New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913_3_pae_pgi	= 1863799	31 (1.150)	4 (0.160)	4/258	3.1	12.1%	intergenic (+33/‑51)	gapA/yeaD	glyceraldehyde‑3‑phosphate dehydrogenase A/D‑hexose‑6‑phosphate epimerase‑like protein
	?	NC_000913_3_pae_pgi	= 1863803	30 (1.220)					intergenic (+37/‑47)	gapA/yeaD	glyceraldehyde‑3‑phosphate dehydrogenase A/D‑hexose‑6‑phosphate epimerase‑like protein
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

GTGTTCGATGCTAAAGCTGGTATCGCTCTGAACGACAACTTCGTGAAACTGGTATCCTGGTACGACAACGAAACCGGTTACTCCAACAAAGTTCTGGACCTGATCGCTCACATCTCCAAATAAGTTGAGATGACACTGTGATCTAAAAAGAGCGAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913_3_pae_pgi/1863644‑1863799 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aaaaagagcgacCGAAGTCGCTCTTTTTAGATCACAGTGTCATCTCAACTTATTTGGAGATGTGAGCGATCAGGTCCAGAACTTTGTTGGAGTAACCGGTTTCGTTGTCGTACCAGGATACCAGTTTCACGAAGTTGTCGTTCAGAGCG  <  NC_000913_3_pae_pgi/1863803‑1863667                                                                                                                                                                                                                                                                                                       GTGTTCGATGCTAAAGCTGGTATCGCTCTGAACGACAACTTCGTGAAACTGGTATCCTGGTACGACAACGAAACCGGTTACTCCAACAAAGTTCTGGACCTGATCGCTCACATCTCCAAATAAGTTGAGATGACACTGTGATCTAAAAA                                                                                                                                                  >  1:294643/1‑149       GATGCTAAAGCTGGTATCGCTCTGAACGACAACTTCGTGAAACTGGTATCCTGGTACGACAACGAAACCGGTTACTCCAACAAAGTTCTGGACCTGATCGCTCACATCTCCAAATAAGTTGAGATGACACTGTGATCTAAAAAGAGCGA                                                                                                                                            >  1:190460/1‑149       GATGCTAAAGCTGGTATCGCTCTGAACAACAACTTCGTGAAACTGGTATCCTGGTACGACAACGAAACCGGATACTCCAACAAAGTTCTGGACCTGATCGCTCACATCTCCAAATAAGTTGAGCTTACACTGTGATCTAAAACGAGCGg                                                                                                                                            >  2:258079/1‑148                      ATCGCTCTGAACGACAACTTCGTGAAACTGGTATCCTGGTACGACAACGAAACCGGTTACTCCAACAAAGTTCTGGACCTGATCGCTCACATCTCCAAATAAGTTGAGATGACACTGTGATCTAAAAAGAGCGACCGAAGTCGCTCTTT                                                                                                                             <  2:190460/149‑1                                                                                                      GATCGCTCACATCTCCAAATAAGTTGAGATGACACTGTGATCTAAAAAGA                                                                                                                                                <  1:204768/50‑1                                                                                                      GATCGCTCACATCTCCAAATAAGTTGAGATGACACTGTGATCTAAAAAGA                                                                                                                                                >  2:204768/1‑50                                                                                                                            GTTGAGATGACACTGTGATCTAAAAAGAGCGACCGAAGTCGCTCT                                                                                                                               >  1:237644/1‑45                                                                                                                            GTTGAGATGACACTGTGATCTAAAAAGAGCGACCGAAGTCGCTCT                                                                                                                               <  2:237644/45‑1                                                                                                                                             ATCTAAAAAGAGCGACCGAAGTCGCTCTTTTTAGATCACAGTGTCATCTCAACTTATTTGGAGATGTGAGCGATCAGGTCCAGAACTTTGTTGGAGTAACCGGTTTCGTTGTCGTACCAGGATACCAGTTTCACGAAGTTGTCGTTCAG      >  2:381725/1‑149                                                                                                                                                 AAAAAGAGCGACCGAAGTCGCTCTTTTTAGATCACAGTGTCATCTCAACTTATTTGGAGATGTGAGCGATCAGGTCCAGAACTTTGTTGGAGTAACCGGTTTCGTTGTCGTACCAGGATACCAGTTTCACGAAGTTGTCGTTCAGAGCG  >  1:187815/1‑149                                                                                                                                                                                                                                                                                                       GTGTTCGATGCTAAAGCTGGTATCGCTCTGAACGACAACTTCGTGAAACTGGTATCCTGGTACGACAACGAAACCGGTTACTCCAACAAAGTTCTGGACCTGATCGCTCACATCTCCAAATAAGTTGAGATGACACTGTGATCTAAAAAGAGCGAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913_3_pae_pgi/1863644‑1863799 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aaaaagagcgacCGAAGTCGCTCTTTTTAGATCACAGTGTCATCTCAACTTATTTGGAGATGTGAGCGATCAGGTCCAGAACTTTGTTGGAGTAACCGGTTTCGTTGTCGTACCAGGATACCAGTTTCACGAAGTTGTCGTTCAGAGCG  <  NC_000913_3_pae_pgi/1863803‑1863667

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.