New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913_3_pae_pgi	59616 =	39 (1.330)	5 (0.180)	5/264	3.1	11.8%	intergenic (+337/+71)	yabP/rluA	pseudogene, pentapeptide repeats‑containing/dual specificity 23S rRNA pseudouridine(746), tRNA pseudouridine(32) synthase, SAM‑dependent
	?	NC_000913_3_pae_pgi	59638 =	38 (1.380)					intergenic (+359/+49)	yabP/rluA	pseudogene, pentapeptide repeats‑containing/dual specificity 23S rRNA pseudouridine(746), tRNA pseudouridine(32) synthase, SAM‑dependent
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

CAGACCCGTTAAAATGAAATATAAGAGACGGTCAACGGGTGAAGAAAAAGTTC‑AAAAATTCGCTGTGGAGCAGGAAGGGAATTACCGAATGGAAAGCGTAGCCACACGCAACAACTGAAAGCAGTTTGGCAGAAACAAAAAATCCCCGGACTCGGGGATTTATGTACAAGAGGCAGCCCTTAGGATGAGGGTATAAACGTACAGGAAAGGTTAAAAATCCGCTGGCGCTTTAAACGTCATACTATTGCCATACGCCGGATGGGTAATCGTCAACATCTCTGCATGTA  >  NC_000913_3_pae_pgi/59477‑59763                                                                                                                                             |                                                                                                                                                    cAGACCCGTTAAAATGAAATATAAGAGACGGCCAACGGGTGCAGAAAAAGTTC‑AAAAATTCGCTGTGGAGCAGGAAGGGAATTACCGAATGGAAAGCGTAGCCACACGCAACAACTGAAAGCAGTTTGACAAAAACAAAACATCCCCgg                                                                                                                                            >  2:481604/1‑149 (MQ=255)  aGACCCGTTAAAATGAAATATAAGAGACGGTCAACGGGTGAAGAAAAAGTTC‑AAAAATTCGCTGTGGAGCAGGAAGGGAATTACGGAATGGAAAGCGTAGCCACACGCAACAACTGAAAGCAGTTTGGCAGAAACAAAACATCCCCGGa                                                                                                                                           >  2:415070/1‑149 (MQ=255)       cGTTAAAATGAAATATAAGACACGGTCAACGGGTGAAGAAAAAGTTC‑AAAAATTCGCTGAGGAGCAGGAAGGGAATTACCGAATGGAAAGCGTAGCCACACGCAAACACTGAAAGCAGTATGGCAGAAACAAAAAATCCCAGGACTCgg                                                                                                                                      >  2:315177/1‑149 (MQ=255)                 caaTAAAAGAGTCGGTCAACGGGTGAACAAAAAGTTC‑AAAACTTCGCCGGTGAGCAGGAAGGGAATTACCGAATGGAAAGCGTAGCCACACGCAACAACTGAAAGCAGTTTGGCAGAAACAAAAAATCCCCGGACTCGGGGATTTATGt                                                                                                                            <  1:40726/148‑1 (MQ=255)                                         gaagaaAAAGTTC‑AAAAATTCACTGTGGAGCAGGAAAGGAATTACCGAATGGAAAGCGTAGCAAAACGAAACAACTTTAAGCATTTGTGCAGAAACAAGAATTCCCCGCACTCGGGGATTTATGTACAAGAAGCAGCCCTTAGGACGAg                                                                                                    >  2:57438/1‑149 (MQ=255)                                          aagaaAAAGTTC‑AAAAATTCGCTGTGGAGCAGGAAGGGAATTACCGAATGGAAAGCGTAGCCACACGCAACAACTGAAAGCAGTTTGGCAGAAACAAAAAATCCCCGGACTCGGGGATTTATGTACAAGAGGCAGCCCTTAGGATGAgg                                                                                                   <  2:161590/149‑1 (MQ=255)                                             aaaaaGTTC‑AAAAATTCGCTGTGGAGCAGGAAGGGAATTACCGAATGGAAAGCGTAGCCACACGCAACAACTGAAAGCAGTTTGGCAGAAACAAAAAATCCCCGGACTCGGGGATTTATGTACAAGAGGCAGCCCTTAGGATGAGGGta                                                                                                >  1:59939/1‑149 (MQ=255)                                              aaaaATTCAAAAAATACGCTGCGGAGGAGGAAGGGAATTACCGAATGGAAAGCGTAGCCACACGCAACCACCGAAAGCAGTTAAAAAAAAAAAAAAAATCCCCGGACTCGGGGATTTATGTACAAGAGGCAGCCCTTAGGATGAGGGta                                                                                                <  2:406842/149‑1 (MQ=255)                                                  tttC‑AAAAATTCGCTGTGGAGCAGGAAGGGAATTACCGAATGGAAAGCGGAGCCACACGCAACAACTGAAAGCAGTTTGGCAGAAACAAAAAATCCCCGGACTCGGGGATTTATGTACAAGAGGCAGCCCTTAGGATGAGGGTATAAAc                                                                                           <  2:419323/148‑1 (MQ=255)                                                  gTTC‑AAAAATGCGCTGTGGAGCAGGAAGGGAATTACCGAATGGAAAGCGTAGCCACACGCAACAACTGAAAGCAGTTTGGCAGAAACAAAAAATCCCCGGACTCGGGGATTTATGTACAAGAGGCAGCCCTTAGGATGAGGGTATAAAc                                                                                           <  1:137624/149‑1 (MQ=255)                                                       aaaaaTTCGCTGTGGAGCAGGAAGGGAATTACCGAATGGAAAGCGTAGCCACACGCAACAACTGAAAGCAGTTTGGCAGAAACAAAAAATCCCCGGACTCGGGGATTTATGTACAAGAGGCAGCCCTCAGGCTAAGGGTATAACCGtca                                                                                       >  1:199431/1‑147 (MQ=255)                                                            ttCGCTGTGGAGCAGGAAGGGAATTACCGAATGGAAAGCGTAGCCACACGCAACAACTGAAAGCAGTTTGGCAGAAACAAAAAATCCCCGGACTCGGGGATTTATGTACAAGAGGCAGCCCTTAGGCTGAGGCTGTAAACGTACAGGaa                                                                                  >  2:378550/1‑149 (MQ=255)                                                            ttCGCTGTGGAGCAGGAAGGGAATTACCGAATGGAAAGCGTAGCCACACGCAACAACTGAAAGCAGTTTGGCAGAAACAAAAAATCCCCGGACTCGGGGATTTATGTACAAGAGGCAGCCCTTAGGATGAGGGTATAAACGTACAGGaa                                                                                  <  1:159175/149‑1 (MQ=255)                                                             tCGCTGTGGAGCAGGAAGGGAATTACCGAATGGAAAGCGTAGCCACACGCAACAACTGAAAGCAGTTTGGCAGAAACAAAAAATCCCCGGACTCGGGGATTTATGTACAAGAGGCAGCCCTTAGGATGAGGGTATAAACGTACAGGaaa                                                                                 <  1:117170/149‑1 (MQ=255)                                                                cTGTGGATCAGGAAGGGAATTACCGAATGGAAACCGTAGCCACACGCAACAACTGAAAGCAGTTTGTCACAAACTAAAAATCCCCGGACTCGGGGATTTATGTACAAGAGGCAGCCCTTAGGATGAGGGTATAAACGTACAGGAAAGGt                                                                              <  1:225949/149‑1 (MQ=255)                                                                cTGTGGAGCAGGAAGGGAATTACCGAATGGAAAGCGTAGCCACACGCAACAACTGAAAGCAGTTTGGCAGAAACAAAAAATCCCCGGACTCGGGGATTTATGTACAAGAGGCAGCCCTTAGGATGAGGGTATAAACGTACAGGAAAGGt                                                                              >  2:146678/1‑149 (MQ=255)                                                                  gtgGAGCAGGAAGGGAATTACCGAATGGAAAGCGTAGCCACACGCAACAACTGAAAGCAGTTTGGCAGAAACAAAAAATCCCCGGACTCGGGGCTTTATGt                                                                                                                            <  2:295128/101‑1 (MQ=255)                                                                  gtgGAGCAGGAAGGGAATTACCGAATGGAAAGCGTAGCCACACGCAACAACTGAAAGCAGTTTGGCAGAAACAAAAAATCCCCGGACTCGGGGATTTATGt                                                                                                                            >  1:295128/1‑101 (MQ=255)                                                                           gAAGGGAATTACCGAATGGGAAGCGTAGCCACACGCAACAACTGAAAGCAGTTTGGCAGAAACAAAAAATCCCCGGACTCGGGGATTTATGTACAAGAGGCAGCCCTTAGGATGAGGGTATAAACGTACAGGAAAGGTTCAAAATCCGc                                                                   >  2:437483/1‑149 (MQ=255)                                                                               ggAATTACCGAATGGAAAGCGTCGGCCCGCGGAACAACTGAAAGCAGTTTGGCAGAAACAAAAAATCCCCGGACTCGGGGGTTTATGTACAAGAGGCAGCCCTGAGGATGAGGGTATAAACGTACAGGCAAGTGTACAAATCCGCTGgc                                                               >  2:4545/1‑149 (MQ=255)                                                                                            ggAAAGCGTAGCCACACGCAACAACTGAAAGCAGTTTGGCAGAAACAAAAAATCCCCGGACTCGGGGATTTATGTACAAGAGGCAGCCCTTAGGATGAGGGTATAAACGTACAGGAAAGGTTAAAAATCCGCTGGCGCTTTAAACGTCa                                                  >  1:493383/1‑149 (MQ=255)                                                                                              aaaGCGTAGCCACACGCAACAACTGAAAGCAGTTTGGCAGAAACAAAAAATCCCCGGACTCGGGGATTTATGTACAAGAGGCAGCCCTTAGGATGAGGGTATAAACGTAc                                                                                       >  2:163332/1‑110 (MQ=255)                                                                                              aaaGCGTAGCCACACGCAACAACTGAAAGCAGTTTGGCAGAAACAAAAAATCCCCGGACTCGGGGATTTATGTACAAGAGGCAGCCCTTAGGATGAGGGTATAAACGTAc                                                                                       <  1:163332/110‑1 (MQ=255)                                                                                              aaaGCGTAGCCACACGCAACAACTGAAAGCAGTTTGGCAGAAACAAAAAATCCCCGGACTCGGGGATTTATGTACAAGAGGCAGCCCTTAGGATGAGGGTATAAACGTACAGGAAAGGTTAAAAATCCGCTGGCGCTTTAAACGTCATa                                                >  2:11662/1‑149 (MQ=255)                                                                                               aaGCGTAGCCACACGCAACAACTGAAAGCAGTTTGGCAGAAACAAAAAATCCCCGGACTCGGGGATTTATGTACAAGAGGCAGCCCTTAGGATGAGGGTATAAACGTACAGGAAAGGTTAAAAATCCGCTGGCGCTTTAAACGTCATAc                                               >  2:491558/1‑149 (MQ=255)                                                                                                       ccACACGCAACAACTGAAAGCAGTTTGGCAGAAACAAAAAATCCCCGGACTCGGGGATTTATGTACAAGAGGCAGCCCTTAGGATGAGGGTATAAACGTACAGGAAAGGTTAAAAATCCGCTGGCGCTTTAAACGTCATACTATTGCCa                                       <  2:493383/149‑1 (MQ=255)                                                                                                         acacGCAACAACTGAAAGCAGTTTGGCAGAAACAAAAAATCCCCg                                                                                                                                             <  2:44834/45‑1 (MQ=255)                                                                                                         acacGCAACAACTGAAAGCAGTTTGGCAGAAACAAAAAATCCCCg                                                                                                                                             >  1:44834/1‑45 (MQ=255)                                                                                                                   acTGAAAGCAGTTTGGCAGAAACAAAAAACCCCCGGACTCGGGGATTTATGTACAAGAGGCAGCCCTTAGGATGAGGGTATAAACGTACAGTAAAGGTTAAAAATCCGCTGGCGCTTTAAACGTCATACTATTGCCATACGCCGGATgg                           <  2:189778/149‑1 (MQ=255)                                                                                                                    cTGAATGTAGTTTGGCAGAAACAAAAAAGCCCCGGACTCGTGGATTTATGTACAAGAGGCAGCCCTTAGGATGAGGGTATAAACGTACAGGAAAGGTTAAAAACCCGCTGGCGCTTTAAACGTCATACTATTGCCATACGCCGGATggg                          <  1:55664/149‑1 (MQ=255)                                                                                                                    cTGAAAGCAGTTTGGCAGAAACAAAAAATCCCCGGACTCGGGGATTTATGTACAAGAGGCAGCCCTTAGGATGAGGGTATAAACGAACAGGAAAGGCTAAAAATCCGCTGGCGCTATAAACGTCATACTACTGCCATACGCCGCATggg                          >  2:210790/1‑149 (MQ=255)                                                                                                                     tGAAAGCAGTTTGGCAGAAACAAAAAATCCCCGGACTCGGGGATTTATGTACAAGAGGCAGCCCTTAGGATGAGGGTATAAACGTACAGGAAAGGTTAAAAATCCGCTGGCGCTTTAAACGTCATACTATTGCCATACGCCAGATGGGt                         >  2:352140/1‑149 (MQ=255)                                                                                                                       aaaGCAGTTTGGCAGAAACAAAAAATCCCCGGACTCGGGGATTTATGTACAAGAGGCAGCCCTTAGGATGAGGGTATAAACGTACAGGAAAGGTTAAAAATCCGCTGGCGCTTTAAACGTCATACTATTGCCATACGCCGGATGGGTaa                       >  2:357334/1‑149 (MQ=255)                                                                                                                           cAGTTTGGCAGAAACAAAAAATCCCCGGACTCGGGGATTTATGTACAAGAGGCAGCCCTTAGGATGAGGGTATAAACGGACAGGAAAGGTTAAAAATCCGCTGGCGCTTTAAACGTCATACTATTGCCATACGCCGGATGGGTAATCGt                   <  2:381434/149‑1 (MQ=255)                                                                                                                                   cAGAAACAAAAAATCCCCGGACTCGGGGATTTATGTACAAGAGGCAGCCCTTAGGATGAGGGTATAAACGTACAGGAAAGGTTAAAAATCCGCTGGCGCTTTAAACGTCATACTATTGCCATACGCCGGATGGGTAATCGTCAACAtct           <  1:357334/149‑1 (MQ=255)                                                                                                                                    aGAAACAAAAAATCCCCGGCCTCGGGGATTTATGTACAAGAGGCAGCCATTAGGATGAGGGTATAAACGTACAGGAAAGGTTAAAAATCCACTGGCGATTTAAACGTCATACTATTGCCATACGCCAGATGGGTAGTCGTCAACAtctc          >  2:142775/1‑149 (MQ=255)                                                                                                                                    aGAAACAAAAAATCCCCGGACTCGGGGATTTATGTACAAGAGGCAGCCCTTAGGATGAGGGTATAAACGTACAGGAAAGGTTAAAAATCCGCTGGCGCTTTAAACGTCATACTATTGCCATACGCCGGATGGGTAATCGt                   <  2:366478/140‑1 (MQ=255)                                                                                                                                    aGAAACAAAAAATCCCCGGACTCGGGGATTTATGTACAAGAGGCAGCCCTTAGGATGAGGGTATAAACGTACAGGAAAGGTTAAAAATCCGCTGGCGCTTTAAACGTCATACTATTGCCATACGCCGGATGGGTAATCGt                   >  1:366478/1‑140 (MQ=255)                                                                                                                                            aaaaTCCCCGGACTCGGGGATTTATGTACAAGAGGCAGCCCTTAGGATGAGGGTATAAACGTACAGGAAAGGTTAAAAATCCGCTGGCGCTTTAAACGTCATACTATTGCCATACGCCGGATGGGTAATCGTCAACATCTCTGCATGTa  <  1:146678/149‑1 (MQ=255)                                                                                                                                             |                                                                                                                                                    CAGACCCGTTAAAATGAAATATAAGAGACGGTCAACGGGTGAAGAAAAAGTTC‑AAAAATTCGCTGTGGAGCAGGAAGGGAATTACCGAATGGAAAGCGTAGCCACACGCAACAACTGAAAGCAGTTTGGCAGAAACAAAAAATCCCCGGACTCGGGGATTTATGTACAAGAGGCAGCCCTTAGGATGAGGGTATAAACGTACAGGAAAGGTTAAAAATCCGCTGGCGCTTTAAACGTCATACTATTGCCATACGCCGGATGGGTAATCGTCAACATCTCTGCATGTA  >  NC_000913_3_pae_pgi/59477‑59763

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.