New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913_3_pae_pgi	3106981 =	29 (0.990)	4 (0.150)	4/260	3.5	13.2%	intergenic (+11/+39)	nupG/speC	nucleoside transporter/ornithine decarboxylase, constitutive
	?	NC_000913_3_pae_pgi	3107013 =	26 (0.960)					intergenic (+43/+7)	nupG/speC	nucleoside transporter/ornithine decarboxylase, constitutive
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

GCACTGGAAGAAGGGGTGAATTTGTTGCCGGGATTTTCGCCGGAGCTGCAAGGTGTTTATAGCGAAACCGATGCGGATGGCGTGAAACGGTTGTACGGTTATGTGTTGAAGTAAGAATAAAAAAAACGGGTCACCTTCTGGCGACCCGTTTTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913_3_pae_pgi/3107133‑3106981 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gacccgtttttTTTATTCTTACTTCAACACATAACCGTACAACCGTTTCACGCCATCCGCATCGGTTTCGCTATAAACACCTTGCAGCTCCGGCGAAAATCCCGGCAACAAATTCACCCCTTCTTCCAGTGCAAGGAAATAACGTTGAACCGCCCCACC  >  NC_000913_3_pae_pgi/3107013‑3107160                                                                                                                                                                                                                                                                                                               gtgCTGGAAGGAGGGGGGAATTTGTTGCCGGGATGGTCGCCGGAGCTGGAAGGTGTTTATAGCGAAACCGATGCGGATGGCGTGAAACGGTTGTACGGTTATGTGTTGAAGTAAGAATAAAAAAAACGGGTCACCTTCTGGCGACCCGT                                                                                                                                                          <  1:330167/146‑1   ACTGGAAGAAGGGGTGAATTTGTTGCCGGGATTTTCGCCGGAGCTGCAAGAGGTTTATAGCGAAACCGATGCGGATGGCGTGAAACGGTTGTACGGTTATGTGTTGATGTAAGAATAAACACAGCCGCTCACCTTCTGGCGGCCCGTTT                                                                                                                                                        >  2:150920/1‑149    CTGGAAGAAGGGGTGAATTTGTTGCCGGGATTTTCGCCGGAGCTGCAAGGTGTTTATAGCGAAACCGATGCGGATGGCGTGAAACGGTTGTACGGTTATGTGTTGAAGTAAGAATAAAAAAAACGGGTCACCTTCTGGCGACCCGTTTT                                                                                                                                                       >  1:173440/1‑149                                                                                                                TAAGAATAAAAAAAACGGGTCACCTTCTGGCGACCCGTTTTTTTTATTCTTACTTCAACACATAACCGTACAACCGTTTCACGCCATCCGCATCGGTTTCGCTATAAACACCTTGCAGCTCCGGCGAAAATCCCGGCAACAAATTCACC                                           >  2:260263/1‑149                                                                                                                    AATAAAAAAAACGGGTCACCTTCTGGCGACCCGTTTTTTTTATTCTTACTTCAACACATAACCGTACAACCGTTTCACGCCATCCGCATCGGTTTCGCTATAAACACCTTGCAGCTCCGG                                                                    <  1:182470/120‑1                                                                                                                    AATAAAAAAAACGGGTCACCTTCTGGCGACCCGTTTTTTTTATTCTTACTTCAACACATAACCGTACAACCGTTTCACGCCATCCGCATCGGTTTCGCTATAAACACCTTGCAGCTCCGG                                                                    >  2:182470/1‑120                                                                                                                                  GTCACCTTCTGGCGACCCGTTTTTTTTATTCTTACTTCAACACATAACCGTACAACCGTTTCACGCCATCCGCATCGGTTTCGCTATAAACACCTTGCAGCTCCGGCGAAAATCCCGGAAACAAATTCACCCCTTCTTCCAGTGCAAGG                         >  2:302087/1‑149                                                                                                                                                ACCCGTTTTTTTTATTCTTACTTCAACACATAACCGTACAACCGTTTCACGCCATCCGCATCGGTTTCGCTATAAACACCTTGCAGCTCAGATATTAAGCCCTGCAACAAATTCACCCCTTCTTCCAGTGCAAGGAAATAACGTTGAAC           >  1:250719/1‑149                                                                                                                                                ACCCGTTTTTTTTATTCTTACTTCAACACATAACCGTACAACCGTTTCACGCCATCCGCATCGGTTTCGCTATAAACACCT                                                                               >  1:70309/1‑81                                                                                                                                                ACCCGTTTTTTTTATTCTTACTTCAACACATAACCGTACAACCGTTTCACGCCATCCGCATCGGTTTCGCTATAAACACCT                                                                               <  2:70309/81‑1                                                                                                                                                         TTTTATTCTTACTTCAACACAGAACCGTACAACCGTTTCACGCCATCCGCATCGGTTTCGCTAGAAACACCTTGCAGCTCCGGCGAAAATCCCGGCAACAAATTCACCCCTTCTTCCAGCGCAAGGAAATAACGTTGCACCGCCCCACC  <  2:468457/149‑1                                                                                                                                                                                                                                                                                                               GCACTGGAAGAAGGGGTGAATTTGTTGCCGGGATTTTCGCCGGAGCTGCAAGGTGTTTATAGCGAAACCGATGCGGATGGCGTGAAACGGTTGTACGGTTATGTGTTGAAGTAAGAATAAAAAAAACGGGTCACCTTCTGGCGACCCGTTTTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913_3_pae_pgi/3107133‑3106981 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gacccgtttttTTTATTCTTACTTCAACACATAACCGTACAACCGTTTCACGCCATCCGCATCGGTTTCGCTATAAACACCTTGCAGCTCCGGCGAAAATCCCGGCAACAAATTCACCCCTTCTTCCAGTGCAAGGAAATAACGTTGAACCGCCCCACC  >  NC_000913_3_pae_pgi/3107013‑3107160

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.