mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913_3_pae_pgi | 526,792 | 0 | A | C | 39.0% | 35.0 / 37.3 | 41 | S1178R (AGC→CGC) | rhsD | Rhs protein with DUF4329 family putative toxin domain; putative neighboring cell growth inhibitor |
| * | NC_000913_3_pae_pgi | 526,796 | 0 | C | G | 39.0% | 44.6 / 47.7 | 41 | A1179G (GCG→GGG) | rhsD | Rhs protein with DUF4329 family putative toxin domain; putative neighboring cell growth inhibitor |
| * | NC_000913_3_pae_pgi | 526,800 | 0 | A | G | 39.0% | 43.3 / 31.7 | 41 | E1180E (GAA→GAG) | rhsD | Rhs protein with DUF4329 family putative toxin domain; putative neighboring cell growth inhibitor |
| * | NC_000913_3_pae_pgi | 4,295,320 | 0 | C | T | 34.1% | 43.9 / 29.4 | 44 | intergenic (+266/+376) | gltP/yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| Marginal new junction evidence (sorted from low to high skew) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913_3_pae_pgi | = 3770645 | 16 (0.680) | 3 (0.130) | 3/272 | 3.1 | 15.7% | coding (735/1137 nt) | yibH | putative membrane fusion protein (MFP) component of efflux pump |
| ? | NC_000913_3_pae_pgi | = 3770654 | 17 (0.760) | coding (726/1137 nt) | yibH | putative membrane fusion protein (MFP) component of efflux pump | |||||
| * | ? | NC_000913_3_pae_pgi | = 2877646 | 24 (1.020) | 3 (0.130) | 3/272 | 3.1 | 10.8% | intergenic (+28/+923) | iap/ygbF | aminopeptidase in alkaline phosphatase isozyme conversion/CRISPR adaptation ssRNA endonuclease |
| ? | NC_000913_3_pae_pgi | = 2877662 | 27 (1.210) | intergenic (+44/+907) | iap/ygbF | aminopeptidase in alkaline phosphatase isozyme conversion/CRISPR adaptation ssRNA endonuclease | |||||
| * | ? | NC_000913_3_pae_pgi | 2505261 = | 31 (1.320) | 4 (0.180) | 3/274 | 3.1 | 12.4% | coding (287/1038 nt) | ypdE | aminopeptidase |
| ? | NC_000913_3_pae_pgi | 2505282 = | 27 (1.200) | coding (266/1038 nt) | ypdE | aminopeptidase | |||||