| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913_3_pae_pgi | 2230679 = | 57 (1.030) | 4 (0.080) | 4/266 | 7.6 | 6.9% | coding (56/399 nt) | yohJ | UPF0299 family inner membrane protein |
| ? | NC_000913_3_pae_pgi | 2230701 = | 55 (1.060) | coding (78/399 nt) | yohJ | UPF0299 family inner membrane protein | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
GAAAAAATAAGCGCTGATTTCTTAATGTGATCGGTAGCACGTTTTACGAATTAATTGTATGATGAATCCATCTCATCTGGGGTGTTGATTATGAGTAAGACACTGAACATTATCTGGCAATATTTACGCGCTTTCGTCCTGATTTATGCCTGCCTGTATGCAGGCATTTTCATTGCTTCCCTGCTACCGGTAACCATTCCGGGCAGCATCATCGGGATGCTGATCCTGTTTGTCCTGCTGGCCTTGCAAATTCTTCCGGCAAAATGGGTCAATCCGGGGTGCTACGTACTGATT > NC_000913_3_pae_pgi/2230534‑2230827 | gAAAAAATAAGCGCTGATTTCTTAATGTGATCGATAGCACGTTTTACGAATTAATTGTATAATGAATTCATCTCATCTGGGGAGTTGATTATTAGTGAGCCACTGAACATTATGTGGCAGTATTTACGACTTTTCGGCCAGAGTTAtcc > 2:320603/1‑147 (MQ=255) aaaTAAGCGCTGATTTCTTAATGTGATCGGTAGCACGTTTTACGAATTAATTGTATGATGAATCCATCTCATCTGGGGTGTTGATTATGAGTAAGACACTGAACATTATCTGGCAATATTTACGCGCTTTCGTCCTGATTTAtgcctgc < 1:120192/149‑1 (MQ=255) aaaTAAGCGCTGATTTCTTAATGTGATCGGGAGCACGTTTTACGAATTAATTGTATGATGAATCCATCTCATCTGGGGTGTTGATTATGAGTAAGACACTGAACATTATCTGGCAATATTTACGCGCTTTCGTCCTGATTTAtgcctgc < 1:278627/149‑1 (MQ=255) gcgcTGATTTCTGAATGTGATCGGTAGCACGTTTTACGAATTAATTGTCTGGCAGGGCCATCTCATCTGGGGTGTTGATTATGAGTAAGACACTGAACATTATCTGGCAATATTTACGCGCTTTCGTCCTGATTTATGCCTGCCTGTAt < 1:273146/149‑1 (MQ=255) cTGATTTCTTAATGTGATCGGTAGCACGTTTTACGAATTAATTGTAGGATGAATCCATCTCATCTGGGGTGTTGATTATGAGTAAGACACTGAACATTATCTGGCAATATTTACGCGCTTTCGTCCTGATTTATGCCTGCCTGTATGCa < 1:79288/149‑1 (MQ=255) tgttttCTTAATGTGATCGGTGGCACGTTTTACGCATTAATTGTATGATGAATCCATCTCATCTGGGGTGGTGATTATGAGTAAGACACTGAATATTATCTGGCAATATTTACGCGCTTTCGTCCTGATTTATGCCTGCCTGTATGCAg < 2:441495/146‑1 (MQ=255) tGATTTCTTAATGTGATCGGTAGCACTTTTTACGAATTAATTGTATGATGAATCCATCTCATCTGGGGTGTTGATTATGAGTAAGACACTGAACATTATCTGGCAATATTTACGCGCTTTCGTCCTGATTTATGCCTGCCTGTATGCAg < 1:25731/149‑1 (MQ=255) tttCTTAATGGGATAGGTAGCACGTTTTAGGGATTAATTGTGTGATGACTTCATCGCATCTGGGGTGTTGATTTTGAGTAAGACACTGAACATTATTTGGCAATATTTACGCTCTTCAGTCCTATTTTATGCCTACCTGTATGCAGGCa > 2:99585/1‑149 (MQ=255) ttCTTAATGTGATCGGTAGCACGTTTTACGAATTAATTGTATGATGAATCCATCTCATCTGGGGTGTTGATTATGAGTAAGACACTGAACATTATCTGGCAATATTTACGCGCTTTCGTCCTGATTTATGCCTGCCTGTATGCAGGCAt > 1:392109/1‑149 (MQ=255) aaTGTGATCGGTAGCACGTTTTACGAATTAATTGTATGATGAATCCATCTCATCTGGGGTGTTGATTATGAGTAAGACACTGAACATTATCTGGCAATATTTACGCGCTTTCGTCCTGATTTATGCCTGCCTGTATGCAGGCATTTTCa < 2:22652/149‑1 (MQ=255) aaTGTGATCGGTAGCACGTTTTACGAATTAATTGTATGATGAATCCATCGCACCTTGGGTGGTGATTATGAGTAAGACACTGAACATTATCTGGCAATATTTACGCGCTTTCGTCCTGATTTATGCCTGCCTGTATGCAGGCATTTTCa > 2:495314/1‑149 (MQ=255) tgtgGTCGGTAGCACGTTTTACGAATTAATTGTATGATGAATCCATCTCAACTGGTGAAATTGGGATGAGTAAGACACTGAACATTATCTGGCAATATTTACGCGCTTTCGTCCTGATTTATGCCTGCCTGTATGCAGGCATTTTCAtt < 1:225829/149‑1 (MQ=255) cGGTAGCACGTTTTACGAATTAATTGTATGATGAATCCATCTCATCTGGGGTGTTGATTATGAGTAAGACACTGAACATTATCTGGCAATATTTACGCGCTTTCGTCCTGATTTATGCCTGCCTGTATGCAGGCATTTTCATTGCTTcc < 2:596736/149‑1 (MQ=255) cGGTAGCACGTGTTACGAATTAATTGTATGATGAATCCATCTCATCTGGGGTGTCTATCATGAGTAAGACACTCAACATTATCTGGCAAGATTCACGCGCTTTCGTCCTGATTTATGCCTGCCTGTATGCAGGCATTTTCATTGCTTcc < 1:437582/149‑1 (MQ=255) gTAGCACGTTTTACGAATTAATTGTATGATGAATCCATCTCATCTGGGGTGTTGATTATGAGTAAGACACTGAACATTATCTGGCAATATTTACGCGCTTTCGTCCTGATTTATGCCTGCCTGTATGCAGGCATTTTCATTGCTTCCCt < 2:266832/149‑1 (MQ=255) gCACGTTTTACGAATTAATTGTATGATGAATCCATCTCATCTGGGGTGTTGATTATGAGTAAGACACTGAACATTATCTGGCAATATTTACGCGCTTTCGTCCTGATTTATGCCTGCCTGTATGCAGGCATTTTCATTGCTTCCCTGCt > 1:29252/1‑149 (MQ=255) acattttACAAATTAATAGTAAGATGAATCAATCTCATCTGGGGCGTTGATTATCAGTAAGACACTGAACATTATCTGGCAATATTTACGCGCTTTATTCCTGAATTATGCTTGCCTTTATGCAGGCATTTTCATTGCTTCCCCTCTAc > 2:422215/4‑149 (MQ=255) gTTTTACGAATTAATTGTATGATGAATCCATCTCATCTGGGGTGTTGATTATGAGTAAGACACTGAACATTATCTGGCAATATTTACGCGCTTTCGTCCTGATTTATGCCTGCCTGTATGCAGGCATTTTCATTGCTTCCCTGCTACCg < 2:370116/149‑1 (MQ=255) ttggcGAATTAATTGTATGGTGTAGCCATTTCATTTGGGGTGTTGATTATGAGTAAGTCACTTGACATTATCTCGCAATATTTGCGCGCTTTCGTCCTGATTTATGCCTTCCTGTATGCAGGCATGTTCATTGCTTCCCTGCTACCGGt < 2:419582/145‑1 (MQ=255) aCGAATTAATTGTATGATGAATCCATCTCATCTGGGGTGTTGATTATGAGTAAGACACTGAACATTATCTGGCAATATTTACGCGCTTTCGTCCTGATTTATGCCTGCCTGTATGCAGGCATTTTCATTGCTTCCCTGCTACCGGTAAc < 1:727620/149‑1 (MQ=255) gAATTAATTGTATGATGAATCCATCTCATCTGGGGTGTTGATTATGAGTAAGACACTGAACATTATCTGGCAATATTTACGCGCTTTCGTCCTGATTTATGCCTGCCTGTATGCAGGCATTTTCTTTGCTTCTCTGGTATCGGTTACCa > 1:886117/1‑149 (MQ=255) aattaattGTATGATGAATCCATCTCATCTGGGGTGTTGATTATGAGTAAGACACTGAACATTATCTGGCAATATTTACGCGCTTTCGTCCTGATTTATGCCTGCCTGTATGCAGGCATTTTCATTGCTTCCCTGCTACCGGTAACCAt > 1:182062/1‑149 (MQ=255) aattaattGTATGATGAATCCATCTCATCTGGGGTGTTGATTATGAGTAAGACACTGAACATTATCTGGCAATATTTACGCGCTTTCGTCCTGATTTATGCCTGCCTGTATGCAGGCATTTTCATTGCTTCCCTGCTACCGGTAACCAt > 1:780129/1‑149 (MQ=255) taattGTATGATGAATCCATCTCATCTGGGGTGTTGATTATCAGTAAGACACTGAACATTATCTGGCAATATTTACGCGCTTTCGTCCTGATTTATGCCTGCCTGTATGCAGGCATTTTCATTGCTTCCCTGCTACCGGTAACCATTcc < 2:2241/149‑1 (MQ=255) ttGTATGATGAATCCATCTCATCTGGGGTGTTGATTATGAGTAAGACACTGAACATTATCTGGCAATATTTACGCGCTTTCGTCCTGATTTATGCCTGCCTGTATGCAGGCATTTTCATTGCTTCCCTGCTACCGGTAGCCATTCAggg > 1:610686/1‑149 (MQ=255) tgaATCCATCTCATCTGGGGTGTTGATTATGAGTAAGACACTGAACATTATCTGGCAATATTTACGCGCTTTCGTCCTGATTTATGCCTGCCTGTATGCAGGCATTTTCATTGCTTCCCTGCTACCGGTAACCATTCCGGGCAGcatca > 1:541615/1‑149 (MQ=255) ccATCTCATCTGGGGTGTTGATTATGAGTAAGACACTGAACATTATCTGGCAATATTTACGCGCTTTCGTCCTTATTTATGCCTGCCTGTATGCAGGCATTTTCATTGCTTCCCTGCTACCGGTAACCATTCCGGGCAGCATCATCggg < 1:134304/149‑1 (MQ=255) ccATCTCATCTGGGGTGTTGATTATGAGTAAGACACTGAACATTATCTGGCAATATTTACGCGCTTTCGTCCTGATTTATGCCTGCCTGTATGCAGGCATTTTCATTGCTTCCCTGCTACCGGTAACCATTCCGGGCAGCATCATCggg < 2:29252/149‑1 (MQ=255) catctcatctGGGGTGTTGATTATGAGTAAGACACTGAACATTATCTGGCAATATTTACGCGCTTTCGTCCTGATTTATGCCTGCCTGTATGCAGGCATTTTCATTGCTTCCCTGCTACCGGTAACCATTCCGGGCAGCATCATCGGGa > 2:642319/1‑149 (MQ=255) atctGGGGTGTTGATTATGAGTAAGACACTGAACATTATCTGGCAATATTTACGCGCTTTCGTCCTGATTTATGCCTGCCTGTATGCAGGCATTTTCATTGCTTCCCTGCTACCGGTAACCATTCCGGGCAGCATCATCGGGATGCTGa > 1:300950/1‑149 (MQ=255) atctGGGGTGTTGATTATGAGTAAGACACTGAACATTATCTGGCAATATTTACGCGCTTTCGTCCTGATTTATGCCTGCCTGTATGCAGGCATTTTCATTGCTTCCCTGCTACCGGTAACCATTCCGGGCAGCATCATCGGGATGCTGa > 1:301137/1‑149 (MQ=255) ctGGGGTGTTGATTATGAGTAAGACACTGAACATTATCTGGCAATATTTACGCGCTTTCGTCCTGATTTATGCCTGCCTGTATGCAGGCATTTTCATTGCTTCCCTGCTACCGGTAACCATTCCGGGCAGCATCATCGGGATGCTGATc < 2:16118/149‑1 (MQ=255) ggTGTTGATTATGAGTAAGACACTGAACATTATCTGGCAATATTTACGCGCTTTCGTCCTGATTTATGCCTGCCTGTATGCAGGCATTTTCATTGCTTCCCTGCTACCGGTAACCATTCCGGGCAGCATCATCGGGATGCTGATCCTGt < 1:966636/149‑1 (MQ=255) tgtTGATTATGAGAAAGACACTGAACATTATCTGGCAATATTTACGCGCTTTCGTCCTGATTTATGCCTGCCTGTATGCAGGCATTTTCATTGCTGCCCTGCTACCGGTAACCATTCCGGGCAGCATCATCGGGATGCTGATCCTGttt < 2:558792/149‑1 (MQ=255) gtTGATTATGAGTAAGACACTGAACATTAGCTGGCAATATTTACGCGCTTTCGTCCTGATTTATGCCTGCCTGTATGCAGGCATTTTCATTGCTTCCCTGCTACCGGTAACCATTCCGGGCAGCATCATCGGGATGCTGATCCTGTTTg < 1:547850/149‑1 (MQ=255) ttGATTATGAGTAAGACACTGAACATTATCTGGCAATATTTACGCGCTTTCGTCCTGATTTATGCCTGCCTGTATGCAGGCATTTTCATTGCTTCCCTGCTACCGGTAACCATTCCGGGCAGCATCATCGGGATGCTGATCCTGTTTGt > 2:815312/1‑149 (MQ=255) gAGTAAGACACTGAACATTATCTGGCAAAATTTACGCTGGTTCTTCCTGATTTATGCCTGCCTGTATGCAGGCATTTTCATTGCTTCCCTGCTACCGGTAACCATTCCGGGCAGCATCATCGGGATGCTGATCCTGTTTGTCCTGCTgg < 1:179697/149‑1 (MQ=255) gTAAGACACTGAACATTATCTGGCAATATTTACGCGCTTTCGTCCTGATTTATGCCTGCCTGTATGCAGGCATTTTCATTGCTTCCCTGCTACCGGTAACCATTCCGGGCAGCATCATCGGGATGCTGATCCTGTTTGTCCTGCTGGcc > 1:940345/1‑149 (MQ=255) gTAAGACACTGAACATTATCTGGCAATATTTACGCGCTTTCGTCCTGATTTATGCCTGCCTGTATGCAGGCATTTTCATTGCTTCCCTGCTACCGGTAACCATTCCGGGCAGCATCATCGGGATGCTGATCCTGTTTGTCCTGCTGGcc < 1:642319/149‑1 (MQ=255) aGACACTGAACATTATCTGGCAATATTTATGCGCTTTCGTCCTGATTTATGCATGCCTGTATGCAGGCATTTTCATTGCTTCCCTCCTACCGGTAACCATTCCGGGCAGCATCATCGGGATGCTGATCCTCTTTCTCCTGCTGGCCTTg > 2:910836/1‑149 (MQ=255) acTGAACATTATCTGGCAATATTTACGCGCTTTCGTCCTGATTTATGCCTGCCTTTATGCAGGCATTTTCATTGCTTCCCTGCTACCGGTCACCATTCCGGGCAGCATCATCGGGATGCTGATCCTGTTTGTCCTGTTGGCCTTGCaaa > 1:337686/1‑149 (MQ=255) tGAACATTATCTGGCAATATTTACGCGCTTTCGTCCTGATTTATGCCTGCCTGTATGCAGGCATTTTCATTGCTTCCCTGCTACCGGTAACCATTCCGGGCAGCATCATCGGGATGCTGATCCTGTTTGTCCTGCTGGCCTTGCAAAtt > 2:125420/1‑149 (MQ=255) gAACATTATCTGGCAATATTTACGCGCTTTCGTCCTGATTTATGCCTGCCTGTATGCAGGCATTTTCATTGCTTCCCTGCTACCGGTAACCATTCCGGGCAGCATCATCGGGATGCTGATCCTGTTTGTCCTGCTGGCCTTGCAAAtt > 1:561453/1‑148 (MQ=255) gAACATTATCTGGCAATATTTACGCGCTTTCGTCCTGATTTATGCCTGCCTGTATGCAGGCATTTTCATTGCTTCCCTGCTACCGGTAACCATTCCGGGCAGCATCATCGGGATGCTGATCCTGTTTGTCCTGCTGGCCTTGCAAAtt < 2:561453/148‑1 (MQ=255) aTTATCTGGCAATATTTACGCGCTTTCGTCCTGATTTATGCCTGCCTGTATGCAGGCATTTTCATTGCTTCCCTGCTACCGGTAACCATTCCGGGCAGCATCATCGGGATGCTGATCCTGTTTGTCCTGCTGGCCTTGCAAATTCTTcc > 1:314843/1‑149 (MQ=255) cTGGCAATATTTACGCGCTTTCGTCCTGATTTATGCCTGCCTGTATGCAGGCATTTTCATTGCTTCCCTGCTACCGGTAACCATTCCGGGCAGCATCATCGGGATGCTGATCCTGTTTGTCCTGCTGGCCTTGAAAATTCTTCCGGcca > 1:247428/1‑147 (MQ=255) tGGCAATATTTACGCGCTTTCGTCCTGATTTATGCCTGCCTGTATGCAGGCATTTTCATTGCTTCCCTGCTACCGGTAACCATTCCGGGCAGCATCATCGGGATGCTGATCCTGTTTGTCCTGCTGGCCTTGCAAATTCTTCCGGCaaa > 2:466827/1‑149 (MQ=255) cAATATTTACGCGCTTTCGTCCTGATTTATGCCTGCCTGTATGCAGGCATTTTCATTGCTTCCCTGCTACCGGTAACCATTCCGGGCAGCATCATCGGGATGCTGATCCTGTTTGTCCTGCTGGCCTTGCAAATTCTTCCGGCAAAATg < 2:863386/149‑1 (MQ=255) atatTTACGCGCTTTCGTCCTGATTTATGCCTGCCTGTATGCAGGCATTTTCATTGCTTCCCTGCTACCGGTAACCATTCCGGGCAGCATCATCGGGATGCTGATCCTGTTTGTCCTGCTGGCCTTGCAAATTCTTCCGGCAAAATggg > 2:394016/1‑149 (MQ=255) atTTACGCGCTTTCGTCCTGATTTATGCCTGCCTGTATGCAGGCATTTTCATTGCTTCCCTGCTACCGGTAACCATTCCGGGCAGCATCATCGGGATGCTGATCCTGTTTGTCCTGCTGGCCTTGCAAATTCTTCCGGCAAAATGGGTc > 1:910761/1‑149 (MQ=255) gcgcTTTCGTCCTGATTTATGCCTGCCTGTATGCAGGCATTTTCATTGCTTCCCTGCTACCGGTAACCATTCCGGGCAGCATCATCGGGATGCTGATCCTTTTTGTCCTGCTGGCCTTGCAGATTCTTCCGGCAAAATGGGTCaaacag > 1:266617/1‑145 (MQ=255) cGTCCTGATTTATGCCTGCCTGTATGCAGGCATTTTCATTGCTTCCCTGCTACCGGTAACCATTCCGGGCAGCTTTTTCGGGATGCTGATCCTGTTTGTCCTGCTGGCCTTGCAAATTCTTCCGGCAAAATGGGTCAATCCGGGGTGCt < 1:2498/149‑1 (MQ=255) tCCTGATTTATGCCTGCCTGTATGCAGGCATTTTCATTGCTTCCCTGCTACCGGTAACCATTCCGGGCAGCATCATCGGGATGCTGATCCTGTTTGTCCTGCTGGCCTTGCAAATTCTTCCGGCAAAATGGGTCACTCCGGGGTGCtcc > 2:663152/1‑147 (MQ=255) tGATTTATGCCTGCCTTTATGCAGGCATTTTCATTGCTTCCCTGCTACCGGTAACCATTCCGGGCAGCATCATCGGGATGCTGATCCTGTTTGTCCTGCTGGCCTTGCAAATTCTTCCGGCAAAATGGGTCAATCCGGGGTGCTACGTa > 2:604889/1‑149 (MQ=255) tGATTTATGCCTGCCTGTATGCAGGCATTTTCATTGCTTCCCTGCTACCGGTAACCATTCCGGGCAGCATCATCGGGATGCTGATCCTGTTTGTCCTGCTGGCCTTGCAAATTCTTCCGGCAAAATGGGTCAATCCGGGGTGCTACGTa > 2:369308/1‑149 (MQ=255) gATTTATGCCTGCCTGTATGCAGGCATTTTCATTGCTTCCCTGCTACCGGTAATAAAACCCTTCAGCATCATCGGGATGCTGATCCTGTTTGTCCTGCTGGCCTTGCAAATTCTTCCGGCAAAATGGGTCAATCCGGGGTGCTACGTAc < 1:950246/149‑1 (MQ=255) gATTTATGCCTGCCTGTATGCAGGCATTTTCATTGCTTCCCTGCTACCGGTAAGCATTCCGGGCAGCATCATCGGGATGCTGATCCTGTTTGTCCTGCTGGCCTTGCAAATTCTTCCGGCAAAATGGGTCAATCCGGGGTGCTGCGTAc > 1:643842/1‑149 (MQ=255) aTGCCTGCCTGTATGCAGGCATTTTCATTGCTTCCCTGCTACCGGTAACCATTCCGGGCAGCATCATCGGGATGCTGATCCTGTTTGTCCTGCTGGCCTTGCAAATTCTTCCGGCAAAATGGGTCAATCCGGGGTGCTACGTACTGAtt < 2:910761/149‑1 (MQ=255) | GAAAAAATAAGCGCTGATTTCTTAATGTGATCGGTAGCACGTTTTACGAATTAATTGTATGATGAATCCATCTCATCTGGGGTGTTGATTATGAGTAAGACACTGAACATTATCTGGCAATATTTACGCGCTTTCGTCCTGATTTATGCCTGCCTGTATGCAGGCATTTTCATTGCTTCCCTGCTACCGGTAACCATTCCGGGCAGCATCATCGGGATGCTGATCCTGTTTGTCCTGCTGGCCTTGCAAATTCTTCCGGCAAAATGGGTCAATCCGGGGTGCTACGTACTGATT > NC_000913_3_pae_pgi/2230534‑2230827 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |