New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913_3_pae_pgi	3106981 =	29 (0.990)	4 (0.150)	4/260	3.5	13.2%	intergenic (+11/+39)	nupG/speC	nucleoside transporter/ornithine decarboxylase, constitutive
	?	NC_000913_3_pae_pgi	3107013 =	26 (0.960)					intergenic (+43/+7)	nupG/speC	nucleoside transporter/ornithine decarboxylase, constitutive
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

CGCTGGTTACTCCGTGGTTCTGGCCTTCGCGTTCATGGCGATGTTCAAATATAAACACGTTCGTGTCCCGACAGGCACACAGACGGTTAGCCACTAATTACGCAAAGAAAAACGGGTCGCCAGAAGGTGACCCGTTTTTTTTATTCTTACTTCAACACATAACCGTACAACCGTTTCACGCCATCCGCATCGGTTTCGCTATAAACACCTTGCAGCTCCGGCGAAAATCCCGGCAACAAATTCACCCCTTCTTCCAGTGCAAGGAAATAACGTTGAACCGCCCCACC  >  NC_000913_3_pae_pgi/3106874‑3107160                                                                                                                                            |                                                                                                                                                    cGCTGGTTACTCCGTGGTTCTGGCCTTCGCGTTCATGGCGATGTTCAAATATAAACATGTTCGTGTCCCGACAGGCACACAGACGGTTAGCCACTAATTACGCAAAGAAAAACGGGTCGCCAGAAGGTGACCCGTTTTTTTTATTCTTa                                                                                                                                            <  1:489362/149‑1 (MQ=255)    tGGTGACTCCGTGGTGCTGGCCGTCGCGTTCATGGCGATGTTCAAATATAAACACGTTCGTGTCCCGACAGGCACACAGACGGTTAGCCACTAATTACGCAGAGAAAAACGGGGCACCCGAAGGCGACCCGTTTTTTTTATTCTTACtt                                                                                                                                         >  2:461509/1‑149 (MQ=255)           tCCGTGGTTCTGGCCTTCGCGTTCATGGCGATGTTCAAATATAAACACGTTCGTGTCCCGACAGGCACACAGACGGTTAGCCACTAATTACGCAAAGAAAAACGGGTCGCCAGAAGGTGACCCGTTTTTTTTATTCTTACTTCAAcaca                                                                                                                                  >  2:173440/1‑149 (MQ=255)             cGTGGTTCTGGCCTTCGCGTTCATGGCGATGTTCAAATATAAACACGTTCGTGTCCCGACAGGCACACAGACGGTTAGCCACTAATTACGCAAAGAAAAACGGGTCGCCAGAAGGTGACCCGTTTTTTTTATTCTTACTTCAACACATa                                                                                                                                >  2:14009/1‑149 (MQ=255)                 gTTCTGGCCTTCGCGTTCATGGCGATGTTCAAATATAAACACGTTCGTGTCCCGACAGGCACACAGACGGTTAGCCACTAATTACGCAAAGAAAAACGGGTCGCCAGAAGGTGACCCGTTTTTTTTATTCTTACTTCACCACATAACCg                                                                                                                            >  2:415995/1‑149 (MQ=255)                         cTTCGCGTTCATGGCGATGTTCAAATATAAACACGTTCGTGTCCCGACAGGCACACAGACGGTTAGCCACTAATTACGCAAAGAAAAACGGGTCGCCAGAAGGTGACCCGTTTTTTTTATTCTTAATTCAACACATAACCGTACAACCg                                                                                                                    >  2:437024/1‑149 (MQ=255)                          ttCGCGTTCATGGCGATGTTCAAATATAAACACGTTCGTGTCCCGACAGGCACACAGACGGTTAGCCACTAATTACGCAAAGAAAAACGGGTCGCCAGAAGGTGACCCGTTTTTTTTATTCTTACTTCAACACATAACCGAACAACCGt                                                                                                                   >  2:406553/1‑149 (MQ=255)                                               aaaTATCAACACGTTCGTGTCCCGACAGGCACACAGACGGTTAGCCACTAATTACGCAAAGAAAAACGGGTCGCCAGAAGGTGACCCGTTTTTTTTATTCTTACTTCAaca                                                                                                                                    <  1:456053/111‑1 (MQ=255)                                               aaaTATAAACACGTTCGTGTCCCGACAGGCACACAGACGGTTAGCCACTAATTACGCAAAGAAAAACGGGTCGCCAGAAGGTGACCCGTTTTTTTTATTCTTACTTCAaca                                                                                                                                    >  2:456053/1‑111 (MQ=255)                                                aaTATAAACACGTTCGTGTCCCGACAGGCACACAGACGGTTAGCCACTAATTACGCAAAGAAAAACGGGTCGCCAGAAGGTGACCCGTTTTTTTTATTCTTACTTCAACACATAACCGTACAACCGTTTCACGCCATCCGCATCGGttt                                                                                             <  1:245373/149‑1 (MQ=255)                                                aaTATAAACACGTTCGTGTCCCGACAGGAACACAGACGGTTAGCCACTAATTACGCAAAGAAAAACGGGTCGCCAGAAGGTGACCCGTTTTTTTTATTCTTACTTCAACACATAACCGTACAACCGTTTCACGCCATCCGCATCGGttt                                                                                             <  1:366016/149‑1 (MQ=255)                                                             tCGTGTCCCGACAGGCACACAGACGGTTAGCCACTAATTACGCAAAGAAAAACGGGTCGCCAGAAGGTGACCCGTTTTTTTTATTCCTACTTCTTCTCATAACCGTACAACCGTTTCACGCCATCCGCATCGGTTTCGCTATAAACAcc                                                                                <  1:406553/149‑1 (MQ=255)                                                                    ccGACAGGCACACAGACGGTTAGCCACTAATTACGCAAAGAAAAACGGGTCGCCAGAAGGTGACCCGTTTTTTTTATTCTTACTTCAACACATAACCGTACACCCGTTTCACGCCATCCGCCTCGGTTTCGCTATAAACACCTTGCAGc                                                                         >  1:227859/1‑149 (MQ=255)                                                                     cGACAGGCACACAGACGGTTAGCCACTAATTACGCAAAGAAAAACGGGTCGCCAGAAGGTGACCCGTTTTTTTTATTCTTACCTCAACACATAACCGTACAACCGTTCCACGCCATCCGCATCGGTTTCCCTATAAAAACCTcgccgcc                                                                        >  2:92459/1‑148 (MQ=255)                                                                       aCAGACACATAGACTGTTAGCCACTAATTACGCAAAGAAAAACGGGTCGCCAGAAGGTGACCCGTTTTTTTTATTCTTACTTCAACACATAACCGTACAACCGTTTCACGCCATCCACATCGGTTTCGCTATACACACCTCGCCGCTcc                                                                      >  2:511713/1‑149 (MQ=255)                                                                           gCACACAGACGGTTAGCCACTAATTACGCAAAGAAAAACGGGTCGCCAGAAGGTGACCCGTTTTTTTTATTCTTACTTCAACACATAACCGTACAACCGTTTCACGCCATCCGCATCGGTTTCGCTATAAACACCTTGCAGCTccgccg                                                                  >  2:289349/1‑149 (MQ=255)                                                                               acaGACGGTTAGCCACTAATTACGCAAAGAAAAACGGGTCGCCAGAAGGTGACCCGTTTTTTTTATTCTTACTTCAACACATAACCGTACAAc                                                                                                                      >  2:190918/1‑93 (MQ=255)                                                                               acaGACGGTTAGCCACTAATTACGCAAAGAAAAACGGGTCGCCAGAAGGTGACCCGTTTTTTTTATTCTTACTTCAACACATAACCGTACAAc                                                                                                                      <  1:190918/93‑1 (MQ=255)                                                                                 aGACGGTTAGCCACTAATGACGCAAAGAAAAACGGGTCGCCAGAAGGTGACCCGTTTTTTTTATTCTTACTTCAACACATAACCGTACAACCGTTTCACGCCATCCGCATCGGTTTCGCTATAAACACCTTGCAGCTCCGGCGAAAATc                                                            <  1:49721/149‑1 (MQ=255)                                                                                                    aCGCAAAGAAAAACGGGTCGCCAGAAGGAGACCCGTTTTTTTTATTCTTACTTCAACACATAACCGTACAACCGTTTCACGCCATCCGCATCGGTTTCGCTATAAACACCTTGCAGCTCCGGCGAAAGTCCCGGCACCAAATTcccccc                                         >  1:147871/1‑149 (MQ=255)                                                                                                          aGAAAAACGGGTCGCCAGAAGGTGACCCGTTTTTTTTATTCTTACTTCAACACATAACCGTACAACCGTTTCACGCCATCCGCATCGGTTTCGCTATAAACACCTTGCAGCTCCGGCGAAAATCCCGGCAACAAATTCACCCCttcttc                                   <  1:14009/149‑1 (MQ=255)                                                                                                             aaaaCGGGTCGCCAGAAGGTGACCCGTTTTTTTTATTCTTACTTCAACACATAACCGTACAACCGTTTCACGCCATCCGCATCGGTTTCGCTATAAACACCTTGCAGCTCCGGCGAAAATCCCGGCAACAAATTCACCCCTTCTTCCAg                                <  1:173440/149‑1 (MQ=255)                                                                                                              aaaCGGGCCGCCAGAAGGTGAGCGGCTGTGTTTATTCTTACATCAACACATAACCGTACAACCGTTTCACGCCATCCGCATCGGTTTCGCTATAAACCTCTTGCAGCTCCGGCGAAAATCCCGGCAACAAATTCACCCCTTCTTCCAGt                               <  2:150920/149‑1 (MQ=255)                                                                                                                aCGGGTCGCCAGAAGGTGACCCGTTTTTTTTATTCTTACTTCAACACATAACCGTACAACCGTTTCACGCCATCCGCATCGGTTTCGCTATAAACACCTTCCAGCTCCGGCGACCATCCCGGCAACAAATTCCCCCCTCCTTCCAgcac                             >  1:330167/1‑146 (MQ=255)                                                                                                                         cAGAAAGTGACCCATTTTTTCTATGCTTACTTCAACACATCACCGTAAAACCGTTTCACGCCATCCGCATCAGATTCGATATAAACACCTTGCAGCTCCGGCGAAAATCCCCGCAACAAAACCACCCCTTCTGCACGTCCACGGAAATa                    >  2:237848/1‑149 (MQ=255)                                                                                                                             aGGTGACCCGTTTTTTTTATTCTTACTTCAACACATAACCGTACAACCGTTTCACGCCATCCGCATCGGTTTCGCTATAAACACCTTGCAGCTCCGGCGAAAATCCCGGCAACAAATTCACCCCTTCTTCCAGTGCAAGGAAATAACGt                <  1:431631/149‑1 (MQ=255)                                                                                                                                  aCCCGTTTTTTTTATTCTTACTTCAACACATAACCGTACAACCGTTTCACGCCATCCGCATCGGTTTCGCTATAAACACCt                                                                               >  1:70309/1‑81 (MQ=255)                                                                                                                                  aCCCGTTTTTTTTATTCTTACTTCAACACATAACCGTACAACCGTTTCACGCCATCCGCATCGGTTTCGCTATAAACACCt                                                                               <  2:70309/81‑1 (MQ=255)                                                                                                                                  aCCCGTTTTTTTTATTCTTACTTCAACACATAACCGTACAACCGTTTCACGCCATCCGCATCGGTTTCGCTATAAACACCTTGCAGCTCAGATATTAAGCCCTGCAACAAATTCACCCCTTCTTCCAGTGCAAGGAAATAACGTTGAAc           >  1:250719/1‑149 (MQ=255)                                                                                                                                           ttttATTCTTACTTCAACACAGAACCGTACAACCGTTTCACGCCATCCGCATCGGTTTCGCTAGAAACACCTTGCAGCTCCGGCGAAAATCCCGGCAACAAATTCACCCCTTCTTCCAGCGCAAGGAAATAACGTTGCACCGccccacc  <  2:468457/149‑1 (MQ=255)                                                                                                                                            |                                                                                                                                                    CGCTGGTTACTCCGTGGTTCTGGCCTTCGCGTTCATGGCGATGTTCAAATATAAACACGTTCGTGTCCCGACAGGCACACAGACGGTTAGCCACTAATTACGCAAAGAAAAACGGGTCGCCAGAAGGTGACCCGTTTTTTTTATTCTTACTTCAACACATAACCGTACAACCGTTTCACGCCATCCGCATCGGTTTCGCTATAAACACCTTGCAGCTCCGGCGAAAATCCCGGCAACAAATTCACCCCTTCTTCCAGTGCAAGGAAATAACGTTGAACCGCCCCACC  >  NC_000913_3_pae_pgi/3106874‑3107160

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.