| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913_3_pae_pgi | 2230679 = | 57 (1.030) | 4 (0.080) | 4/266 | 7.6 | 6.9% | coding (56/399 nt) | yohJ | UPF0299 family inner membrane protein |
| ? | NC_000913_3_pae_pgi | 2230701 = | 55 (1.060) | coding (78/399 nt) | yohJ | UPF0299 family inner membrane protein | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
AGCGAATCAGTACGTAGCACCCCGGATTGACCCATTTTGCCGGAAGAATTTGCAAGGCCAGCAGGACAAACAGGATCAGCATCCCGATGATGCTGCCCGGAATGGTTACCGGTAGCAGGGAAGCAATGAAAATGCCTGCATACAGGCAGGCAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913_3_pae_pgi/2230831‑2230679‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcaggcatTTTCATTGCTTCCCTGCTACCGGTAACCATTCCGGGCAGCATCATCGGGATGCTGATCCTGTTTGTCCTGCTGGCCTTGCAAATTCTTCCGGCAAAATGGGTCAATCCGGGGTGCTACGTACTGATTCGCTATATGGCGCTATTG > NC_000913_3_pae_pgi/2230701‑2230845 agaGAAGCAGGACGTAGCTCCTGGCAGTGACCCATTTTGCCGGAAGAATTTGCAAGGCCAGCAGGACAAACAGGATCAGCATCCCGATGATGCTGCCCGGAATGGTTACCGGTAGCAGGGAAGCAATGAAAATGCCTGCATACAGGCAG > 2:940345/4‑149AGCGAATCAGTACGTAGCCCCCCGGATTGACCCATATTGCCGGAAGAATTTGCAAGGCCAGCAGGACAAACAGGATCAGCATCCCGATGAGGCTGCCCGGAATGGTTACCGGTAGCAGGGAAGCAATGAAAATGCCTGCATACTGGCAG < 2:841221/149‑1 GCGAATCAGTACGTAGCACCCCGGATTGACCCATTTTGCCGGAAGAATTTGCAAGGCCAGCAGGACAAACAGGATCAGCATCCCGATGATGCTGCCCGGAATGGTTACCGGTAGCAGGGAAGCAATGAAAATGCCTGCATACAGGCAGG < 2:216739/149‑1 GCGAATCAGTACGTAGCACCCCGGATTGACCCATTTTGCCGGAAGAATTTGCAAGGCCAGCAGGACAAACAGGATCAGCATCCCGATGATGCTGCCCGGAATGGTTACCGGTAGCAGGGAAGCAATGAAAATGCCTGCATACAGGCAGG > 2:780129/1‑149 AATCAGTACGTAGCACCCCGGATTGACCCATTTTGCCGGAAGAATTTGCAAGGCCAGCAGGACAAACAGGATCAGCATCCCGATGATGCTGCCCGGAATGGTTACCGGTAGCAGGGAAGCAATGAAAATGCCTGCATACAGGCAGGCAT > 2:910761/1‑149 CGGAATGGTTACCGGTAGCAGGGAAGCAATGAAAATGCCTGCATACAGGCAGGCATTTTCATTGCTTCCCTGCTACCGGTAACCATTCCGGGCAGCATCATCGGGATGCTGATCCTGTTTGTCCTGCTGGCCTTGC > 1:699881/1‑136 CGGAATGGTTACCGGTAGCAGGGAAGCAATGAAAATGCCTGCATACAGGCAGGCATTTTCATTGCTTCCCTGCTACCGGTAACCATTCCGGGCAGCATCATCGGGATGCTGATCCTGTTTGTCCTGCTGGCCTTGC < 2:699881/136‑1 ATGAAAATGCCTGCATACAGGCAGGCATTTTCATTGCTTCCCTGCTACCGGTAACCATTCCGGGCAGCATCATCGGGATGCTGATCCTGT < 1:306970/90‑1 ATGAAAATGCCTGCATACAGGCAGGCATTTTCATTGCTTCCCTGCTACCGGTAACCATTCCGGGCAGCATCATCGGGATGCTGATCCTGT > 2:306970/1‑90 AGGCATTTTCGTTGCTTCCCTGCTACCGGTAACCATTCCGGGCAGCATCATCGGGATGCTGATCCTGTTTGTCCTGCTGGCCTTGCAAATTCTTCCGGCAAAATGGGTCAATCCGGGGTGCTGCGTACTGATTCGCTTTATGGCGCTgt > 2:766844/1‑147 AGGCATTTTCATTGCTTCCCTGCTACCGGTAACCATTCCGGGCAGCATCATCGGGATGCTGATCCTGTTTGTCCTGCTGGCCTTGCAAATTCTTCCGGCAAAATGGGTCAATCCGGGGTGCTACGTACTGATTCGCTATATGGCGCTAT > 1:40839/1‑149 AGGCATTTTCATTGCTTCCCTGCTACCGGTAACCATTCCGGGCAGCATCATCGGGATGCTGATCCTGTTTGTCCTGCTGGCCTTGCAAATTCTTCCGGCAAAATGGGTCAATCCGGGGTGCTACGTACTGATTCGCTATATGGCGCTAT > 2:646019/1‑149 AGGCATTTTCATTGCTTCCCTGCTACCGGTAACCATTCCGGGCAGCATCATCGGGATGCTGATCCTGTTTGTCCTGCTGGCCTTGCAAATTCTTCCGGCAAAATGGGTCAATCCGGGGTGCTACGTACTGATTCGCTATATGG < 1:848517/143‑1 AGGCATTTTCATTGCTTCCCTGCTACCGGTAACCATTCCGGGCAGCATCATCGGGATGCTGATCCTGTTTGTCCTGCTGGCCTTGCAAATTCTTCCGGCAAAATGGGTCAATCCGGGGTGCTACGTACTGATTCGCTATATGG > 2:848517/1‑143 AGGCATTTTCATTGCTTCCCTGCTACCGGTAACCATTCCGGGCAGCATCATCGGGATGCTGATCCTGTTTGTCCTG < 2:628698/76‑1 AGGCATTTTCATTGCTTCCCTGCTACCGGTAACCATTCCGGGCAGCATCATCGGGATGCTGATCCTGTTTGTCCTG > 1:628698/1‑76 GCATTTTCATTGCTTCCCTGCTACCGGTAACCATTCCGGGCAGCATCATCGGGATGCTGATCCTGTTTGTCCTGCTGGCCTTGCAAATTCTTCCGGCAAAATGAGCCCGACCGGGGTGTGTCGTACTGATTGGGTATATGGCGCTATTG > 1:755314/1‑149 AGCGAATCAGTACGTAGCACCCCGGATTGACCCATTTTGCCGGAAGAATTTGCAAGGCCAGCAGGACAAACAGGATCAGCATCCCGATGATGCTGCCCGGAATGGTTACCGGTAGCAGGGAAGCAATGAAAATGCCTGCATACAGGCAGGCAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913_3_pae_pgi/2230831‑2230679‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcaggcatTTTCATTGCTTCCCTGCTACCGGTAACCATTCCGGGCAGCATCATCGGGATGCTGATCCTGTTTGTCCTGCTGGCCTTGCAAATTCTTCCGGCAAAATGGGTCAATCCGGGGTGCTACGTACTGATTCGCTATATGGCGCTATTG > NC_000913_3_pae_pgi/2230701‑2230845 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |