New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913_3_pae_pgi	= 1863799	31 (1.150)	4 (0.160)	4/258	3.1	12.1%	intergenic (+33/‑51)	gapA/yeaD	glyceraldehyde‑3‑phosphate dehydrogenase A/D‑hexose‑6‑phosphate epimerase‑like protein
	?	NC_000913_3_pae_pgi	= 1863803	30 (1.220)					intergenic (+37/‑47)	gapA/yeaD	glyceraldehyde‑3‑phosphate dehydrogenase A/D‑hexose‑6‑phosphate epimerase‑like protein
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

CGCTCTGAACGACAACTTCGTGAAACTGGTATCCTGGTACGACAACGAAACCGGTTACTCCAACAAAGTTCTGGACCTGATCGCTCACATCTCCAAATAAGTTGAGATGACACTGTGATCTAAAAAGAGCGACTTCGGTCGCTCTTTTTTTTACCTGATAAAATGAAGTTAAAGGACTGCGTCATGATTAAGAAAATTTTTGCCCTTCCGGTCATCGAACAAATCTCCCCTGTCCTCTCCCGTCGTAAACTGGATGAACTGGACCTCATTGTGGTCGA  >  NC_000913_3_pae_pgi/1863667‑1863944                                                                                                                                     |                                                                                                                                                  cGCTCTGAACGACAACTTCGTGAAACTGGTATCCTGGTACGACAACGAAACCGGTTACTCCAACAAAGTTCTGGACCTGATCGCTCACATCTCCAAATAAGTTGAGATGACACTGTGATCTAAAAAGAGCGACTTCGGTCGCTCttttt                                                                                                                                   <  1:187815/149‑1 (MQ=255)     ctGAACGACAACTTCGTGAAACTGGTATCCTGGTACGACAACGAAACCGGTTACTCCAACAAAGTTCTGGACCTGATCGCTCACATCTCCAAATAAGTTGAGATGACACTGTGATCTAAAAAGAGCGACTTCGGTCGCTCtttttagat                                                                                                                               <  2:381725/149‑5 (MQ=255)           gACAACTTCGTGAAACTGGTATCCTGGTACGACAACGAAACCGGTTACTCCAACAAAGTTCTGGACCTGATCGCTCACATCTCCAAATAAGTTGAGATGCAAATGTGTTCTAAAAAGGGCGACTTCGGTCGCTCTTTTTTTTACCTGAt                                                                                                                         >  1:131924/1‑149 (MQ=255)              aaCTTCGTGAAACTGGTATCCTGGTACGACAACGAAACCGGTTACTCCAACAAAGTTCTGGACCTGATCGCTCACATCTCCAAATAAGTTGAGATGACACTGTGATCTAAAAAGAGCGACTTCGGTCGCTCTTTTTTTTACCTGATaaa                                                                                                                      >  1:147307/1‑149 (MQ=255)               aCTTCGTGAAACTGGTATCCTGGTACGACAACGAAACCGGTTACTCCAACAAAGTTCTGGACCTGATCGCTCACATCTCCAAATAAGTTGAGATGACACTGTGATCTAAAAAGAGCGACTTCGGTCGCTCTTTTTTTTACCTGATaaaa                                                                                                                     <  1:205616/149‑1 (MQ=255)                 ttCGTGAAACTGGTATCCTGGTACGACAACGAAACCGGTTACTCCAACAAAGTTCTGGACCTGATCGCTGACATCTCCAAGTAAGTTGACATGACACTGTGATCTAAAAAGACCAACTTCGGTCGTTCTTTTTTATACCTGATAAAATg                                                                                                                   >  1:10725/1‑149 (MQ=255)                 ttCGTGAAACTGGTATCCTGGTACGACAACGAAACCGGTTACTCCAACAAAGTTCTGGACCTGATCGCTCACATCTCCAAATAAGTTGAGATGACACTGTGATCTAAAAAGAGCGACTTCGGTCGCTCTTTTTTTTACCTGATAAAATg                                                                                                                   >  1:10473/1‑149 (MQ=255)                    gTGAAACTGGTATCCTGGTACGACAACGAAACCGGTTACTCCAACAAAGTTCTGGACCTGATCGCTCACATCTCCAAATAAGTTGAGATGACACTGTGATCTAAAAAGAGCGACTTCGGTCGCTCTTTTTTTTACCTGATAAAATGAAg                                                                                                                >  1:307353/1‑149 (MQ=255)                    gTGAAACTGGTATCCTGGTACGACAACGAAACCGGTTACTCCAACAAAGTTCTGGACCTGATCGCTCACATCTCCAAATAAGTTGAGATGACACTGTGATCTAAAAAGAGCGACTTCGGTCGCTCTTTTTTTTACCTGATAAAATGAAg                                                                                                                <  1:474991/149‑1 (MQ=255)                     tGAAACTGGTATCCTGGTACGACAACGAAACCGGTTACTCCAACAAAGTTCTGGACCTGATCGCTCACATCTCCAAATAAGTTGAGATGACACTGTGATCTAAAAAGAGCGACTTCGGTCGCTCTTTTTTTTACCTGATAAAATGAAGt                                                                                                               <  1:180148/149‑1 (MQ=255)                            ggTATCCTGGTACGACAACGAAACCGGTTACTCCAACAAAGTTCTGGACCTGATCGCTCACATCTCCAAATAAGTTGAGATGACACTGTGATCTAAAAAGAGCGACTTCGGTCGCTCTTTTTTTTACCTGATAAAATGAAGTTAAAGGa                                                                                                        >  1:289514/1‑149 (MQ=255)                              tATCCTGGTACGACAACGAAACCGGTTACTCCAACAAAGTTCTGGACCTGATCGCTCACATCTCCAAATAAGTTGAGATGACCCTGTGATCTAAAAAGAGCGACTTCGGTCGCTCTTTTTTTTACCTGATAAAATGAAGTTAAAGGACt                                                                                                      >  1:468047/1‑149 (MQ=255)                                  cTGGTACCACAACGAAACCGGTTACTCCAACAAAGTTCTGGACCTGATCGCTCACATCTCCAAATAAGTTGAGATGACACTGTGATCTAAAAAGAGCGACTTCGGTCGCTCTTTTTTTTACCTGATAAAATGAAGTTAAAGGACTGCGt                                                                                                  <  1:118421/149‑1 (MQ=255)                                         gACAACGAAACCGGTTACTCCAACAAAGTTCTGGACCTGATCGCTCACAGCTCCAAATAAGTTGAGATGACACTGTGATCTAAAAAGAGCGACGTCGGTCGTTCCTTTTTTTACCTGATAAAATGAAGTTAAAGGACTGCGTCATGAtt                                                                                           <  1:261293/149‑1 (MQ=255)                                          aCAACGAAACCGGTTACTCCAACAAAGTTCTGGACCTGATCGCTCACATCTCCAAATAAGTTGAGATGACACTGTGATCTAAAAAGAGCGACTTCGGTCGCTCTTTTTTTTACCTGATAAAATGAAGTTAAAGGACTGCGTCATGATTa                                                                                          <  2:147307/149‑1 (MQ=255)                                           cAACGAAACCGGTTACTCCAACAAAGTTCTGGACCTGATCGCTCACATCTCCAAATAAGTTGAGATGACACTGTGATCTAAAAAGAGCGACTTCGGTCGCTCTTTTTTTTACCTGATAAAATGAAGTTAAAGGACTGCGTCATGATTaa                                                                                         >  1:474146/1‑149 (MQ=255)                                           cAACGAAACCGGTTACTCCAACAAAGTTCTGGACCTGATCGCTCACATCTCCAAATAAGTTGAGATGACACTGTGATCTAAAAAGAGCGACTTCGGTCGCTCTTTTTTTTACCTGATAAAATGAAGTTAAAGGACTGCGTCATGATTaa                                                                                         <  2:468047/149‑1 (MQ=255)                                                     ggTTACTCCAACAAAGTTCTGGACCTGATCGCTCACATCTCCAAATAAGTTGAGATGACACTGTGATCTAAAAAGAGCGACTTCGGTCGCTCTTTTTTTTACCTGATAAAATGAAGTTAAAGGACTGCGTCATGATTAAGAAAAttttt                                                                               <  2:100775/149‑1 (MQ=255)                                                                                aTCGCTCACATCTCCAAATAAGTTGAGATGACACTGTGATCTAAAAAGAGCGACTTCGGTCGCTCTTTTTTTTACCTGATAAAATGAAGTTAAAGGACTGCGTCATGATTAAGAAAATTTTTGCCCTTCCGGTCATCGAACAAGTCTcc                                                    >  1:206606/1‑149 (MQ=255)                                                                                         aTCTCCCAACAAGTTGAGATGACACTGTGATCTAAAAAGAGCGACTTCGGTCGCTCTTTTTTTTACCTGATAAAATGAAGTTAAAGGACTGCGTCATGATTAAGAAAATTTTTGCCCTTCCGGTCATCGAACAACTCTCCCCTATCctc                                           >  2:58602/1‑149 (MQ=255)                                                                                         aTCTCCAAATAAGTTGAGATGACACTGTGATCTAAAAAGAGCGACTTCGGTCGCTCTTTTTTTTACCTGATAAAATGAAGTTAAAGGACTGCGTCATGATTAAGAAAATTTTTGCCCTTCCGGTCATCGAACAAATCTCCCCTGTCctc                                           <  1:57721/149‑1 (MQ=255)                                                                                             ccAAATAAGTTGATATGACACTGTGATCTAAAAAGAGCTACTTCGGTCGCTCTTTTTTTTACCTGATAAAATGAAGTTAAAGGACTAAGTCATGATGAAGAAAATTTTTGCCCTTCCTGTCATCGAACAAATCTCCCCTGTCCTCTccc                                       <  2:294643/149‑1 (MQ=255)                                                                                                      ttGAGATGACACTGTGATCTAAAAAGAGCGACTTCGGTCGCTCTTTTTTTTTCCTGATAATATGAATTTAGTGGACTGCGTCATGATTAAGAGAATTTTTGCCCTTCCTGTAATAGTACAACTTCCTACTCTCCTCTCACGACGaaaat                              >  2:98008/1‑148 (MQ=255)                                                                                                      ttGAGATGACACTGTGATCTAAAAAGAGCGACTTCGGTCGCTCTTTTTTTTACCTGATAAAATGAAGTTAAAGGACTGCGTCATGATTAAGAAAATTTTTGCCCTTCCGGTCATCGAACAAATCTCCCCTGTCCTCGCCCGTCGTAAAc                              >  1:476219/1‑149 (MQ=255)                                                                                                         agaTGACACTGTGACCTAAAAAGAGCGACTTCGGGCGCTCTTTTTTTTACCTGATAAAATGAAGTTAAAGGACTGCGTCATGATTAAGAAAATTTTTGCCCTTCCGGTCATCGAACAAATCTCTCCTGTCCTCTCCCGTCGTAAACTgg                           <  2:224800/149‑1 (MQ=255)                                                                                                          gaTGACACTGTGAAGTAACAAGAGCGACTCCGGGCGCTCTTTTTTTTACCTGATAAAATGCAGTTATATGACTGCGTCATGATTAAGAAAATTTTTGCCCTTTCGGTCATCGAACAAATCTCCCCTGTCCTCTCCCGTCGTAAACTGGa                          <  1:58602/149‑1 (MQ=255)                                                                                                               ccatgtgATCTAAAAAGAGAGAATTCGGTCGCTCTTTTTTTTACATGATAAAATGAAGTTAAAGGACTGCCTCATGATTAAGAAAATTTTTGCCCTTCCGGTCATCGAACAAATCTCCCCTGTCCTCTCCCGTCGTAAACTGGATGAAc                     <  2:329733/146‑1 (MQ=255)                                                                                                                        cTAAAAAGAGCGGTTTCTGTCGATCCTTTTTTTACCTGATAAAATGAATTTAAAGCACTGCGTCATGATTAAGAAAATGTTTGCCCTTCCGTTCATCCAACAAATCTCCCCTGTCCCCTCCCGTCGTAAACTGCATGAACTGGACCTCa            <  2:225599/149‑1 (MQ=255)                                                                                                                         tAAAAAGAGCGACTTCGGTCGCTCTTTTTTTTACCTGATAAAATGAAGTTAAAGGACTGCGTCATGATTAAGAAAATTTTTGCCCTTCCGGTCATCGAACAAATCTCCCCTGTCCTCTCCCGTCGTAAACTGGATGAACTGGACCTCAt           >  1:474840/1‑149 (MQ=255)                                                                                                                          aaaaaGAGCGACTTCGGTCGCTCTTTTTTTTACCTGATAAAATGAAGTTAAAGGACTGCGTCATGATTAAGAAAATTTTTGCCCTTCCGGTCATCGAACAAATCTCCCCTGTCCTCTCCCGTCGTAAACTGGATGAACTGGACCTCAtt          <  2:474146/149‑1 (MQ=255)                                                                                                                               gagCGACTTCGGTCGCTCTTTTTTTTACCTGATAAAATGAAGGTAAAGGACTGCGTCATGATTAAGAAAATTTTTGCCCTTCCGGTCATCGAACAATTATCCCCTGTCCTCTCCCGTCGTAAACTGGATGAACTGGACCTCATTGTGGt     <  2:319104/149‑1 (MQ=255)                                                                                                                                  cGACTTCGGTCGCTCTTTTTTTTACCTGATAAAATGAAGTTAAAGGACTGCGTCATGATTAAGAAAATTTTTGCCCTTCCGGTCATCGAACAAATCTCCCCTGTCCTCTCCCGTCGTAAACTGGATGAACTGGACCTCATTGTGGTCGa  <  2:289514/149‑1 (MQ=255)                                                                                                                                     |                                                                                                                                                  CGCTCTGAACGACAACTTCGTGAAACTGGTATCCTGGTACGACAACGAAACCGGTTACTCCAACAAAGTTCTGGACCTGATCGCTCACATCTCCAAATAAGTTGAGATGACACTGTGATCTAAAAAGAGCGACTTCGGTCGCTCTTTTTTTTACCTGATAAAATGAAGTTAAAGGACTGCGTCATGATTAAGAAAATTTTTGCCCTTCCGGTCATCGAACAAATCTCCCCTGTCCTCTCCCGTCGTAAACTGGATGAACTGGACCTCATTGTGGTCGA  >  NC_000913_3_pae_pgi/1863667‑1863944

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.