New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913_3_pae_pgi	= 3036584	51 (1.290)	5 (0.140)	5/262	4.6	9.7%	coding (1523/1734 nt)	recJ	ssDNA exonuclease, 5' ‑‑> 3'‑specific
	?	NC_000913_3_pae_pgi	= 3036607	46 (1.250)					coding (1500/1734 nt)	recJ	ssDNA exonuclease, 5' ‑‑> 3'‑specific
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

CTTCGCGCACGCCGTTATCCGGCCAGAGGGCGGTATCGACATTAAAAGCAATACCATCCAGCAGTGGACCGCCGCCGACCGGTTCGACCATCACCTTCAAATGACGTTCGCCCACCAGCCGCTGTTGCAGCAGACGGAAATGACCGTCAAACAGCGGCTCCGGGAACATCTGCCCCCACGGGCCAGCATCGCGCAGCAGCTGCGCCACTTCCATGGTCATTTCGGCCGGGCTTAACGGACCGTCTGATACCACTTCGCCTTGCAATAGCGAAGGGTCCAGCCACTCAGTAACCA  >  NC_000913_3_pae_pgi/3036459‑3036752                                                                                                                                                     |                                                                                                                                                  cTTCGCGCACGCCGTTATCCGGCCAGAGGGCGGTATCGACATTAAAAGCAATACCATCCAGCAGTGGACCGCCGCCGACCGGTTCGACCATCACCTTCAAATGACGTTCGCCCACCAGCCGCTGTTGCAGCAGACGGAAATGACCGTCa                                                                                                                                                   >  2:199646/1‑149 (MQ=255)  ttCGCGCACGCCGTTATCCGGCCAGAGGGCGGTATCGACATTAAAAGCAATACCATCCAGCAGTCGACGGCCGCAGGCCGGTTCCACCATCCCTTCCCAGGGGCGTCTGCGCACCTGCCGCTGTTGAAGCGGAAGGAAGTGACCGTCac                                                                                                                                                  >  2:146085/1‑148 (MQ=255)      cccACGACGTTATCCGGCCATAGGGCGGTACCGACATTAAAAGCAATACCATCCAGCAGTGGACCGCCGCCGACCGGTTCGACCATCACCTTCAAATGACGTTCGCCCACCAGCCGCTGTTGCAGCAGACGGAAATGACCGTCAAACAg                                                                                                                                              <  2:488651/147‑1 (MQ=255)       gcACGCCGTTATCCGGCCAGAGGGCGGTATCGACATTAAAAGCAATACCATCCAGCAGTGGACCGCCGCCGACCGGTTCGACCATCACCTTCAAATGACGTTCGCCCACCAGCCGCTGTTGCAGCAGACGGAAATGACCGTCAAACAGc                                                                                                                                             <  2:329458/149‑1 (MQ=255)                  tCCGGCCAGAGGGCGGTATCGACATTAAAAGCAATACCATCCAGCAGTGGACCGCCGCCGACCGGTTCGACCATCACCTTCAAATGACGTTCGCCCACCAGCCGCTGTTGCAGCAGACGGAAATGACCGTCAAACAGCGGCTCCGGGaa                                                                                                                                  <  1:597601/149‑1 (MQ=255)                          gagGGCGCTATCGACAAAGAAAGCAATACCATCCAGCAGTGGACCGCCGCCGACCGGTTCGACCATCACCTTCAAATGACGTTCGCCCACCAGCCGCTGTTGCACCAGACGGAAATGACCGTCACACAGCGGCTCCGGGAACATCTGcc                                                                                                                          >  2:257260/1‑149 (MQ=255)                                    tCGACATTAAAAGCAATACCATCCAGCAGTGGACCGCCGCCGACCGGTTCGACCATCACCTTCAAATGACGTTCGCCCACCAGCCGCTGTTGCAGCAGACGGAAATGACCGTCAAACAGCGGCTCCGGGAACATCTGCCCCCACGGGcc                                                                                                                >  1:444111/1‑149 (MQ=255)                                       aCATTAAAAGCAATACCATCCAGCAGTGGACCGCCGCCGACCGGTTCGACCATCACCTTCAAATGACGTTCGCCCACCAGCCGCTGTTGCAGCAGACGGAAATGACCGTCAAACAGCGGCTCCGGGAACATCTGc                                                                                                                           <  2:256999/135‑1 (MQ=255)                                       aCATTAAAAGCAATACCATCCAGCAGTGGACCGCCGCCGACCGGTTCGACCATCACCTTCAAATGACGTTCGCCCACCAGCCGCTGTTGCAGCAGACGGAAATGACCGTCAAACAGCGGCTCCGGGAACATCTGc                                                                                                                           >  1:256999/1‑135 (MQ=255)                                        cATTAAAAGCAATACCACCCAGCAGTGGACCGCCGCCGACCGGTTCGACCATCACCTTCAAATGACGTTCGCCCACCAGCCGCTGTTGCAGCAGACGGAAATGACCGTCAAACAGCGGCTCCGGGAACATCTGCCCCCACGGGCCAGCa                                                                                                            <  2:313268/149‑1 (MQ=255)                                         aTTAAAAGCAATACCATCCAGCAGTGGACCGCCGCCGACCGGTTCGACCATCACCTTCAAATGACGTTCGCCCACCAGCCGCTGTTGCAGCAGACGGAAATGACCGTCAAACAGCGGCTCCGGGAAGATCTGCCCCCACGGGCCAGCAt                                                                                                           >  1:572703/1‑149 (MQ=255)                                          ttAAAAGCAATACCATCCAGCAGTGGACCGCCGCCGACCGGTTCGACCATCACCTTCAAATGACGTTCGCCCACCAGCCGCTGTTGCAGCCGACGGAAATGACCGTCCAACAGCGGCTCCGGGAACCTCTGCCCCCACGCGCCAGCATc                                                                                                          >  1:188238/1‑149 (MQ=255)                                             acaGCAATACCATCCAGCCGTGGACCGCCGCCGACCGGTTCGACCATCACCTTCAAATGACGTTCGCCCACCAGCCGCTGTTGCAGCAGACGGAAATGCCCGTCAAACAGCGGCTCCGGGAACATCTGCCCCCACGGGCCAGCATcgcg                                                                                                       <  1:35703/147‑1 (MQ=255)                                                gCAATACCATCCAGCAGTGGACCGCCGCCGACCGGTTCGACCATCACCTTCAAATGACGTTCGCCCACCAGCCGCTGTTGCAGCAGACGGAAATGAACGTCAAACAGCGGCTCCGGGAACATCTGCCCCCACGGGCCAGCATCgcgccc                                                                                                    >  2:240292/1‑147 (MQ=255)                                                 cAATACCATCCAGCAGTGGACCGCCGCCGACCGGTTCGACCATCACCTTCAAATGACGTTCGCCCACCAGCCGCTGTTGCAGCAGACGGAAATGACCGTCAAACAGCGGCTCCGGGAACATCTGCCCCCACGGGCCAGCATCGCgcaac                                                                                                   >  1:666545/1‑147 (MQ=255)                                                  aaTACCATCCAGCAGTGGACCGCCGCCGACCGGTTCGACCATCACCTTCAAATGACGTTCGCCCACCAGCCGCTGTTGCAGCAGACGGAAATGACCGTCAAACAGCGGCTCCGGGAACATCTGCCCCCACGGGCCAGCATCCCgcagcc                                                                                                  >  2:197008/1‑148 (MQ=255)                                                    tACCATCCAGCAGTGGACCGCCGCCGACCGGTTCGACCATCACCTTCAAATGACGTTCGCCCACCAGCCGCTGTTGCAGCAGACGGAAATGACCGTCAAACAGCGGCTCCgg                                                                                                                                     >  2:30338/1‑112 (MQ=255)                                                    tACCATCCAGCAGTGGACCGCCGCCGACCGGTTCGACCATCACCTTCAAATGACGTTCGCCCACCAGCCGCTGTTGCAGCAGACGGAAATGACCGTCAAACAGCGGCTCCgg                                                                                                                                     <  1:30338/112‑1 (MQ=255)                                                    tACCATCCAGCAGTGGACCGCCGCCGACCGGTTCGACCATCACCTTCAAATGACGTTCGCCCACCAGCCGCTGTTGCAGCAGACGGAAATGACCGTCAAACAGCGGCTCCGGGAACATCTGCCCCCACGGGCCACCATCGCGCagcagc                                                                                                >  2:503227/1‑149 (MQ=255)                                                      ccATCCAGCAGTGGACCGCCGCCGACCGGTTCGACCATCACCTTCAAATGACGTTCGCCCACCAGCCGCTGTTGCAGCAGACGGAAATGACCGTCAAACAGCGGCTCCGGGAACATCTGCCCCCACGGGCCAGCATCGCGCAGCAGCTg                                                                                              >  1:494158/1‑149 (MQ=255)                                                       cATCCAGCAGTGGACCGCCGCCGACCGGTTCGACCATCACCTTCAAATGACGTTCGCCCACCAGCCGCTGTTGCAGCAGACGGAAATGACCGTCAAACAGCGGCTCCGGGGACATCTGCCCCCCCGGGCCAGCATCGCGCAGCAGCTgc                                                                                             >  2:629572/1‑149 (MQ=255)                                                           cagcagTGGACCGCCGCCGACCGGTTCAACCATCACCTTCAAATGACGTTCGCCCACCAGCCGCTGTTGCAGCAGACGGAAATGACCGTCAAACAGCGGCCCCGGGACCATCTGCCCCCACGGGCCAGCATAGCGCCGCAGCCGCCCCa                                                                                         >  2:681380/1‑149 (MQ=255)                                                             gcagTGGACCGCCGCCGACCGGTTCGACCATCACCTTCAAATGACGTTCGCCCACCAGCCGCTGTTGCAGCAGACGGAAATGACCGTCAAACAGCGGCTCCGGGAACATCTGCCCCCACGGGCCAGCATCGCGCAGCAGCTGCGCCACt                                                                                       >  2:521871/1‑149 (MQ=255)                                                                 tGGACCGCCGCCGACCGGTTCGACCATCACCTTCAAATGACGTTCGCCCACCAGCCGCTGTTGCAGCAGACGGAAATGACCGTCAAACAGCGGCTCCGGGAACATCTGCCCCCACGGGCCAGCATCGCGCAGCAGCTGCGCCACTTCCa                                                                                   <  2:267210/149‑1 (MQ=255)                                                                    aCCGCCGCCGACCGGTTCGACCATCACCTTCAAATGACGTTCGCCCACCAGCCGCTGTTGCAGCAGACGGAAATGACCGTCAAACAGCGGCTCCGGGAACATCTGCCCCCACGGGCCAGCATCGCGCAGCAGCTGCGCCACTTCCATgg                                                                                <  2:278817/149‑1 (MQ=255)                                                                      cgccgccgACCGGTTCGACCATCACCTTCAAATGACGTTCGCCCACCAGCCGCTGTTGCAGCAGACGGAAATCACCGTCAAACAGCGGCTCCCGACACATCTGCCCCCACGGGCCAGCATCGCACAGCAGCTGCGACACCTCCATggcc                                                                              >  2:122813/1‑147 (MQ=255)                                                                          gccgACCGGTTCGACCATCACCTTCAAATGACGTTCGCCCACCAGCCGCTGTTGCAGCAGACGGAAATGACCGTCAAACAGCGGCTCCGGGAACATCTGCCCCCACGGGCCAGCATCGCGCAGCAGCTGCGCCACTTCCCTGGTCAttt                                                                          >  2:115813/1‑149 (MQ=255)                                                                              aCCGGTTCGACCATCACCTTCAAATGACGTTCGCCCACCAGCCGCTGTTGCAGCAGACGGAAATGACCGTCAAACAGCGGCTCCGGGAACATCTGCCCCCACGGGCCAGCATCGCGCAGCAGCTGCGCCACTTCCATGGTCATTTCGGc                                                                      >  1:380213/1‑149 (MQ=255)                                                                               ccGGTTCGACCATCACCTTCAAATGACGTTCGCCCACCAGCCGCTGTTGCAGAAGACGGAAATGACCGTCAAACAGCGGCTCCGGGAACATCTGCCCCCACGGGCCAGCATCCCGCAGCAGCTGCGCCACTTCCATGGACACTTCGGcc                                                                     >  1:197112/1‑149 (MQ=255)                                                                                cGGTTCGACCATCACCTTCAAATGACGTTCGCCCACCAGCCGCTGTTGCAGCAGACGGAAATGACCGTCAAACAGCGGCTCCGGGAACATCTGCCCCCACGGGCCAGCATCGCGCCGCAGCTGCGCCACTTCCATGGTCATTTCGGcgg                                                                    >  1:172046/1‑147 (MQ=255)                                                                                  gTTCGACGATAACCGTGAATTGACGTTCGACCAACAGCCGATGTTGAAGAAGACGGAAAGGACCGTCAAACAGCGGCTCCGGGAACATCTGGCGCCACGGGCCAGCATCGCGCAGCAGCTGAGCCACTTCCATGGTCATTTCGGCCggg                                                                  <  2:510228/149‑1 (MQ=255)                                                                                   ttCGACCATCACCTTCAAATGACGTTCGCCCACCAGCCGCTGTTGCAGCAGACGGAAATGACCGTCAAACAGCGGCTCCGGGAACATCTGCCCCCACGGGCCAGCATCGCGCAGCAGCTGCGCCACTTCCATGGTCATTTCGGCCGGGc                                                                 <  1:199646/149‑1 (MQ=255)                                                                                               cTTCAAATGACGTTCGCCCACCAGCCGCTGTTGCAGCAGACGGAAATGACCGTCAAACAGCGGCTCCGGGAACATCTGCCCCCACGGGCCAGCATCGCGCAGCAGCTGCGCCACTTCCATGGTCATTTCGGCCGGGCTTAACGGACCGt                                                     >  2:341959/1‑149 (MQ=255)                                                                                                ttCAAATGACGTTCGCCCACCAGCCGCTGTTGCAGCAGACGGAAATGACCGTCAAACAGCGGCTCCGGGAACATCTGCCCCCACGGGCCAGCATCGCGCAGCAGCTGCGCCACTTCCATGGTCATTTCGGCCGGGCTTAACGGACCGTc                                                    <  2:13231/149‑1 (MQ=255)                                                                                                     aTGACGTTCGCCCACCAGCCGCTGTTGCAGCAGACGGAAATGACCGTCAAACAGCGGCTCCGGGAACATCTGCCCCCACGGGCCAGCATCGCGCAGCAGCTGCGCCACTTCCATGGTCATTTCGGCCGGGCTTAACGGACCGTCTGATa                                               <  2:558478/149‑1 (MQ=255)                                                                                                           ttCGCCCACCAGCCGCTGTTGCAGCAGACGGAAATGACCGTCAAACAGCGGCTCCGGGAACATCTGCCCCCACTGGCCAGCATCGCGCAGCAGCTGCGCCACTTCCATGGTCATTTCGGCCGGGCTTAACGGACCGTCTGATACCACtt                                         >  2:265599/1‑149 (MQ=255)                                                                                                           tccccccACAAGCCGCCGTGGCAGCAGACGGAAATGACCGTCAAACAGCGGCTCCGGGAACATCTGCCCCCACGGGCCAGCATCGCGCAGCAGCTGCGCCACTTCCATGGTCATTTCGGCCGGGCTTAACGGACCGTCTGATACCACtt                                         <  1:147656/145‑1 (MQ=255)                                                                                                               cccACCAGCCGCTGTTGCAGCAGACGGAAATGACCGTCAAACAGCGGCTCCGGACACATCTGCCCCCACGGCCCAGCATCACGCAGCAGCTCCGCCACTTCCATGGTCGTTTCAGCAGGGCTTAACGGACCGTCTACTCCCACTCCGcc                                     >  2:194103/1‑149 (MQ=255)                                                                                                                 caccaGCCGCTGTTGCAGCAGACGGAAATGACCGTCAAACAGCGGCTCCGGGAACATCTGCCCCCACGGGCCAGCATCGCGCAGCAGCTGCGCCACTTCCATGGTCATTTCGGCCGGGCTTAACGGACCGTCTGATACCACTTCGCCtt                                   <  1:304799/149‑1 (MQ=255)                                                                                                                 caccaGCCGCTGTTGCAGCAGACGGAAATGACCGTCAAACAGCGGCTCCGGGAACATCTGCCCCCACGGGCCAGCATCGCGCAGCAGCTGCGCCACTTCCACGGAAATTTCGGCCGGGCTTAACGGACCGTCTGATACCACTTCGCCtt                                   <  1:368321/149‑1 (MQ=255)                                                                                                                     aGCCGCTGTTGCAGCAGACGGAAATGACCGTCAAACAGCGGCTCCGGGAACATCTGCCCCCACGGGCCAGCATCGCGCAGCAGCTGCGCCACTTCCATGGTCa                                                                             >  2:380766/1‑103 (MQ=255)                                                                                                                     aGCCGCTGTTGCAGCAGACGGAAATGACCGTCAAACAGCGGCTCCGGGAACATCTGCCCCCACGGGCCAGCATCGCGCAGCAGCTGCGCCACTTCCATGGTCa                                                                             <  1:380766/103‑1 (MQ=255)                                                                                                                      gctgCTGTTGCAGCAGACGGAAATGACCGTCAAACAGCGGCTCCGGGAACATCTGCCCCCACGGGCCAGCATCGCGCAGCAGCTGCGCCACTTCCATGGTCATTTCGGCCGGGCTTAACGGACCGTCTGATACCACTTCGCCTTGCAAt                              <  1:44535/146‑1 (MQ=255)                                                                                                                      gCCGCTGTTGCAGCAGACGGAAATGACCGTCAAACAGCGGCTCCGGGAACATCTGCCCCCACGGGCCAGCATCGCGCAGCAGCTGCGCCACTTCCATGGTCATTTCGGCCGGGATCAACTGACCGTCTGATACCACTTCGCCTTGCAAt                              <  1:341959/149‑1 (MQ=255)                                                                                                                           tGTTGCAGCAGACGGAAATGACCGTCAAACAGCGGCTCCGGGAACATCTGCCCCCACGGGCCAGCATCGAGCAGCAGCTGCGCCACTTCCATGGCTATTTCGGCCGGTCTTCACGGACGCTCTAATGCCACTTCGCCTTGCAATAGCGa                         >  1:332875/1‑149 (MQ=255)                                                                                                                                   cagACGGAAATGACCGTCAAACAGCGGCTCCGGGAACATCTGCCCCCACGGGCCAGCATCGCGCAGCAGCTGCGCCACTTCCATGGTCATTTCGGCCGGGCTTAACGGACCGTCTGATACCACTTCGCCTTGCAATAGCGAAGGGTCCa                 <  1:175819/149‑1 (MQ=255)                                                                                                                                     gACGGAAATGACCGTCAAACAGCGGCTCCGGGAACATCTGCCCCCACGGGCCAGCATCGCGCAGCAGCTGCGCCACTTCCATGGTCATTTCGGCCGGGCTTAACGGACCGTCTGATACCACTTCGCCTTGCAATAGCGAAGGGTCCAGc               <  1:555303/149‑1 (MQ=255)                                                                                                                                           aaTGACCGTCAAACAGCGGCTCCGGGAACATCTGCCCCCCCGGGCCAGCATCGCGCAGCAGCTGCGCCACTTCCATGGTCATTTCGGCCGGGCTTAACGGACCGTCTGATACCACTTCGCCTTGCAATAGCGAAGGGTCCAGCCACTCa         <  1:39047/149‑1 (MQ=255)                                                                                                                                                ccGTCAAACAGCGGCTCCGGGAACATCTGCCCCAACGGCCCAGCATCGCGCAGCAGCTGCGCCACTTCCATGGTCATTTCGGCCGGGCTTAACGGACCGTCTGATACCACTTCGCCTTGCAATAGCGAAGGGTCCAGCCACTCAGTAAc    <  1:190521/149‑1 (MQ=255)                                                                                                                                                  gTCAAACAGCGGCTCCGGGAACATCTGCCCCCACGGGCCAGCATCGCGCAGCAGCTGCGCCACTTCCATGGTCATTTCGGCCGGGCTTAACGGACCGTCTGATACCACTTCGCCTTGCAATAGCGAAGGGTCCAGCCACTCAGTAACCa  >  2:268109/1‑149 (MQ=255)                                                                                                                                                     |                                                                                                                                                  CTTCGCGCACGCCGTTATCCGGCCAGAGGGCGGTATCGACATTAAAAGCAATACCATCCAGCAGTGGACCGCCGCCGACCGGTTCGACCATCACCTTCAAATGACGTTCGCCCACCAGCCGCTGTTGCAGCAGACGGAAATGACCGTCAAACAGCGGCTCCGGGAACATCTGCCCCCACGGGCCAGCATCGCGCAGCAGCTGCGCCACTTCCATGGTCATTTCGGCCGGGCTTAACGGACCGTCTGATACCACTTCGCCTTGCAATAGCGAAGGGTCCAGCCACTCAGTAACCA  >  NC_000913_3_pae_pgi/3036459‑3036752

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.