTTGTAGGCCTGATAAGCGTAGCGCATCAGGCATTGAGCACCTAATGCCGGATGCGTCGTGAACGCCTTATCCGGCCTACAAACGCACGAAGATTTAACATGTTGCAATAGATTTTGTa                                     <  1:1257110/149‑1 (MQ=255)                                                                                                             agCATGAAGATTCAACATGTTGCAATAGATTTTGTAGGCCTGATAAGCGTAGCGCATCAGGCATTGAGCACCTAATGCCGGATGCGTCGTGAACGCCTTATCCGGCCTACAAACGCACGAAGATTCAACATGTTGCAATAGATTTTGTa                                     <  1:1232270/148‑1 (MQ=255)                                                                                                                  gAAGATTCAACATGTTGCAATAGATTTTGTAGGCCTGATAAGCGTAGCGCATCAGGCATTGAGCACCTAATGCCGGATGCGTCGTGAACGCCTTATCCGGCCTACAAACGCACGAAGATTCAACATGTTGCAATAGATTTTGTAGGCCt                                >  1:885877/1‑149 (MQ=255)                                                                                                                                ttGCAATAGATTTTGTAGGCCTGATAAGCGTAGCGCATCAGGCATTGAGCACCTAATGCCGGATGCGTCGTGAACGCCTTATCCGACCTACAAACGCACGAAGATTCAACATGTTGCAATCGATTTTCTAGGCCTGATGAGCGTAgcgc                  >  2:1227088/1‑149 (MQ=255)                                                                                                                                    aaTAGATTTTGTAGGCCTGATAAGCGTAGCGCATCAGGCATTGAGCACCTAATGCCGGATGCGTCGTGAACGCCTTATCCGGCCTACAAACGCACGAAGATTCAACCTGTTGCAATAGATTTTGTAGGCCTGATTCGCGTAACGCATCa              >  2:482669/1‑149 (MQ=255)                                                                                                                                     aTAGATTTTGTAGGCCTGATAAGCGTAGCGCATCAGGCATTGAGCACCTAATGCCGGATGCGTCGTGAACGCCTTATCCGGCCTACAAACGCACGAAGATTCAACATGTTGCAATAGATTTTGTAGGCCTGATGAGCGTAGCGCATCAg             >  1:291516/1‑149 (MQ=255)                                                                                                                                                aGGCCTGATAAGCGTAGCGTATCAGGCATTGAGCACCTTATGCCTGTTGCGTTGTGTCCGCCTTATCCGGCCTACAAACGCACGAAGATGCAACATGTTGCAATAGATTTTGTAGGCCTGATGAGCGTAGCGCATCAGGCAATTCtact  <  1:511972/149‑1 (MQ=25)                                                                                                                                                 |                                                                                                                                                    GGCGGCGAGCATTTAGGTTAAAAAAATGCCCGGTTGTGAAAAGCAACCGGGCATCATTGTGAATTCACTCTTACCTGATGTGGCGAAAACGCCTTATCCGCCTACAAACGCATGAAGATTCAACATGTTGCAATAGATTTTGTAGGCCTGATAAGCGTAGCGCATCAGGCATTGAGCACCTAATGCCGGATGCGTCGTGAACGCCTTATCCGGCCTACAAACGCACGAAGATTCAACATGTTGCAATAGATTTTGTAGGCCTGATGAGCGTAGCGCATCAGGCAATTCTACT  >  NC_000913_3_bme_pgi/3150526‑3150817

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.