| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913_3_KO_pgi | = 2662392 | 60 (1.180) | 7 (0.210) +CTACAGTGAACAGAACCGTAGGTCGGATAAGGCGTTCACGCCGCATCCG |
4/188 | 5.2 | 15.1% | noncoding (84/266 nt) | REP184 (repetitive extragenic palindromic) element; contains 6 REP sequences | REP184 (repetitive extragenic palindromic) element; contains 6 REP sequences |
| ? | NC_000913_3_KO_pgi | = 2662583 | NA (NA) | coding (741/741 nt) | trmJ | tRNA mC32,mU32 2'‑O‑methyltransferase, SAM‑dependent | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
TTGACTGATTTAGTCGGGTATTTAACCTTCAGTGCCATTTTTTTATCGTGGCGTTTGTACCTGTTGTCGGATGCGGCGTGAACGCCATATCCGCCCTGGGGTTCTGTACACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACGGTTCTGTTC > NC_000913_3_KO_pgi/2662244‑2662534 | ttGACTGATTTAGTCGGGTATTTAACCTTCAGTGCCATTTTTTTATCGTGGCGTTTGTACCTGTTGTCGGATGCGGCGTGAACGCCATATCCGCCCTGGGGTTCTGTACACTGTAGGCCTGATAAGCCGCATTACGCAGCGCATCCGGc > 2:358816/1‑149 (MQ=255)ttGACAGATTTAGTCGGGTATTTAACCTTCAGTGCCATTTTTTTATAGTGGCGTTTGTACCTGTTGTCGGATGAGGCGTGAAAGCCATATCCGCCCTGGGGTTCTGTAAACTGTAAGCCTGATAAGACGCATTAAGCGTCGCACCAGGc > 2:580953/1‑149 (MQ=255) accgATTTAGTCGGGTATTTAACCTTCACTGCCATTTTTGTATCGTGGCGTTTGTACCTGTTGTCGGATGCGGCGTGAACGCCACATCCGCCCTGGGGTTCTGTACACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAAc < 1:219897/146‑1 (MQ=255) aCTGATTTAGTCGGGTATTTAACCTTCAGTGCCATTTTTTTATCGTGGCGTTTGTACCTGTTGTCGGATGCGGCGTGAACGCCATATCCGCCCTGGGGTTCTGTACACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAAc > 2:801268/1‑149 (MQ=255) tGATTTAGTCGGGTATTTAACCTTCAGTGCCATTTTTTTATCGTGGCGTTTGTACCTGTTGTCGGATGCGGCGTGAACGCCATATCCGCCCTGGGCTTCTGTACACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACgg < 1:592987/149‑1 (MQ=255) tGATTTAGTCGGGTATTTAACCTTCAGTGCCATGTAAAGATCGTGGCGTTTGTACCTGTTGTCGGATGCGGCGTGAACGCCATATCCGCCCTGGGGTTCTGTACACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCACCgg > 2:647077/1‑149 (MQ=25) ttAGTCGGGTATTTGACCTCCAGCGCCATTTTTTTATCGTGGCGTTTGTACCTGTTGGCGGATGCGGCGTGAACGCCATATCCGCCCTGGGGTTCTGTACACTGCAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGt < 1:532547/149‑1 (MQ=25) gggTATTTAACCTTCAGTGCCATTTTTTTATCGTGGCGTTTGTACCTGTTGTCGGATGCGGCGTGAACGCCATATCCGCCCTGGGGTTCTGTACACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATg > 1:380912/1‑149 (MQ=255) tATTTAACCTTCAGTGCCATTTTTTTATCGTGGCGTTTGTACCTGTTGTCGGATGCGGCGTGAACGCCATATCCGCCCTGGGGTTCTGTACACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATgcgg < 1:205120/149‑1 (MQ=255) aTTGAACCTTGTGTGGCTTTTTTTTATCGTGGCGTTTGTACCTGTTGTGGGAGGCGGCGTGAACGCCATATCCGCCCTGGGGTTCTGTACACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATgcggc < 2:232070/149‑1 (MQ=21) aCCTTCAGTGCCATTTTTTTATCGTGGCGTTTGTACCTGTTGTCGGATGCGGCGTGAACGCCATATCCGCCCTGGGGTTCTGTACACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTGaa < 1:643442/149‑1 (MQ=255) cTTCAGTGCCATTTTTTTATCGTGGCGTTTGTACCTGTTGTCGGATGCGGCGTGAACGCCATATCCGCCCTGGGGTTCTGTACACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCCGATGCCGCGTGAACg > 2:540639/1‑149 (MQ=255) aGTGCCATTTTTTTATCGTGGCGTTTGTACCTGTTGTCGGATGCGGCGTGAACGCCATATCCGCCCTGGGGTTCTGTACACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTGAACGCCtt > 2:15318/1‑149 (MQ=255) tGCCATTTTTTTATCGTGGCGTTTGTACCTGTTGTCGGATGCGGCGTGAACGCCATATCCGCCCTGGGGTTCTGTACACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTGAACGCCTTAt > 2:698748/1‑149 (MQ=255) tGCCATTTTTTTATCGTGGCGTTTGTACCTGTTGTCGGATGCGGCGTGAACGCCAGATCCGCCCTGGGGTTCTGTACACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTGAACGCCTTAt < 1:801268/149‑1 (MQ=255) tGCCATTTTTTTATCGTGGCCTTGGTACCCGTTGCCGGATGCGCCGTGATCGCCATATCCGCCCTGGGGTTCTGTACACTGTAGGCCTGATAAGACGCATTACGCGTCTCATCAGGCAACGGCTGTCGGATGCGGCGTGAACGCCTTAt < 1:427594/149‑1 (MQ=18) aTTTTTTTATCGTGGCGTTTGTACCTGTTGTCGGATGCGGCGTGAACGCCATATCCGCCCTGGGGTTCTGTACACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTGAACGCCTTATCCGa > 2:265385/1‑149 (MQ=255) aTTTTTTTATCGTGGCGTTTGTACCTGTTGTCGGATGCGGCGTGAACGCCATATCCGCCCTGGGGTTCTGTACACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTGAACGCCTTATCCGa > 1:25312/1‑149 (MQ=255) aTTTTTTTATCGTGGCGTTTGTACCTGTTGTCGGATGCGGCGTGAACGCCATATCCGCCCTGGGGTTATGTACACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGGTGCGGCGTGAACGACTTATCCGa > 1:125883/1‑149 (MQ=255) tttttttATCGTGGCGTTTGTACCTGTTGTCGGATGCGGCGTGAACGCCATATCCGCCCTGGGGTTCTGTACACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTGAACGCCTTATCCGAc > 1:3458/1‑149 (MQ=255) ttttttATCGTGGCGTTTGTACCTGTTGTCGGATGCGGCGTGAACGCCATATCCGCCCTGGGGTTCTGTACACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTGAACGCCTTATCCGAcc < 1:526065/149‑1 (MQ=255) gttttgATCGTGGCGTTTGTACCTGTTGTCACAAGGGGAGTGGACGCTACGTCCGCCCTGGGGTTCTGTACACTGCAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGATCTCCGATGCGGCGTGAACGCCTTATCCGccc < 2:412870/148‑1 (MQ=17) tCGTGTCGTTTGTACCTGTTGGCGGATGCGGCGTGAACGCCATATCCGCCCTGGGGTTCTGTACACTGTAGGCCGGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACGGtt < 2:245968/149‑1 (MQ=255) tCGTGGCGTTTGTACCTGTTGTCGGATGCGGCGTGAACGCCATATCCGCCCTGGGGTTCTGTACACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGt < 2:335925/113‑1 (MQ=255) tCGTGGCGTTTGTACCTGTTGTCGGATGCGGCGTGAACGCCATATCCGCCCTGGGGTTCTGTACACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGt > 1:335925/1‑113 (MQ=255) gTGGCGTTTGTACCTGTTGTCGGATGCGGCGTGAACGCCATATCCGCCCTGGGGTTCTGTACACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATgcgg > 1:125898/1‑120 (MQ=255) gTGGCGTTTGTACCTGTTGTCGGATGCGGCGTGAACGCCATATCCGCCCTGGGGTTCTGTACACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATgcgg < 2:125898/120‑1 (MQ=255) gTGGCGTTTGTACCTGTTGTCAGATGCGGCGTGAACGCCATATCCGCCCTGGGGTTCTGTACACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGAGTGCGGCGTGAAGGCCTTATCCGACTTACGGTTCt > 2:489752/1‑149 (MQ=17) gCGTTTGTACCTGTTGTCGGATGCGGCGTGAACGCCATATCCGCCCTGGGGTTCTGTACACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACgg < 2:311221/142‑1 (MQ=255) gCGTTTGTACCTGTTGTCGGATGCGGCGTGAACGCCATATCCGCCCTGGGGTTCTGTACACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACgg > 1:311221/1‑142 (MQ=255) gCGTTTGTACCTGTTGTCGGATGCGGCGTGAACGCCATATCCGCCCTGGGGTTCTGTACACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACGGTTCTGtt < 1:485477/149‑1 (MQ=255) cGTTTGTACCTGTTGTCGGATGCGGCGTGAACGCCATATCCGCCCTGGGGTTCTGTAAACTGTAGGCCTCATAAGACGCATGACCCGCCGCATCGGGCGACGGCTGTCGGATGCGGCAGGAACGCCTTATCCGACCGAGGGtgtggttc > 2:326375/1‑142 (MQ=17) tACCTGTTGTCGGATGCGGCGTGAACGCCATATCCGCCCTGGGGTTCTGTACACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACGGTTCTGTTCACTGTa > 1:368717/1‑149 (MQ=255) tgttgtCGGATGCGGAGTGAACGCCATATCCGCCCTGGGGTTCTGTACACTGTAGGGCTGATAAGACGCATTACGCGTCGCGTCAGGCAACGGCTGTCAGATGCGGCGGGGACGCCTTATCCGCGCTACGGTTCTGTTCACTGTAGGcc > 2:391246/1‑149 (MQ=14) tgtCGGATGCGGCGTGAACGCCATATCCGCCCTGGGGTTCTGTACACTGTAGGCCTAATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCAGCTCCGGCGTGACCGCCTTAACCGCCCTCCGAGTATGTGCCCTGTGCGCCTGa > 1:280620/1‑149 (MQ=14) gATGCGGCGTGAACGCCATATCCGCCCTGGGGTTCTGTACACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACGGTTCTGTTCACTGTAGGCCTGATAAGa < 2:3458/149‑1 (MQ=255) gATGCGGCGTGAACGCCATATCCGCCCTGGGGTTCTGTACACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACGGTTCTGTTCACTGTAGGCCTGATAAGa > 2:54171/1‑149 (MQ=255) cggcgTGAACGCCATATCCGCCCTGGGGTTCTGTACACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCa > 2:487525/1‑149 (MQ=255) gcgTGAACGCCATATCCGCCCTGGGGTTCTGTACACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCAtt > 1:140637/1‑149 (MQ=255) gTGAACGCCATATCCGCCCTGTGCTTCTGTACACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTAc < 1:89334/149‑1 (MQ=255) gTGAACGCCATATCCGCCCTGGGGTTCTGTACACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACGTTTCTGTTCACTGTAGGCCTGATAAGACGCATTAc < 1:15318/149‑1 (MQ=255) gCCATATCCGCCCTGGGGTTCTGTACACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCg > 1:13699/1‑149 (MQ=255) ccATATCCGCCCTGGGGTTCTGTACACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGc > 2:537914/1‑149 (MQ=255) tCCGCCCTGGGATTCTGTACATTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACTCGTCGCATCAg < 1:552281/149‑1 (MQ=255) cGCCCTGGGGTTCTGTACACCGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGc < 1:90985/149‑1 (MQ=38) gggTTCTGTACACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTc < 2:243174/61‑1 (MQ=39) gggTTCTGTACACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTc > 1:243174/1‑61 (MQ=39) ggTTCTGTACACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTGAAGGCCTTATCCGACCTACGGTTCTGATCACTGTAGGCCTGATAAGACGCGTTACGCGTCGCGTCAGCCACCGGCTg > 1:368349/1‑149 (MQ=11) tGTACACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGa > 1:205183/1‑149 (MQ=35) gTACACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCACAGGCTGTCGAAt > 1:355443/1‑149 (MQ=16) tACACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTc < 2:190063/53‑1 (MQ=33) tACACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTc > 1:190063/1‑53 (MQ=33) cTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACGGTTGTGTTCACTGTAGGGCTGATAAGACGCATTTCCCGTCGCATCTGGCAACGGCTGTCAGATgcgcc > 1:306222/1‑147 (MQ=11) gCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTGAACGACTTATCCGACCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTGAAc > 2:89517/1‑149 (MQ=255) tAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTGAACGCCTTa < 1:698748/149‑1 (MQ=255) aGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACGGTTCTGTTCACTGTAGGTCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTGAACGcc < 2:682179/144‑1 (MQ=255) aGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTGAACGcc > 1:682179/1‑144 (MQ=255) gACGCATTACGCGTCGCATCAGGCAACGGCTATCGGATGCGGCGTGAACGCCTTATCCGACCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTGAACGCCTTATcc > 1:694659/1‑149 (MQ=255) cgcgTCGCATCAGGCAACGGCTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACgg < 1:767449/149‑1 (MQ=255) cgcgTCGCATCAGGCAACGGCTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACgg < 1:487525/149‑1 (MQ=255) cgcgTCGCATCAGGCAACGGCTATCGGATGCGGCGTGAACGCCTTATCCGACCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACgg < 2:694659/149‑1 (MQ=255) aTCAGGCAACGGCTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATGCGCCGTTTACGCCATATCCAACCCACGGTTCTGGTc > 2:49105/1‑149 (MQ=14) | TTGACTGATTTAGTCGGGTATTTAACCTTCAGTGCCATTTTTTTATCGTGGCGTTTGTACCTGTTGTCGGATGCGGCGTGAACGCCATATCCGCCCTGGGGTTCTGTACACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACGGTTCTGTTC > NC_000913_3_KO_pgi/2662244‑2662534 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |