New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913_3_pae_pgi	3221823 =	24 (0.820)	5 (0.180)	4/266	3.5	15.2%	coding (358/984 nt)	ebgR	transcriptional repressor
	?	NC_000913_3_pae_pgi	3221880 =	33 (1.190)					coding (415/984 nt)	ebgR	transcriptional repressor
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

GATATAGAAGTCGATGATTTCTTTACTGATGCGTGCCAGATCGATATCCACCGCATCGTAACCGCTGCCGGGTTCGTGAAAGTCGATAAAACAGATATTGTCGGTCAACGCGCTGGCAGCGGCGCGCAGGGCGGGCGTGGGTTTGCCGACAAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913_3_pae_pgi/3221975‑3221823 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccgacaatATCTGTTTTATCGACTTTCACGAACCCGGCAGCGGTTACGATGCGGTGGATATCGATCTGGCACGCATCAGTAAAGAAATCATCGACTTCTATATCAACCAGGGCGTTAATCGTATTGGTTTTATTGGCGGTGAAGATGAGCCTG  >  NC_000913_3_pae_pgi/3221880‑3222024                                                                                                                                                                                                                                                                                                            GATATAGAAGTCGATGATTTCTTTACTGATGCGTGCCAGATCGATATCCACCGCATCGTAACCGCTGCCGGGTTCGTGAAAGTCGATAAAACAGATATTGTCGGTCAACGCGCTGGCAGCGGCGCGCAGGGCGGGCGTGGGTTTGCCGc                                                                                                                                                       >  1:375843/1‑148    ATAGGAGTCTATGATTTCTTTACTGATGCGTGCCAGATCGATAGCCACCGCATCGTAACCGCTGCCGGGTTCGTGAAAGTCGATAAAACAGATATTGTCGGTCAACGCGCTGGCAGCGGCGCGCCGGGCGGGCGTGGGTTTGCCGACAA                                                                                                                                                    <  2:125577/149‑1      AGAAGTCGATGATTTCTTTACTGATGCGTGCCAGATCGATATCCACCGCATCGTGACCGCTGCCGGGTTCGTGAAAGTCGATAAAACAGATATTGTCGGTCAACGCGCTGGCAGCGGCGCGCAGGGCGGGCGTGGGTTTGCCGcccgct                                                                                                                                                  >  2:515039/1‑143                                                CCACCGCATCGTAACCGCTGCCGGGTTCGTGAAAGTCGATAAAACAGATATTGTCGGTCAACGCGCTGGCAGCGGCGCGCAGGGCGGGCGTGGGTTTGC                                                                                                                                                          >  1:7389/1‑99                                                CCACCGCATCGTAACCGCTGCCGGGTTCGTGAAAGTCGATAAAACAGATATTGTCGGTCAACGCGCTGGCAGCGGCGCGCAGGGCGGGCGTGGGTTTGC                                                                                                                                                          <  2:7389/99‑1                                                                             TGAAAGTCGATAAAACAGATATTGTCGGTCAACGCGCTGGCAGCGGCGCGCAGGGCGGGCGTGGGTTTGCCGACAAT                                                                                                                                                   <  1:168913/77‑1                                                                             TGAAAGTCGATAAAACAGATATTGTCGGTCAACGCGCTGGCAGCGGCGCGCAGGGCGGGCGTGGGTTTGCCGACAAT                                                                                                                                                   >  2:168913/1‑77                                                                                          AACAGATATTGTCGGTCAACGCGCTGGCAGCGGCGCGCAGGGCGGGCGTGGGTTTGCCGACAATATCTGTTTTATCGACTTTCACGAACCCGGCAGCGGTTACGATGCGGTGGATATCGATCTGGCACGCATCAGTAAAGAAATCATCG                                                              >  2:13345/1‑149                                                                                              GATATTGTCGGTCAACGCGCTGGCAGCGGCGCGCAGGGCGGGCGTGGGTTTGCCGACAATATCTGTTTTATCGACTTTCACGAACCCGGCAGCGGTTACGATGCGGTGGATATCGATCTGGCACGCATCAGTAAAGAAATCATCGACTT                                                          >  2:39154/1‑149                                                                                                                          GCGCGCAGGGCGGGCGTGGGTTTGCCGACAATATCTGTTTTATCGACTTTCACGAACCCGGCAGCGGTTACGATGCGGTGGATATCGATCTGGCACGCATCAGTAAAGAAATCATCGACTTCTATATCAACCAGGGCGTTAATCGTATT                              <  1:39154/149‑1                                                                                                                                   GCGGGCGTGGGTTTGCCGACAATATCTGTTTTATCGACTTTCACGAACCCGGCAGCGGTTACGATGCGGTGGATATCGATCTGGCACGCATCAGTAAAGAAATCATCGACTTCTATATCAACCAGGGCGTTAATCGTATTGGTTTTATT                     <  1:13345/149‑1                                                                                                                                             GTTGGCCGACAATATCTGCATTATCCACTTTCACGAACCCGGCAGCGGTTACGATGCGGTGGATATCGATCTGGCACGCATCAGTAAAGAAATCATCGACTTCTATATCAACCAGGGCGTTAATCGTATTGGTTTTATTGGCGGTGAAG           >  2:500780/1‑149                                                                                                                                                   CGACAATATCTGTTTTATCGACTTTCACGAACCCGGCAGCGGTTACGATGCGGTGGATATCGATCTGGCACGCATCAGTAAAGAAATCATCGACTTCTATATCAACCAGGGCGTTAATCGTATTGGTTTTATTGGCGGTGAAGATGAGC     <  1:56510/149‑1                                                                                                                                                      CAATATCTGTTTTATCGACTTTCACGAACCCGGCAGCGGTTACGATGCGGTGGATATCGATCTGGCACGCATCAGTAAAGAAATCATCGACTTCTACATCAACCAGGGCGTTAATCGTATTGGTTTTATTGGCGGTGAAGATGAGCCTG  <  1:416054/149‑1                                                                                                                                                                                                                                                                                                            GATATAGAAGTCGATGATTTCTTTACTGATGCGTGCCAGATCGATATCCACCGCATCGTAACCGCTGCCGGGTTCGTGAAAGTCGATAAAACAGATATTGTCGGTCAACGCGCTGGCAGCGGCGCGCAGGGCGGGCGTGGGTTTGCCGACAAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913_3_pae_pgi/3221975‑3221823 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccgacaatATCTGTTTTATCGACTTTCACGAACCCGGCAGCGGTTACGATGCGGTGGATATCGATCTGGCACGCATCAGTAAAGAAATCATCGACTTCTATATCAACCAGGGCGTTAATCGTATTGGTTTTATTGGCGGTGAAGATGAGCCTG  >  NC_000913_3_pae_pgi/3221880‑3222024

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.