New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913_3_pae_pgi	59616 =	39 (1.330)	5 (0.180)	5/264	3.1	11.8%	intergenic (+337/+71)	yabP/rluA	pseudogene, pentapeptide repeats‑containing/dual specificity 23S rRNA pseudouridine(746), tRNA pseudouridine(32) synthase, SAM‑dependent
	?	NC_000913_3_pae_pgi	59638 =	38 (1.380)					intergenic (+359/+49)	yabP/rluA	pseudogene, pentapeptide repeats‑containing/dual specificity 23S rRNA pseudouridine(746), tRNA pseudouridine(32) synthase, SAM‑dependent
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

AAATATAAGAGACGGTCAACGGGTGAAGAAAAAGTTC‑AAAAATTCGCTGTGGAGCAGGAAGGGAATTACCGAATGGAAAGCGTAGCCACACGCAACAACTGAAAGCAGTTTGGCAGAAACAAAAAATCCCCGGACTCGGGGATTTATGTACAAGAGGCAGCCCTTAGGATGAGGGTATAAACGTACAGGAAAGGTTAAAAATCCGCTGGCGCTTTAAACGTCATACTATTGCCATACGCCGGATGGGTAATCGTCAACATCTCTGCATGTAGCAACAAACGTGGT  >  NC_000913_3_pae_pgi/59493‑59777                                                                                                                                                   |                                                                                                                                            caaTAAAAGAGTCGGTCAACGGGTGAACAAAAAGTTC‑AAAACTTCGCCGGTGAGCAGGAAGGGAATTACCGAATGGAAAGCGTAGCCACACGCAACAACTGAAAGCAGTTTGGCAGAAACAAAAAATCCCCGGACTCGGGGATTTATGt                                                                                                                                          <  1:40726/148‑1 (MQ=255)                         gaagaaAAAGTTC‑AAAAATTCACTGTGGAGCAGGAAAGGAATTACCGAATGGAAAGCGTAGCAAAACGAAACAACTTTAAGCATTTGTGCAGAAACAAGAATTCCCCGCACTCGGGGATTTATGTACAAGAAGCAGCCCTTAGGACGAg                                                                                                                  >  2:57438/1‑149 (MQ=255)                          aagaaAAAGTTC‑AAAAATTCGCTGTGGAGCAGGAAGGGAATTACCGAATGGAAAGCGTAGCCACACGCAACAACTGAAAGCAGTTTGGCAGAAACAAAAAATCCCCGGACTCGGGGATTTATGTACAAGAGGCAGCCCTTAGGATGAgg                                                                                                                 <  2:161590/149‑1 (MQ=255)                             aaaaaGTTC‑AAAAATTCGCTGTGGAGCAGGAAGGGAATTACCGAATGGAAAGCGTAGCCACACGCAACAACTGAAAGCAGTTTGGCAGAAACAAAAAATCCCCGGACTCGGGGATTTATGTACAAGAGGCAGCCCTTAGGATGAGGGta                                                                                                              >  1:59939/1‑149 (MQ=255)                              aaaaATTCAAAAAATACGCTGCGGAGGAGGAAGGGAATTACCGAATGGAAAGCGTAGCCACACGCAACCACCGAAAGCAGTTAAAAAAAAAAAAAAAATCCCCGGACTCGGGGATTTATGTACAAGAGGCAGCCCTTAGGATGAGGGta                                                                                                              <  2:406842/149‑1 (MQ=255)                                  tttC‑AAAAATTCGCTGTGGAGCAGGAAGGGAATTACCGAATGGAAAGCGGAGCCACACGCAACAACTGAAAGCAGTTTGGCAGAAACAAAAAATCCCCGGACTCGGGGATTTATGTACAAGAGGCAGCCCTTAGGATGAGGGTATAAAc                                                                                                         <  2:419323/148‑1 (MQ=255)                                  gTTC‑AAAAATGCGCTGTGGAGCAGGAAGGGAATTACCGAATGGAAAGCGTAGCCACACGCAACAACTGAAAGCAGTTTGGCAGAAACAAAAAATCCCCGGACTCGGGGATTTATGTACAAGAGGCAGCCCTTAGGATGAGGGTATAAAc                                                                                                         <  1:137624/149‑1 (MQ=255)                                       aaaaaTTCGCTGTGGAGCAGGAAGGGAATTACCGAATGGAAAGCGTAGCCACACGCAACAACTGAAAGCAGTTTGGCAGAAACAAAAAATCCCCGGACTCGGGGATTTATGTACAAGAGGCAGCCCTCAGGCTAAGGGTATAACCGtca                                                                                                     >  1:199431/1‑147 (MQ=255)                                            ttCGCTGTGGAGCAGGAAGGGAATTACCGAATGGAAAGCGTAGCCACACGCAACAACTGAAAGCAGTTTGGCAGAAACAAAAAATCCCCGGACTCGGGGATTTATGTACAAGAGGCAGCCCTTAGGCTGAGGCTGTAAACGTACAGGaa                                                                                                >  2:378550/1‑149 (MQ=255)                                            ttCGCTGTGGAGCAGGAAGGGAATTACCGAATGGAAAGCGTAGCCACACGCAACAACTGAAAGCAGTTTGGCAGAAACAAAAAATCCCCGGACTCGGGGATTTATGTACAAGAGGCAGCCCTTAGGATGAGGGTATAAACGTACAGGaa                                                                                                <  1:159175/149‑1 (MQ=255)                                             tCGCTGTGGAGCAGGAAGGGAATTACCGAATGGAAAGCGTAGCCACACGCAACAACTGAAAGCAGTTTGGCAGAAACAAAAAATCCCCGGACTCGGGGATTTATGTACAAGAGGCAGCCCTTAGGATGAGGGTATAAACGTACAGGaaa                                                                                               <  1:117170/149‑1 (MQ=255)                                                cTGTGGATCAGGAAGGGAATTACCGAATGGAAACCGTAGCCACACGCAACAACTGAAAGCAGTTTGTCACAAACTAAAAATCCCCGGACTCGGGGATTTATGTACAAGAGGCAGCCCTTAGGATGAGGGTATAAACGTACAGGAAAGGt                                                                                            <  1:225949/149‑1 (MQ=255)                                                cTGTGGAGCAGGAAGGGAATTACCGAATGGAAAGCGTAGCCACACGCAACAACTGAAAGCAGTTTGGCAGAAACAAAAAATCCCCGGACTCGGGGATTTATGTACAAGAGGCAGCCCTTAGGATGAGGGTATAAACGTACAGGAAAGGt                                                                                            >  2:146678/1‑149 (MQ=255)                                                  gtgGAGCAGGAAGGGAATTACCGAATGGAAAGCGTAGCCACACGCAACAACTGAAAGCAGTTTGGCAGAAACAAAAAATCCCCGGACTCGGGGCTTTATGt                                                                                                                                          <  2:295128/101‑1 (MQ=255)                                                  gtgGAGCAGGAAGGGAATTACCGAATGGAAAGCGTAGCCACACGCAACAACTGAAAGCAGTTTGGCAGAAACAAAAAATCCCCGGACTCGGGGATTTATGt                                                                                                                                          >  1:295128/1‑101 (MQ=255)                                                           gAAGGGAATTACCGAATGGGAAGCGTAGCCACACGCAACAACTGAAAGCAGTTTGGCAGAAACAAAAAATCCCCGGACTCGGGGATTTATGTACAAGAGGCAGCCCTTAGGATGAGGGTATAAACGTACAGGAAAGGTTCAAAATCCGc                                                                                 >  2:437483/1‑149 (MQ=255)                                                               ggAATTACCGAATGGAAAGCGTCGGCCCGCGGAACAACTGAAAGCAGTTTGGCAGAAACAAAAAATCCCCGGACTCGGGGGTTTATGTACAAGAGGCAGCCCTGAGGATGAGGGTATAAACGTACAGGCAAGTGTACAAATCCGCTGgc                                                                             >  2:4545/1‑149 (MQ=255)                                                                            ggAAAGCGTAGCCACACGCAACAACTGAAAGCAGTTTGGCAGAAACAAAAAATCCCCGGACTCGGGGATTTATGTACAAGAGGCAGCCCTTAGGATGAGGGTATAAACGTACAGGAAAGGTTAAAAATCCGCTGGCGCTTTAAACGTCa                                                                >  1:493383/1‑149 (MQ=255)                                                                              aaaGCGTAGCCACACGCAACAACTGAAAGCAGTTTGGCAGAAACAAAAAATCCCCGGACTCGGGGATTTATGTACAAGAGGCAGCCCTTAGGATGAGGGTATAAACGTAc                                                                                                     <  1:163332/110‑1 (MQ=255)                                                                              aaaGCGTAGCCACACGCAACAACTGAAAGCAGTTTGGCAGAAACAAAAAATCCCCGGACTCGGGGATTTATGTACAAGAGGCAGCCCTTAGGATGAGGGTATAAACGTAc                                                                                                     >  2:163332/1‑110 (MQ=255)                                                                              aaaGCGTAGCCACACGCAACAACTGAAAGCAGTTTGGCAGAAACAAAAAATCCCCGGACTCGGGGATTTATGTACAAGAGGCAGCCCTTAGGATGAGGGTATAAACGTACAGGAAAGGTTAAAAATCCGCTGGCGCTTTAAACGTCATa                                                              >  2:11662/1‑149 (MQ=255)                                                                               aaGCGTAGCCACACGCAACAACTGAAAGCAGTTTGGCAGAAACAAAAAATCCCCGGACTCGGGGATTTATGTACAAGAGGCAGCCCTTAGGATGAGGGTATAAACGTACAGGAAAGGTTAAAAATCCGCTGGCGCTTTAAACGTCATAc                                                             >  2:491558/1‑149 (MQ=255)                                                                                       ccACACGCAACAACTGAAAGCAGTTTGGCAGAAACAAAAAATCCCCGGACTCGGGGATTTATGTACAAGAGGCAGCCCTTAGGATGAGGGTATAAACGTACAGGAAAGGTTAAAAATCCGCTGGCGCTTTAAACGTCATACTATTGCCa                                                     <  2:493383/149‑1 (MQ=255)                                                                                                   acTGAAAGCAGTTTGGCAGAAACAAAAAACCCCCGGACTCGGGGATTTATGTACAAGAGGCAGCCCTTAGGATGAGGGTATAAACGTACAGTAAAGGTTAAAAATCCGCTGGCGCTTTAAACGTCATACTATTGCCATACGCCGGATgg                                         <  2:189778/149‑1 (MQ=255)                                                                                                    cTGAATGTAGTTTGGCAGAAACAAAAAAGCCCCGGACTCGTGGATTTATGTACAAGAGGCAGCCCTTAGGATGAGGGTATAAACGTACAGGAAAGGTTAAAAACCCGCTGGCGCTTTAAACGTCATACTATTGCCATACGCCGGATggg                                        <  1:55664/149‑1 (MQ=255)                                                                                                    cTGAAAGCAGTTTGGCAGAAACAAAAAATCCCCGGACTCGGGGATTTATGTACAAGAGGCAGCCCTTAGGATGAGGGTATAAACGAACAGGAAAGGCTAAAAATCCGCTGGCGCTATAAACGTCATACTACTGCCATACGCCGCATggg                                        >  2:210790/1‑149 (MQ=255)                                                                                                     tGAAAGCAGTTTGGCAGAAACAAAAAATCCCCGGACTCGGGGATTTATGTACAAGAGGCAGCCCTTAGGATGAGGGTATAAACGTACAGGAAAGGTTAAAAATCCGCTGGCGCTTTAAACGTCATACTATTGCCATACGCCAGATGGGt                                       >  2:352140/1‑149 (MQ=255)                                                                                                       aaaGCAGTTTGGCAGAAACAAAAAATCCCCGGACTCGGGGATTTATGTACAAGAGGCAGCCCTTAGGATGAGGGTATAAACGTACAGGAAAGGTTAAAAATCCGCTGGCGCTTTAAACGTCATACTATTGCCATACGCCGGATGGGTaa                                     >  2:357334/1‑149 (MQ=255)                                                                                                           cAGTTTGGCAGAAACAAAAAATCCCCGGACTCGGGGATTTATGTACAAGAGGCAGCCCTTAGGATGAGGGTATAAACGGACAGGAAAGGTTAAAAATCCGCTGGCGCTTTAAACGTCATACTATTGCCATACGCCGGATGGGTAATCGt                                 <  2:381434/149‑1 (MQ=255)                                                                                                                   cAGAAACAAAAAATCCCCGGACTCGGGGATTTATGTACAAGAGGCAGCCCTTAGGATGAGGGTATAAACGTACAGGAAAGGTTAAAAATCCGCTGGCGCTTTAAACGTCATACTATTGCCATACGCCGGATGGGTAATCGTCAACAtct                         <  1:357334/149‑1 (MQ=255)                                                                                                                    aGAAACAAAAAATCCCCGGCCTCGGGGATTTATGTACAAGAGGCAGCCATTAGGATGAGGGTATAAACGTACAGGAAAGGTTAAAAATCCACTGGCGATTTAAACGTCATACTATTGCCATACGCCAGATGGGTAGTCGTCAACAtctc                        >  2:142775/1‑149 (MQ=255)                                                                                                                    aGAAACAAAAAATCCCCGGACTCGGGGATTTATGTACAAGAGGCAGCCCTTAGGATGAGGGTATAAACGTACAGGAAAGGTTAAAAATCCGCTGGCGCTTTAAACGTCATACTATTGCCATACGCCGGATGGGTAATCGt                                 >  1:366478/1‑140 (MQ=255)                                                                                                                    aGAAACAAAAAATCCCCGGACTCGGGGATTTATGTACAAGAGGCAGCCCTTAGGATGAGGGTATAAACGTACAGGAAAGGTTAAAAATCCGCTGGCGCTTTAAACGTCATACTATTGCCATACGCCGGATGGGTAATCGt                                 <  2:366478/140‑1 (MQ=255)                                                                                                                            aaaaTCCCCGGACTCGGGGATTTATGTACAAGAGGCAGCCCTTAGGATGAGGGTATAAACGTACAGGAAAGGTTAAAAATCCGCTGGCGCTTTAAACGTCATACTATTGCCATACGCCGGATGGGTAATCGTCAACATCTCTGCATGTa                <  1:146678/149‑1 (MQ=255)                                                                                                                                  cccGGACTCGGGGATTTATGTACAAGAGGCAGCCCTTAGGATGAGGGTATAAACGTACAGGAAAGGTTAAAAATCCGCTGGCGCTTTAAACGTCATACTATTGCCATACGCCGGATGGGTAATCGTCAACAtct                         >  2:421023/1‑134 (MQ=255)                                                                                                                                  cccGGACTCGGGGATTTATGTACAAGAGGCAGCCCTTAGGATGAGGGTATAAACGTACAGGAAAGGTTAAAAATCCGCTGGCGCTTTAAACGTCATACTATTGCCATACGCCGGATGGGTAATCGTCAACAtct                         <  1:421023/134‑1 (MQ=255)                                                                                                                                  cccGGACTCGGGGATTTATGTACAAGAGGCAGCCCTTAGGATGAGGGTATAAACGTACAGGAAAGGTTAAAAATCCGCTGGCGCTTTAAACGTCATACTATTGCCATACGCCGGATGGGTAATCGTCAACATCTCTGCATGTAGcaaca          >  1:144879/1‑149 (MQ=255)                                                                                                                                       gtccGGGGATTTATGTACAAGAGGCAGCCCTTAGGATGAGGGTATAAACGTACAGGAAAGGTTAAAAATCCGCTGGCGCTTTAAACGTCATACTATTGCCATACGCCGGAt                                           >  2:256826/4‑111 (MQ=255)                                                                                                                                       gtccGGGGATTTATGTACAAGAGGCAGCCCTTAGGATGAGGGTATAAACGTACAGGAAAGGTTAAAAATCCGCTGGCGCTTTAAACGTCATACTATTGCCATACGCCGGAt                                           <  1:256826/108‑1 (MQ=255)                                                                                                                                       aCTCTGGGATTTATGTACAAGAGGCAGCCCTTAGGATGAGGGTATAAACGTACAGGAAAGGTTAAAAATCCGCTGGCGCTTTAAACGTCATACTATTGCCATACGCCGGATGGGTAATCGTCAACATCTCTGCATGTAGCAACAAACgt     <  1:415070/149‑1 (MQ=255)                                                                                                                                          cGGGGATTTATGTACAAGAGGCAGCCCTTAGGATGAGGGTATAAACGTACAGGAAAGGTTAAAAATCCGCTGGCGCTTTAAACGTCATACTATTGCCGTACTCCGGATGGGTAATCGTCAACATCTCTGCATGTAGCAACAAACgtggt  >  1:146066/1‑149 (MQ=255)                                                                                                                                          cGGGGATTTATGTACAAGAGGCAGCCCTTAGGATGAGGGTATAAACGTACAGGAAAGGTTAAAAATCCGCTGGCGCTTTAAACGTCATACTATTGCCATACGCCGGATGGGTAATCGTCAACATCTCTGCATGTAGCAACAAACgtggt  <  2:59939/149‑1 (MQ=255)                                                                                                                                                   |                                                                                                                                            AAATATAAGAGACGGTCAACGGGTGAAGAAAAAGTTC‑AAAAATTCGCTGTGGAGCAGGAAGGGAATTACCGAATGGAAAGCGTAGCCACACGCAACAACTGAAAGCAGTTTGGCAGAAACAAAAAATCCCCGGACTCGGGGATTTATGTACAAGAGGCAGCCCTTAGGATGAGGGTATAAACGTACAGGAAAGGTTAAAAATCCGCTGGCGCTTTAAACGTCATACTATTGCCATACGCCGGATGGGTAATCGTCAACATCTCTGCATGTAGCAACAAACGTGGT  >  NC_000913_3_pae_pgi/59493‑59777

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.