New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913_3_pae_pgi = 303658451 (1.290)5 (0.140) 5/262 4.6 9.7% coding (1523/1734 nt) recJ ssDNA exonuclease, 5' ‑‑> 3'‑specific
?NC_000913_3_pae_pgi = 3036607 46 (1.250)coding (1500/1734 nt) recJ ssDNA exonuclease, 5' ‑‑> 3'‑specific
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

GAGCTTATAAGCCAGTTGCACTTCGCGCACGCCGTTATCCGGCCAGAGGGCGGTATCGACATTAAAAGCAATACCATCCAGCAGTGGACCGCCGCCGACCGGTTCGACCATCACCTTCAAATGACGTTCGCCCACCAGCCGCTGTTGCAGCAGACGGAAATGACCGTCAAACAGCGGCTCCGGGAACATCTGCCCCCACGGGCCAGCATCGCGCAGCAGCTGCGCCACTTCCATGGTCATTTCGGCCGGGCTTAACGGACCGTCTGATACCACTTCGCCTTGCAATAGCGA  >  NC_000913_3_pae_pgi/3036439‑3036729
                                                                                                                                                 |                                                                                                                                                 
gAGCTTATAAGCCAGTTGCACTTCGCGCACGCCGTTATCCGGCCAGAGGGCGATATCGACATTAAAAGCAATACCATCCCGCAGTGGACCGCCGCCGACCGGTTGCACCATCAGCTGCAAATTACGTTCCCACACCCGCCGCGGtttcc                                                                                                                                                >  1:108722/1‑146 (MQ=255)
   gtgataAGCCATTTGCACTTCGCGCACGCCGTTATCCGGCGAGAGGGCGGTATCGACATTAAAAGCAATACCATCCAGCAGTGGACCGCCGCCGACCGGTTCGACCATCACCTTCAAATGACGTTCGCCCACCAGCCGCTGTTgcagca                                                                                                                                             <  2:205999/146‑1 (MQ=255)
     tataAGCCAGTTGCACTTCGCGCACGCCGGTATCCGGCCAGAGGGCGGTATCGACATTAAAAGCAATACCATCCAGCCGTGTATCGCCTCCTACCGGTTCGACCATCACCTTCAAATGACGTTCGCCCACCAGCCGCTGTTGCAGCAGa                                                                                                                                           <  1:132010/149‑1 (MQ=255)
          gCCAGTTGCACTTCGCGCACGCCGTTATCCGGCCAGAGGGCGGTATCGACATTAAAAGCAATACCATCCAGCAGTGGACCGCCGCCGACCGGTTCGACCATCACCTTCAAATGACGTTCGCCCACCAGCCGCTGTTGCAGCAGACGGaa                                                                                                                                      >  2:368321/1‑149 (MQ=255)
           ccAGTTGCACTTCGCGCACGCCGTTATCCGGCCAGAGGGCGGTATCGACATTAAAAGCAATACCATCCAGCAGTGGACCGCCGCCGACCGGTTCGACCATCCCCTTCAAATGACGTTCGCCCACCAGCCGCTGTTGCAGCAGACCGaaa                                                                                                                                     >  1:137455/1‑149 (MQ=255)
           ccAGTTGCACTTCGCGCACGCCGTTATCCGGCCAGAGGGCGGTATCGACATTAAAAGCAATACCATCCAGCAGTGGACCGCCGCCGACCGGTTCGACCAGCACCTTCAAATGACGTTCGCCCACCAGCCGCTGTTGCAGCAGACGGaaa                                                                                                                                     <  2:112169/149‑1 (MQ=255)
               ttGCACTTCGCGCACGCCGTTATCCGGCCAGAGGGCGGTATCGACATTAAAAGCAATACCATCCCGCAGTGGACCGCCGCCGACCGGTTCGACCATCACCTTCAAATGACGTTCGCCCACCAGCCGCTGTTGCAGCAGACGGAAATGAc                                                                                                                                 <  1:665394/149‑1 (MQ=255)
                    cTTCGCGCACGCCGTTATCCGGCCAGAGGGCGGTATCGACATTAAAAGCAATACCATCCAGCAGTGGACCGCCGCCGACCGGTTCGACCATCACCTTCAAATGACGTTCGCCCACCAGCCGCTGTTGCAGCAGACGGAAATGACCGTCa                                                                                                                            >  2:199646/1‑149 (MQ=255)
                     ttCGCGCACGCCGTTATCCGGCCAGAGGGCGGTATCGACATTAAAAGCAATACCATCCAGCAGTCGACGGCCGCAGGCCGGTTCCACCATCCCTTCCCAGGGGCGTCTGCGCACCTGCCGCTGTTGAAGCGGAAGGAAGTGACCGTCac                                                                                                                           >  2:146085/1‑148 (MQ=255)
                         cccACGACGTTATCCGGCCATAGGGCGGTACCGACATTAAAAGCAATACCATCCAGCAGTGGACCGCCGCCGACCGGTTCGACCATCACCTTCAAATGACGTTCGCCCACCAGCCGCTGTTGCAGCAGACGGAAATGACCGTCAAACAg                                                                                                                       <  2:488651/147‑1 (MQ=255)
                          gcACGCCGTTATCCGGCCAGAGGGCGGTATCGACATTAAAAGCAATACCATCCAGCAGTGGACCGCCGCCGACCGGTTCGACCATCACCTTCAAATGACGTTCGCCCACCAGCCGCTGTTGCAGCAGACGGAAATGACCGTCAAACAGc                                                                                                                      <  2:329458/149‑1 (MQ=255)
                                     tCCGGCCAGAGGGCGGTATCGACATTAAAAGCAATACCATCCAGCAGTGGACCGCCGCCGACCGGTTCGACCATCACCTTCAAATGACGTTCGCCCACCAGCCGCTGTTGCAGCAGACGGAAATGACCGTCAAACAGCGGCTCCGGGaa                                                                                                           <  1:597601/149‑1 (MQ=255)
                                             gagGGCGCTATCGACAAAGAAAGCAATACCATCCAGCAGTGGACCGCCGCCGACCGGTTCGACCATCACCTTCAAATGACGTTCGCCCACCAGCCGCTGTTGCACCAGACGGAAATGACCGTCACACAGCGGCTCCGGGAACATCTGcc                                                                                                   >  2:257260/1‑149 (MQ=255)
                                                       tCGACATTAAAAGCAATACCATCCAGCAGTGGACCGCCGCCGACCGGTTCGACCATCACCTTCAAATGACGTTCGCCCACCAGCCGCTGTTGCAGCAGACGGAAATGACCGTCAAACAGCGGCTCCGGGAACATCTGCCCCCACGGGcc                                                                                         >  1:444111/1‑149 (MQ=255)
                                                          aCATTAAAAGCAATACCATCCAGCAGTGGACCGCCGCCGACCGGTTCGACCATCACCTTCAAATGACGTTCGCCCACCAGCCGCTGTTGCAGCAGACGGAAATGACCGTCAAACAGCGGCTCCGGGAACATCTGc                                                                                                    >  1:256999/1‑135 (MQ=255)
                                                          aCATTAAAAGCAATACCATCCAGCAGTGGACCGCCGCCGACCGGTTCGACCATCACCTTCAAATGACGTTCGCCCACCAGCCGCTGTTGCAGCAGACGGAAATGACCGTCAAACAGCGGCTCCGGGAACATCTGc                                                                                                    <  2:256999/135‑1 (MQ=255)
                                                           cATTAAAAGCAATACCACCCAGCAGTGGACCGCCGCCGACCGGTTCGACCATCACCTTCAAATGACGTTCGCCCACCAGCCGCTGTTGCAGCAGACGGAAATGACCGTCAAACAGCGGCTCCGGGAACATCTGCCCCCACGGGCCAGCa                                                                                     <  2:313268/149‑1 (MQ=255)
                                                            aTTAAAAGCAATACCATCCAGCAGTGGACCGCCGCCGACCGGTTCGACCATCACCTTCAAATGACGTTCGCCCACCAGCCGCTGTTGCAGCAGACGGAAATGACCGTCAAACAGCGGCTCCGGGAAGATCTGCCCCCACGGGCCAGCAt                                                                                    >  1:572703/1‑149 (MQ=255)
                                                             ttAAAAGCAATACCATCCAGCAGTGGACCGCCGCCGACCGGTTCGACCATCACCTTCAAATGACGTTCGCCCACCAGCCGCTGTTGCAGCCGACGGAAATGACCGTCCAACAGCGGCTCCGGGAACCTCTGCCCCCACGCGCCAGCATc                                                                                   >  1:188238/1‑149 (MQ=255)
                                                                acaGCAATACCATCCAGCCGTGGACCGCCGCCGACCGGTTCGACCATCACCTTCAAATGACGTTCGCCCACCAGCCGCTGTTGCAGCAGACGGAAATGCCCGTCAAACAGCGGCTCCGGGAACATCTGCCCCCACGGGCCAGCATcgcg                                                                                <  1:35703/147‑1 (MQ=255)
                                                                   gCAATACCATCCAGCAGTGGACCGCCGCCGACCGGTTCGACCATCACCTTCAAATGACGTTCGCCCACCAGCCGCTGTTGCAGCAGACGGAAATGAACGTCAAACAGCGGCTCCGGGAACATCTGCCCCCACGGGCCAGCATCgcgccc                                                                             >  2:240292/1‑147 (MQ=255)
                                                                    cAATACCATCCAGCAGTGGACCGCCGCCGACCGGTTCGACCATCACCTTCAAATGACGTTCGCCCACCAGCCGCTGTTGCAGCAGACGGAAATGACCGTCAAACAGCGGCTCCGGGAACATCTGCCCCCACGGGCCAGCATCGCgcaac                                                                            >  1:666545/1‑147 (MQ=255)
                                                                     aaTACCATCCAGCAGTGGACCGCCGCCGACCGGTTCGACCATCACCTTCAAATGACGTTCGCCCACCAGCCGCTGTTGCAGCAGACGGAAATGACCGTCAAACAGCGGCTCCGGGAACATCTGCCCCCACGGGCCAGCATCCCgcagcc                                                                           >  2:197008/1‑148 (MQ=255)
                                                                       tACCATCCAGCAGTGGACCGCCGCCGACCGGTTCGACCATCACCTTCAAATGACGTTCGCCCACCAGCCGCTGTTGCAGCAGACGGAAATGACCGTCAAACAGCGGCTCCgg                                                                                                              <  1:30338/112‑1 (MQ=255)
                                                                       tACCATCCAGCAGTGGACCGCCGCCGACCGGTTCGACCATCACCTTCAAATGACGTTCGCCCACCAGCCGCTGTTGCAGCAGACGGAAATGACCGTCAAACAGCGGCTCCgg                                                                                                              >  2:30338/1‑112 (MQ=255)
                                                                       tACCATCCAGCAGTGGACCGCCGCCGACCGGTTCGACCATCACCTTCAAATGACGTTCGCCCACCAGCCGCTGTTGCAGCAGACGGAAATGACCGTCAAACAGCGGCTCCGGGAACATCTGCCCCCACGGGCCACCATCGCGCagcagc                                                                         >  2:503227/1‑149 (MQ=255)
                                                                         ccATCCAGCAGTGGACCGCCGCCGACCGGTTCGACCATCACCTTCAAATGACGTTCGCCCACCAGCCGCTGTTGCAGCAGACGGAAATGACCGTCAAACAGCGGCTCCGGGAACATCTGCCCCCACGGGCCAGCATCGCGCAGCAGCTg                                                                       >  1:494158/1‑149 (MQ=255)
                                                                          cATCCAGCAGTGGACCGCCGCCGACCGGTTCGACCATCACCTTCAAATGACGTTCGCCCACCAGCCGCTGTTGCAGCAGACGGAAATGACCGTCAAACAGCGGCTCCGGGGACATCTGCCCCCCCGGGCCAGCATCGCGCAGCAGCTgc                                                                      >  2:629572/1‑149 (MQ=255)
                                                                              cagcagTGGACCGCCGCCGACCGGTTCAACCATCACCTTCAAATGACGTTCGCCCACCAGCCGCTGTTGCAGCAGACGGAAATGACCGTCAAACAGCGGCCCCGGGACCATCTGCCCCCACGGGCCAGCATAGCGCCGCAGCCGCCCCa                                                                  >  2:681380/1‑149 (MQ=255)
                                                                                gcagTGGACCGCCGCCGACCGGTTCGACCATCACCTTCAAATGACGTTCGCCCACCAGCCGCTGTTGCAGCAGACGGAAATGACCGTCAAACAGCGGCTCCGGGAACATCTGCCCCCACGGGCCAGCATCGCGCAGCAGCTGCGCCACt                                                                >  2:521871/1‑149 (MQ=255)
                                                                                    tGGACCGCCGCCGACCGGTTCGACCATCACCTTCAAATGACGTTCGCCCACCAGCCGCTGTTGCAGCAGACGGAAATGACCGTCAAACAGCGGCTCCGGGAACATCTGCCCCCACGGGCCAGCATCGCGCAGCAGCTGCGCCACTTCCa                                                            <  2:267210/149‑1 (MQ=255)
                                                                                       aCCGCCGCCGACCGGTTCGACCATCACCTTCAAATGACGTTCGCCCACCAGCCGCTGTTGCAGCAGACGGAAATGACCGTCAAACAGCGGCTCCGGGAACATCTGCCCCCACGGGCCAGCATCGCGCAGCAGCTGCGCCACTTCCATgg                                                         <  2:278817/149‑1 (MQ=255)
                                                                                         cgccgccgACCGGTTCGACCATCACCTTCAAATGACGTTCGCCCACCAGCCGCTGTTGCAGCAGACGGAAATCACCGTCAAACAGCGGCTCCCGACACATCTGCCCCCACGGGCCAGCATCGCACAGCAGCTGCGACACCTCCATggcc                                                       >  2:122813/1‑147 (MQ=255)
                                                                                             gccgACCGGTTCGACCATCACCTTCAAATGACGTTCGCCCACCAGCCGCTGTTGCAGCAGACGGAAATGACCGTCAAACAGCGGCTCCGGGAACATCTGCCCCCACGGGCCAGCATCGCGCAGCAGCTGCGCCACTTCCCTGGTCAttt                                                   >  2:115813/1‑149 (MQ=255)
                                                                                                 aCCGGTTCGACCATCACCTTCAAATGACGTTCGCCCACCAGCCGCTGTTGCAGCAGACGGAAATGACCGTCAAACAGCGGCTCCGGGAACATCTGCCCCCACGGGCCAGCATCGCGCAGCAGCTGCGCCACTTCCATGGTCATTTCGGc                                               >  1:380213/1‑149 (MQ=255)
                                                                                                  ccGGTTCGACCATCACCTTCAAATGACGTTCGCCCACCAGCCGCTGTTGCAGAAGACGGAAATGACCGTCAAACAGCGGCTCCGGGAACATCTGCCCCCACGGGCCAGCATCCCGCAGCAGCTGCGCCACTTCCATGGACACTTCGGcc                                              >  1:197112/1‑149 (MQ=255)
                                                                                                   cGGTTCGACCATCACCTTCAAATGACGTTCGCCCACCAGCCGCTGTTGCAGCAGACGGAAATGACCGTCAAACAGCGGCTCCGGGAACATCTGCCCCCACGGGCCAGCATCGCGCCGCAGCTGCGCCACTTCCATGGTCATTTCGGcgg                                             >  1:172046/1‑147 (MQ=255)
                                                                                                     gTTCGACGATAACCGTGAATTGACGTTCGACCAACAGCCGATGTTGAAGAAGACGGAAAGGACCGTCAAACAGCGGCTCCGGGAACATCTGGCGCCACGGGCCAGCATCGCGCAGCAGCTGAGCCACTTCCATGGTCATTTCGGCCggg                                           <  2:510228/149‑1 (MQ=255)
                                                                                                      ttCGACCATCACCTTCAAATGACGTTCGCCCACCAGCCGCTGTTGCAGCAGACGGAAATGACCGTCAAACAGCGGCTCCGGGAACATCTGCCCCCACGGGCCAGCATCGCGCAGCAGCTGCGCCACTTCCATGGTCATTTCGGCCGGGc                                          <  1:199646/149‑1 (MQ=255)
                                                                                                                  cTTCAAATGACGTTCGCCCACCAGCCGCTGTTGCAGCAGACGGAAATGACCGTCAAACAGCGGCTCCGGGAACATCTGCCCCCACGGGCCAGCATCGCGCAGCAGCTGCGCCACTTCCATGGTCATTTCGGCCGGGCTTAACGGACCGt                              >  2:341959/1‑149 (MQ=255)
                                                                                                                   ttCAAATGACGTTCGCCCACCAGCCGCTGTTGCAGCAGACGGAAATGACCGTCAAACAGCGGCTCCGGGAACATCTGCCCCCACGGGCCAGCATCGCGCAGCAGCTGCGCCACTTCCATGGTCATTTCGGCCGGGCTTAACGGACCGTc                             <  2:13231/149‑1 (MQ=255)
                                                                                                                        aTGACGTTCGCCCACCAGCCGCTGTTGCAGCAGACGGAAATGACCGTCAAACAGCGGCTCCGGGAACATCTGCCCCCACGGGCCAGCATCGCGCAGCAGCTGCGCCACTTCCATGGTCATTTCGGCCGGGCTTAACGGACCGTCTGATa                        <  2:558478/149‑1 (MQ=255)
                                                                                                                              ttCGCCCACCAGCCGCTGTTGCAGCAGACGGAAATGACCGTCAAACAGCGGCTCCGGGAACATCTGCCCCCACTGGCCAGCATCGCGCAGCAGCTGCGCCACTTCCATGGTCATTTCGGCCGGGCTTAACGGACCGTCTGATACCACtt                  >  2:265599/1‑149 (MQ=255)
                                                                                                                              tccccccACAAGCCGCCGTGGCAGCAGACGGAAATGACCGTCAAACAGCGGCTCCGGGAACATCTGCCCCCACGGGCCAGCATCGCGCAGCAGCTGCGCCACTTCCATGGTCATTTCGGCCGGGCTTAACGGACCGTCTGATACCACtt                  <  1:147656/145‑1 (MQ=255)
                                                                                                                                  cccACCAGCCGCTGTTGCAGCAGACGGAAATGACCGTCAAACAGCGGCTCCGGACACATCTGCCCCCACGGCCCAGCATCACGCAGCAGCTCCGCCACTTCCATGGTCGTTTCAGCAGGGCTTAACGGACCGTCTACTCCCACTCCGcc              >  2:194103/1‑149 (MQ=255)
                                                                                                                                    caccaGCCGCTGTTGCAGCAGACGGAAATGACCGTCAAACAGCGGCTCCGGGAACATCTGCCCCCACGGGCCAGCATCGCGCAGCAGCTGCGCCACTTCCATGGTCATTTCGGCCGGGCTTAACGGACCGTCTGATACCACTTCGCCtt            <  1:304799/149‑1 (MQ=255)
                                                                                                                                    caccaGCCGCTGTTGCAGCAGACGGAAATGACCGTCAAACAGCGGCTCCGGGAACATCTGCCCCCACGGGCCAGCATCGCGCAGCAGCTGCGCCACTTCCACGGAAATTTCGGCCGGGCTTAACGGACCGTCTGATACCACTTCGCCtt            <  1:368321/149‑1 (MQ=255)
                                                                                                                                        aGCCGCTGTTGCAGCAGACGGAAATGACCGTCAAACAGCGGCTCCGGGAACATCTGCCCCCACGGGCCAGCATCGCGCAGCAGCTGCGCCACTTCCATGGTCa                                                      >  2:380766/1‑103 (MQ=255)
                                                                                                                                        aGCCGCTGTTGCAGCAGACGGAAATGACCGTCAAACAGCGGCTCCGGGAACATCTGCCCCCACGGGCCAGCATCGCGCAGCAGCTGCGCCACTTCCATGGTCa                                                      <  1:380766/103‑1 (MQ=255)
                                                                                                                                         gctgCTGTTGCAGCAGACGGAAATGACCGTCAAACAGCGGCTCCGGGAACATCTGCCCCCACGGGCCAGCATCGCGCAGCAGCTGCGCCACTTCCATGGTCATTTCGGCCGGGCTTAACGGACCGTCTGATACCACTTCGCCTTGCAAt       <  1:44535/146‑1 (MQ=255)
                                                                                                                                         gCCGCTGTTGCAGCAGACGGAAATGACCGTCAAACAGCGGCTCCGGGAACATCTGCCCCCACGGGCCAGCATCGCGCAGCAGCTGCGCCACTTCCATGGTCATTTCGGCCGGGATCAACTGACCGTCTGATACCACTTCGCCTTGCAAt       <  1:341959/149‑1 (MQ=255)
                                                                                                                                              tGTTGCAGCAGACGGAAATGACCGTCAAACAGCGGCTCCGGGAACATCTGCCCCCACGGGCCAGCATCGAGCAGCAGCTGCGCCACTTCCATGGCTATTTCGGCCGGTCTTCACGGACGCTCTAATGCCACTTCGCCTTGCAATAGCGa  >  1:332875/1‑149 (MQ=255)
                                                                                                                                                 |                                                                                                                                                 
GAGCTTATAAGCCAGTTGCACTTCGCGCACGCCGTTATCCGGCCAGAGGGCGGTATCGACATTAAAAGCAATACCATCCAGCAGTGGACCGCCGCCGACCGGTTCGACCATCACCTTCAAATGACGTTCGCCCACCAGCCGCTGTTGCAGCAGACGGAAATGACCGTCAAACAGCGGCTCCGGGAACATCTGCCCCCACGGGCCAGCATCGCGCAGCAGCTGCGCCACTTCCATGGTCATTTCGGCCGGGCTTAACGGACCGTCTGATACCACTTCGCCTTGCAATAGCGA  >  NC_000913_3_pae_pgi/3036439‑3036729

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.