New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913_3_pae_pgi	= 1702145	70 (0.880)	5 (0.070)	5/258	10.1	6.9%	intergenic (+16/‑88)	malY/add	PLP‑dependent beta‑cystathionase and maltose regulon regulator/adenosine deaminase
	?	NC_000913_3_pae_pgi	= 1702153	70 (0.950)					intergenic (+24/‑80)	malY/add	PLP‑dependent beta‑cystathionase and maltose regulon regulator/adenosine deaminase
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

CAAGAAAAAGTCGCGATCATGCCGGGGTATACCTACGGTGAAGAAGGTCGTGGTTTTGTCCGTCTCAATGCCGGCTGCCCACGTTCGAAACTGGAAAAAGGTGTGGCTGGATTAATTAACGCCATCCGCGCTGTTCGTTAACCCCAATTGCGCAACG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913_3_pae_pgi/1701989‑1702145 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑attgcgcaacgATTTTTTACGTTGCGCAATTGGGGTTAACGAACAGCGCGGATGGCGTTAATTAATCCAGCCACACCTTTTTCCAGTTTCGAACGTGGGCAGCCGGCATTGAGACGGACAAAACCACGACCTTCTTCACCGTAGGTATACCCCGG  <  NC_000913_3_pae_pgi/1702153‑1702010                                                                                                                                                                                                                                                                                                               CAAGAAAAAGTCGCGATCATGCCGGGGTATACCTACGGTGAAGAAGGTCGTGGTTTTGTCCGTCTCAATGCCGGCTGCCCACGTTCGAAACTGGAAAAAGGTGTGGCTGGATTAATTAACGCCATCCGCGCTGTTCGTTAACCCCAATT                                                                                                                                                          >  1:1290222/1‑149  AAGAAAAAGTCGCGATCATGCCGGGGTATACCTACGGTGAAGAAGGTCGTGGTTTTGTCCGTCTCAATGCCGGCTGCCCACGTTCGAAACTGGAAAAAGGTGTGGCTGGATTAATTAACGCCATCCGCGCTGTTCGTTAACCCCAATTG                                                                                                                                                         >  1:1360038/1‑149   AGAAAAAGTCGCGATCATGCCGGGGTATACCTACGGTGAAGAAGGTCGTGGTTTTGTCCGTCTCAATGCCGGCTGCCCACGTTCGAAACTGGAAAAAGGTGTGGCTGGATTAATTAACGCCATCCGCGCTGTTCGTTAACCCCAATTGC                                                                                                                                                        <  2:1086020/149‑1   AGAAAAAGTCGCGAACATGCCGGGGTATACCTACGGTGAAGAAGGTCGTGGTTTTGTCCGTCTCAATGCCGGCTGCCCACGTTCGAAACTGGAAAAAGGTGTGGCTGGATTAATTAACGCCATCCGCGCTGTTCGTTAACCCCAATTGC                                                                                                                                                        <  1:1358050/149‑1                       gGGGGTCTATCAACGGTGAAGAAGGGCGTGGTTTTGTCCGTCTCAATCCCGGCTGCACACGTGCGAAACTGGAAAAAGGTGTGGCTGGATTAATTAACGCCATCCGCGCTGTTCGTTAACCCCAATTGCGCAACGATTTTTTACGTTGC                                                                                                                                    <  2:459934/148‑1                                         AAGAAGGTCGTGGTTTTGTCCGTCTCAATGCCGGCTGCCCACGTTCGAAACTGGAAAAAGGTGTGGCTGGATTAATTAACGCCATCCGCGCTGTTCGTTAACCCCAATTGCGCAAC                                                                                                                                                   >  1:567988/1‑116                                         AAGAAGGTCGTGGTTTTGTCCGTCTCAATGCCGGCTGCCCACGTTCGAAACTGGAAAAAGGTGTGGCTGGATTAATTAACGCCATCCGCGCTGTTCGTTAACCCCAATTGCGCAAC                                                                                                                                                   <  2:567988/116‑1                                                                           CTGCCCACGTTCGAAACTGGAAAAAGGTGTGGCTGGATTAATTAACGCCATCCGCGCTGTTCGTTAACCCCAATTGCGCAACGATTTTTTACGTTGCGCAATTGGGGT                                                                                                                         >  1:866199/1‑108                                                                           CTGCCCACGTTCGAAACTGGAAAAAGGTGTGGCTGGATTAATTAACGCCATCCGCGCTGTTCGTTAACCCCAATTGCGCAACGATTTTTTACGTTGCGCAATTGGGGT                                                                                                                         <  2:866199/108‑1                                                                                       GAAACTGGAAAAAGGTGTGGCTGGATTAATTAACGCCATCCGCGCTGTTCGTTAACCCCAATTGCGCAACGATTTTTTACGTTGCGCAATTGGG                                                                                                                           >  1:804687/1‑94                                                                                       GAAACTGGAAAAAGGTGTGGCTGGATTAATTAACGCCATCCGCGCTGTTCGTTAACCCCAATTGCGCAACGATTTTTTACGTTGCGCAATTGGG                                                                                                                           <  2:804687/94‑1                                                                                                                                                         CAACGATTTTTTACGTTGCGCAATTGGGGTTAACGAACAGCGCGGATGGCGTTAATTAATCCAGCCACACCTTTTTCCAGTTTCGAACGTGGGCAGCCGGCATTGAGACGGACAAAACCACGACCTTCTTCCCCGTAGGTCTACCCCGG  >  2:482462/1‑149                                                                                                                                                          AACGATTTTTTACGTTGCGCAATTGGGGTTAACGAACAGCGCGGATGGCGTTAATTAATCCAGCCACACCTTTTTCCAGTTTCGAACGTGGGCAGCCGGCATTGAGACGGACAAAACCACGA                            <  1:1167176/122‑1                                                                                                                                                          AACGATTTTTTACGTTGCGCAATTGGGGTTAACGAACAGCGCGGATGGCGTTAATTAATCCAGCCACACCTTTTTCCAGTTTCGAACGTGGGCAGCCGGCATTGAGACGGACAAAACCACGA                            >  2:1167176/1‑122                                                                                                                                                                                                                                                                                                               CAAGAAAAAGTCGCGATCATGCCGGGGTATACCTACGGTGAAGAAGGTCGTGGTTTTGTCCGTCTCAATGCCGGCTGCCCACGTTCGAAACTGGAAAAAGGTGTGGCTGGATTAATTAACGCCATCCGCGCTGTTCGTTAACCCCAATTGCGCAACG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913_3_pae_pgi/1701989‑1702145 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑attgcgcaacgATTTTTTACGTTGCGCAATTGGGGTTAACGAACAGCGCGGATGGCGTTAATTAATCCAGCCACACCTTTTTCCAGTTTCGAACGTGGGCAGCCGGCATTGAGACGGACAAAACCACGACCTTCTTCACCGTAGGTATACCCCGG  <  NC_000913_3_pae_pgi/1702153‑1702010

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.