New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913_3_pae_pgi	= 4433807	90 (1.630)	4 (0.080)	4/268	7.7	4.5%	noncoding (52/111 nt)	REP334 (repetitive extragenic palindromic) element; contains 3 REP sequences	REP334 (repetitive extragenic palindromic) element; contains 3 REP sequences
	?	NC_000913_3_pae_pgi	= 4433825	NA (NA)					noncoding (70/111 nt)	REP334 (repetitive extragenic palindromic) element; contains 3 REP sequences	REP334 (repetitive extragenic palindromic) element; contains 3 REP sequences
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

GAGCAGGTGAGCGAAAAGGTTGCTGCACTGGCGGACTGGATTGAGTTGAATTTGCCCGAGGTGTTGGCGGTGCGGGATGAACGTGCGGCATAACTGCCGGATGCGCTGAGCTTATCTGGTCTACGGTGCATGGCTTGTAGGGCGGATAAGATGCGCCAGCATCGCATCCGCCAATAAATGCCGGATGCGGTTGATGATTTATAGGCCGAAAAAGAAGTGTTT‑TACTTACTCAAATCCACCTGATAAATCGCAAACCCGATATCATCGGTCGCGACTTTATTCATCGGATACTGCC  >  NC_000913_3_pae_pgi/4433661‑4433955                                                                                                                                                   |                                                                                                                                                      gAGCAGGTGAGCGAAAAGGTTGCTGCACTGGCGGACTGGATTGAGTTGAATTTGCCCGAGGTGTTGGCGGTGCGGGATGAACGTGCGGCATAACTGCCGGATGCGCTGAGCTTATCTGGTCTACGGTGCATGGCTTGTAGGGCGGATaa                                                                                                                                                     >  2:670967/1‑149 (MQ=255)    cAGGTGAGCGAAAAGGTTGCTGCACTGGCGGACTGGATTGAGTTGAATTTGCCCGAGGTGTTGGCGGTGCGGGATGAACGTGCGGCATAACTGCCGGATGCGCTGAGCTTATCTGGTCTACGGTGCATGGCTTGTAGGGCGGATAAGAt                                                                                                                                                  <  1:591761/149‑1 (MQ=255)        tGAGCGAAAAGGTTGCTGCACTGGCGGACTGGATTGAGTTGAATTTGCCCGAGGTGTTGGCGGTGCGGGATGAACGTGCGGCATAACTGCCGGATGCGCTGAGCTTATCTGGTCTACGGTGCATGGCTTGTAGGGAGGATAAGATgcgc                                                                                                                                              >  1:448034/1‑149 (MQ=255)        ggAGCGAAAAGGTTGCTGCACTGGCGGACTGGATTGAGTTGAATTTGCCCGAGGTGTTGGCGGTGCGGGATGAACGTGCGGCATAACTGCCGGATGCGCTGAGCTTATCTGGTCTACGGTGCATGGCTTGTAGGGCGGATAAGATgcgc                                                                                                                                              <  2:274152/148‑1 (MQ=255)               aaaGGTTGCTGCACTGGCGGACTGGATTGAGTTGAATTTGCCCGAGGTGTTGGCGGTGCGGGATGAACGTGCGGCATAACTGCCGGATGCGACGAGCTTATCTGGTCTACGGTGCATGGCTTGTAGGGCGGATAAGATGCGCCAgcatc                                                                                                                                       <  1:522753/149‑1 (MQ=255)                    ttGCTGCACTGGCGGACTGGATTGAGTTGAATTTGCCCGAGGTGTTGGCGGTGCGGGATGAACGTGCGGCATAACTGCCGGATGCGCTGAGCTTATCTGGTCTACGGTGCATGGCTTGTAGGGCGGATAAGATGCGCCAgcatcgcatc                                                                                                                                  >  2:750713/1‑149 (MQ=255)                                  gACTGGATTGAGTTGAATTGGCCCGAGGTGTTGGCGGTGCGGGATGAACGTGCGGCATAACTGCCGGATGCGCTGAGCTTATCTGGTCTACGGTGCATGGCTTGTAGGGCGGATAAGATGCGCCAGCATCGCATCCGCCAATAAATGcc                                                                                                                    <  1:297102/149‑1 (MQ=255)                                    cTGGATTGAGTTGAATTTGCCCGAGGTGTTGGCGGTGCGGGATGAACGTGCGGCATAACTGCCGGATGCGCTGAGCTTATCTGGTCTACGGTGCATGGCTTGTAGGGCGGATAAGATGCGCCAGCATCGCATCCGCCAATAAATGCCgg                                                                                                                  >  2:167616/1‑149 (MQ=255)                                     tGGATTGAGTTGAATTTGCCCGAGGTGTTGGCGGTGCGGGATGAACGTGCGGCATAACTGCCGGATGCGCTGAGCTTATCTGGTCTACGGTGCATGGCTTGTAGGGCGGATAAGATGCGCCAGCATCGCATCCGCCCATAAATGCCGGa                                                                                                                 >  1:4507/1‑149 (MQ=255)                                     tGGATTGAGTTCAAGTAGCCCGAGGTGTTCGCGGTGCGGGGTGAACGTGAGGCATAACTGCCTGATGCGCTGAGCTTATCTGCTCGACGGTGCATGGCTTGTAGGGCGGATAAGGTGCGCCAGCCGCGCATACGCCAACAAATGCCGGa                                                                                                                 >  2:876665/1‑149 (MQ=255)                                       gATTGAGTTGAATTTGCCCGAGGTGTTGGCGGTGCGGGATGAACGTGCGGCATAACTGCCGGATGCGCTGAGCTTATCTGGTCTACGGTGCATGGCTTGTAGGGCGGATAAGATGCGCCAGCATCGCATCCGCCAATAAATGCCGGATg                                                                                                               >  1:596816/1‑149 (MQ=255)                                        aTTGAGTTGAATTTGCCCGAGGTGTTGGCGGTGCGGGATGAACGTGCGGCATAACTGCCGGATGCGCTGAGCTTATCTGGTCTACGGTGCATGGCTTGTAGGGCGGATAAGATGCGCCAGCATCGCATCCGCCAATAAATGCCGGATGc                                                                                                              >  2:596729/1‑149 (MQ=255)                                         ttGAGTTGAATTTGCCCGAGGTGTTGGCGGTGCGGGATGAACGTGCGGCATAACTGCCGGATGCGCTGAGCTTATCTGGTCTACGGTGCATGGCTTGTAGGGCGGATAAGATGCGCCAGCATCGCATCCGCCAATAAATGCCGGATGCg                                                                                                             <  1:358571/149‑1 (MQ=255)                                         ttGAGTTGAATTTGCCCGAGGTGTTGGCGGTGCGGGATGAACGTGCGGCATAACTGCCGGATGCGCTGAGCTTATCTGGTCTACGGTGCATGGCTTGTAGGGCGGATAAGATGCGCCAGCATCGCATCCGCCAATAAATGCCGGATGCg                                                                                                             >  1:524516/1‑149 (MQ=255)                                              ttGAATTTGCCCGAGGTGTTGGCGGTGCGGGATGAACGTGCGGCATAACTGCCGGATGCGCTGAGCTTATCTGGTCTACGGTGCATGGCTTGTAGGGAGGTTCAGTTATGCCAGCATCGCATCCGCCAATCAATGCCGGATGCGGTtga                                                                                                        >  1:75056/1‑149 (MQ=255)                                                 taTTTGCCCGTGGTGTTGGCGGTGCGGTATGAACGTGCGGCATAATTGCCGGTTGCGCTGAGCTTATCTGGTCTACGGTGCATGGCTTGTAGGGCGTATAAGATGCGCCAGCATCGCATTCGCCAATAAATGCCGGATGCGGTtgatga                                                                                                     <  2:286876/148‑1 (MQ=255)                                                  aTTTGCCCGAGGTTGTGGCGGTGCGGGATCAACGTGCGGCATAACTGCCGGATGTGCTGAGCTTATCTGGTCTACGGTGCATGGCTTGTAGGGCGGATAAGATGCGCCAGCATCGCATCCGCCAATAAATGCCGGATGCGGTTgatgat                                                                                                    <  1:834990/149‑1 (MQ=255)                                                   tttGCCCGAGGTGTTGGCGGTGCGGGATGAACGTGCGGCATAACTGCCGGATGCGCTGAGCTTATCTGGTCTACGGTGCATGGCTTGTAGGGCGGATAAGATGCGCCAGCATCGCATCCGCCAATAAATGCCGGATGCGGTTGATGAtt                                                                                                   <  1:670967/149‑1 (MQ=255)                                                       cccGAGGTGTTGGCGGTGCGGGATGAACGTGCGGCATAACTGCCGGATGCGCTGAGCTTATCTGGTCTACGGTGCATGGCTTGTAGGGCGGATAAGATGCGCCAGCATCGCATCCGCCAATAAATGCCGGATGCGGTTGGTGATTtata                                                                                               >  1:881306/1‑149 (MQ=255)                                                        ccGAGGTGTTGGCGGTGCGGGATGAACGTGCGGCATAACTGCCGGATGCGCTGAGCTTATCTGGTCTACGGTGCATGGCTTGTAGGGCGGATAAGATgcgc                                                                                                                                              >  1:287440/1‑101 (MQ=255)                                                        ccGAGGTGTTGGCGGTGCGGGATGAACGTGCGGCATAACTGCCGGATGCGCTGAGCTTATCTGGTCTACGGTGCATGGCTTGTAGGGCGGATAAGATgcgc                                                                                                                                              <  2:287440/101‑1 (MQ=255)                                                        ccGAGGTGTTGGCGGTGCGGGATGAACGTGCGGCATAACTGCCGGATGCGCTGAGCTTATCTGGTCTACGGTGCATGGCTTGTAGGGCGGATAAGATGCGCCAGCATCGCATCCGCCAATAAATGCCGGATGCga                                                                                                            >  2:110835/1‑134 (MQ=255)                                                        ccGAGGTGTTGGCGGTGCGGGATGAACGTGCGGCATAACTGCCGGATGCGCTGAGCTTATCTGGTCTACGGTGCATGGCTTGTAGGGCGGATAAGATGCGCCAGCATCGCATCCGCCAATAAATGCCGGATGCga                                                                                                            <  1:110835/135‑2 (MQ=255)                                                        ccGAGGTGTTGGCGGTGCGGGATGAACGTGCGGCATAACTGCCGGATGCGCTGAGCTTATCTGGTCTACGGTGCATGGCTTGTAGGGCGGATAAGATGCGCCAGCATCGCATCCGCCAATAAATGCCGGATGCGGTTGATGATTTATAg                                                                                              >  2:289479/1‑149 (MQ=255)                                                             gtgtTGGCGGTGCGGGATGAACGTGCGGCATAACTGCCGGATGGGGAAAGCCAATCAGCCCACAGGGTCATGACTTGTAGGGCGGATAAGATGCGCCAGCATCGCATCCGCCAATAAATGCCGGATGCGGTTGATGATTTATAGGCCGa                                                                                         >  1:476368/1‑149 (MQ=255)                                                                ttGGCGGTGCGGGATGAACGTGCGGCATAACTGCCGGATGCGCTGAGCTTATCTGGTCTACGGTGCATGGCTTGTAGGGCGGATAAGATGCGCCAGCATCGCATCCGCCAATAAATGCCGGATGCGGTTGGTGATTTATAGGCCGaaaa                                                                                      >  1:293968/1‑149 (MQ=255)                                                                ttGGCGGTGCGGGATGAACGTGCGGCATAACTGCCGGATGCGCTGAGCTTATCTGGTCTACGGTGCATGGCTTGTAGGGCGGATAAGATGCGCCAGCATCGCATCCGCCAATAAATGCCGGATGCGGTTGATGATTTATAGGCCGaaaa                                                                                      >  2:628932/1‑149 (MQ=255)                                                                    cGGTGCGGGATGAACGTGCGGCATAACTGCCGGATGCGCTGAGCTTATCTGGTCTACGGTGCATGGCTTGTAGGGCGGATAAGATGCGCCAGCATCGCATCCGCCAATAAATGCCGGATGCGGTTGATGATTTATAGGCCGAAAaagaa                                                                                  <  1:696405/149‑1 (MQ=255)                                                                    cGGTGCGGGATGAACGTGCGGCATAACTGCCGGATGCGCTGAGCTTATCTGGTCTACGGTGCATGGCTTGTAGGGCGGATAAGATGCGCCAGCATCGCATCCGCCAATAAATGCCGGATGCGGTTGATGATTTATAGGCCGAAAaagaa                                                                                  <  1:750713/149‑1 (MQ=255)                                                                          gggATGAACGTGCGGCATAACTGCCGGATGCGCTGAGCTTATCTGGTCTACGGTGCATGGCTTGTAGGGCGGATAAGATGCGCCAGCATCGCATCCGCCAATAAATGCCGGATGCGGTTGATGATTTATAGGCCGAAAAAGAAGTGttt                                                                            <  1:504590/149‑1 (MQ=255)                                                                           ggATGAACGTGCGGCATAACTGCCGGATGCGCTGAGCTTATCTGGTCTACGGTGCATGGCTTGTCGCGCGGAGAAGATGCGCCAGCATCGCATCCGCCAATAAATGCCGGATGCGGTTGATGATTTATAGGCCGAAAAAGAAGTGttt‑t                                                                          >  1:431054/1‑149 (MQ=255)                                                                                 acgtcgggCATAACTGCCGGATGCGTTGAGCTTATCTGGTCTACGGTGCATGGCTTGGAGGGCGGATAAGATGCGCAAGCATCGCATCCGCCAATAAATGCCGGATGCGGTTGATGATTTATAGGCCGAAAAAGAAGTGTTt‑tacttac                                                                    <  2:293968/143‑1 (MQ=39)                                                                                 aCGTGCGGCATAACTGCCGGATGCGCTGAGCTTATCTGGTCTACGGTGCATGGCTTGTAGGGCGGATAAGATGCGCCAGCATCGCATCCGCCAATAAATGCCGGATGCGGTTGATGATTTATAGGCCGAAAAAGAAGTGTTt‑tacttac                                                                    <  1:289479/149‑1 (MQ=255)                                                                                 aCGTGCGGAATAACTGCGGGATGCGCTGAGCGTATCTGGTCTACGGTGCATGGCTTGTAGGGCGGATAAGATGCGCCAGCATCGCATCCGCCAATAAATGCCGGATGCGGTTGATGATTTATAGGCCGAAAAAGAAGTGTTt‑tacttac                                                                    <  2:759569/149‑1 (MQ=255)                                                                                     gcagCATAACGGGCGGAGGCGCAGATCGTATCTGGTCAGCGAATAATTACTTGGAAGGCGGATAAGAGGCGGCAGCATCGCATTCGTCAATAAATGCCGGATGCGGTTGATGATTTATAGGCCGAAAAAGAAGTGTTT‑TACTTACTCaa                                                                <  2:347393/146‑1 (MQ=255)                                                                                        gCATAACTGCCGGATGCGCTGAGCTTATCTGGTCTACGGTGCATGGCTTGTAGGGCGGATAAGATGCGCCAGCATCGCATCCGCCAATAAATGCCGGATGCGGTTGATGATTTATAGGCCGAAAAAGAAGTGTTT‑TACTTACTCAAATc                                                             >  1:589642/1‑149 (MQ=255)                                                                                          aTAACTGCCGGATGCGCTGAGCTTATCTGGTCTACGGTGCATGGCTTGTAGGGCGGATAAGATGCGCCAGCATCGCATCCGCCAATAAATGCCGGATGCGGTTGATGATTTATAGGCCGAAAAAGAAGTGTTT‑TACTTACTCAAATCCa                                                           >  1:398584/1‑149 (MQ=255)                                                                                           tcaCTGCCGGATGCGCTGAGCTTATCTGGTCTACGGTGCATGGCTTGTAGGGCGGATAAGATGCGCCAGCATCGGATCCGCCAATAAATGCCGGATGCGGTTGATGATTTATAGGCCGAAAAAGAAGTGTTT‑TACTTACTCAAATCCAc                                                          <  1:440745/147‑1 (MQ=255)                                                                                            aaCTGCCGGATGCGCTGAGCTTATCTGGTCTACGGTGCATGGCTTGTAGGGCGGATAAGATGCGCCAGCATCGCATCCGCCAATAAATGCCGGATGCGGTTGATGATTTATAGGCCGAAAAAGAAGTGTTT‑TACTTACTCAAATCCAcc                                                         >  1:736197/1‑149 (MQ=255)                                                                                             ccTGCCGGATGGGTTGAGCTTGTGTGGTCGACGGTGCTAGGCGTGTAGTGCACATAGGACGTGCAAGCAACGGATGCGGCAATGATTCCGTTATACTTTTGATGATTTATTGGGCGAAAAAGAAGTGTTT‑TACTTACTCAAATCCACCt                                                        <  2:476368/148‑1 (MQ=255)                                                                                               tGCCGGATGCGCTGAGCTTATCTGGTCTACGGTGCATGGCTTGTAGGGCGGATAAGATGCGCCAGCATCGCATCCGCCAATAAATGCCGGATGCGGTTGATGATTTATAGGCCGAAAAAGAAGTGTTT‑TACTTACTCAAATCCACCTGa                                                      <  2:589642/149‑1 (MQ=255)                                                                                                gCCGGATGCGCTGAGCTTATCTGGTCTACGGTGCATGGCTTGTAGGGCGGATAAGATGCGCCAGCATCGCATCCGCCAATAAATGCCGGATGCGGTTGATGATTTATAGGCCGAAAAAGAAGTGTTT‑TACTTACTCAAATCCACCTGAt                                                     >  1:886125/1‑149 (MQ=255)                                                                                                   ggATGCGCTGAGCTTATCTGGTCTACGGTGCATGGCTTGTAGGGCGGATAAGATGCGCCAGCATCGCATCCGCCAATAAATGCCGGATGCGGTTGATGATTTATAGGCCGAAAAAGAAGTGTTT‑TACTTACTCTAATCCATCTGATaaa                                                  >  1:186718/1‑149 (MQ=255)                                                                                                   ggATGCGCTGAGCTTATCTGGTCTACGGTGCATGGCTTGTAGGGCGGATAAGATGCGCCAGCATCGCATCCGCCAATAAATGCCGGATGCGGTTGATGATTTATAGGCCGAAAAAGAAGTGTTT‑TACTTACTCAAATCCACCTGATaaa                                                  >  1:48097/1‑149 (MQ=255)                                                                                                    gATGCGCGGAGCTTAGCTGGTCTACGGTGCATGGCTTGTAGGGCGAATAAGATGCGCCAGCATCGCATCCGCCAATAAATGCCGGATGCGGTTGATGATTTATAGGCCGAAAAAGAAGTGTTT‑TACTTACTCAAATCTACCTGATAAAt                                                 <  2:729297/149‑1 (MQ=255)                                                                                                     aTGCGCTGAGCTTATCTGGTCTACGGTGCATGGCTTGTAGGGCGGATAAGATGCGCCAGCATCGCATCCGCCAATAAATGCCGGATGCGGTTGATGATTTATAGGCCGAAAAAGAAGTGTTT‑TACTTACTCAAATCCACCTGATAAATc                                                <  2:48097/149‑1 (MQ=255)                                                                                                      tGCGCTGAGCTTATCTGGTCTACGGTGCATGGCTTGTAGGGCGGATAAGATGCGCCAGCATCGCATCCGCCAATAAATGCCGGATGCGGTTGATGATTTATAGGCCGAAAAAGAAGTGTTT‑TACTTACTCAAATCCACCTGATAAATCg                                               <  1:167616/149‑1 (MQ=255)                                                                                                      tGCGCTGAGCTTATCTGGTCTACGGTGCAGGGCTTGTAGGGCGGATAAGATGCGCCAGCATCGCATCCGCCAATAAATGCCGGATGCGGTTGATGATTTATAGGCCGAAAAAGAAGTGTTT‑TACTTACTCAAATCCACCTGATAAATCg                                               <  1:639155/149‑1 (MQ=255)                                                                                                         gcTGAGCTTATCTGGTCTACGGTGCATGGCTTGTAGGGCGGATAAGATGCGCCAGCATCGCATCCGCCAATAAATGCCGGATGCGGTTGATGATTTATAGGCCGAAAAAGAAGTGTTT‑TACTTACTCAAATCCACCTGATAAATTGCaa                                            >  2:493177/1‑149 (MQ=255)                                                                                                           tGAGCTTATCTGGTCTACGGTGCATGGCTTGTAGGGCGGATAAGATGCGCCAGCATCGCATCCGCCAATAAATGCCGGATGCGGTTGATGAtt                                                                                                   <  1:709479/93‑1 (MQ=255)                                                                                                           tGAGCTTATCTGGTCTACGGTGCATGGCTTGTAGGGCGGATAAGATGCGCCAGCATCGCATCCGCCAATAAATGCCGGATGCGGTTGATGAtt                                                                                                   >  2:709479/1‑93 (MQ=255)                                                                                                           tGAGCTTATCTGGTCTACGGTGCATGGCTTGTAGGGCGGATAAGATGCGCCAGCATCGCATCCGCCAATAAATGCCGGATGCGGTTGATGATTTATAGGCCGAAAAAGAAGTGTTT‑TACTTACTCAAATCCACCTGTTAAATCGCAAAc                                          >  1:169980/1‑149 (MQ=255)                                                                                                               cTTATCTGGTCTACGGTGCATGGCTTGTAGGGCGGATAAGATGCGCGAGCATCGCATCCGCCAATAAATGCCGGATGCGGTTGATGATTTATAGGCCGAAAAAGAAGTGTTT‑TACTTACTCAAATCCACCTGATAAATCGCAAACCCGa                                      <  2:830308/149‑1 (MQ=255)                                                                                                               cTTATCTGGTCTACGGTGCATGGCTTGTAGGGCGGATAAGATGCGCCAGCATCGCATCCGCCCATAAATGCCGGATGCGGTTGATGATTTATAGGCCGAAAAGGAAGTGTTT‑TACTTACTCAACTCCACCTGATAACTCGCAAACCCGa                                      >  2:221077/1‑149 (MQ=255)                                                                                                               cTTATCTGGTCTACGGTGCATGGCTTGTAGGGCGGATAAGATGCGCCAGCATCGCATCCGCCAATAAATGCCGGATGCGGTTGATGATTTATAGGCCGAAAAAGAAGTGTTT‑TACTTACTCAAATCCACCTGATAAATCGCAAACCCGa                                      >  1:252085/1‑149 (MQ=255)                                                                                                               cTTATCTGGTCTACGGTGCATGGCTTGTAGGGCGGATAAGATGCGCCAGCATCGCATCCGCCAATAAATGCCGGATGCGGTTGATGATTTATAGGCCGAAAAAGAAGTGTTT‑TACTTACTCAAATCCACCTGATAAATCGCAAACCCGa                                      <  2:431054/149‑1 (MQ=255)                                                                                                                ttATCTGGTCTACGGTGCATGGCTTGTAGGGCGGATAAGATGCGCCAGCATCGCATCCGCCAATAAATGCCGGATGCGGt                                                                                                           >  2:236764/1‑80 (MQ=255)                                                                                                                ttATCTGGTCTACGGTGCATGGCTTGTAGGGCGGATAAGATGCGCCAGCATCGCATCCGCCAATAAATGCCGGATGCGGt                                                                                                           <  1:236764/80‑1 (MQ=255)                                                                                                                ttATCTGGTCTACGGTGCATGGCTTGTAGGGCGGATAAGATGCGCCAGCATCGCATCCGCCAATAAATGCCGGATGCGGTTGATGATTTATAGGCCGAAAAAGAAGTGTTT‑TACTTACTCAAATCCACCTGATAAAt                                                 <  2:595276/137‑1 (MQ=255)                                                                                                                ttATCTGGTCTACGGTGCATGGCTTGTAGGGCGGATAAGATGCGCCAGCATCGCATCCGCCAATAAATGCCGGATGCGGTTGATGATTTATAGGCCGAAAAAGAAGTGTTT‑TACTTACTCAAATCCACCTGATAAAt                                                 >  1:595276/1‑137 (MQ=255)                                                                                                                   tCTGGTCTACGGTGCATGGCTTGTAGGGCGGATAAGATGCGCCAGCATCGCATCCGCCAATAAATGCCGGATGCGGTTGATGATTTATAGGCCGAAAAAGAAGTGTTT‑TACTTACTCAAATCCACCTGATAAATCGCAAACCCGATatc                                  >  1:937512/1‑149 (MQ=255)                                                                                                                   tCTGGTCTACGGTGCATGGCTTGTAGGGCGGATAAGATGCGCCAGCATCGCATCCGCCAATAAATGCCGGATGCGGTTGATGATTTATAGGCCGAAAAAGAAGTGTTT‑TACTTACTCAAATCCACCTGATAAATCGCAAACCCGATatc                                  >  2:42058/1‑149 (MQ=255)                                                                                                                    cTGGTCTACGGTGCATGGCTTGTAGGGCGGATAAGATGCGCCAGCATCGCATCCGCCAATAAATGCCGGATGCGGTTGATGATTTATAGGCCGAAAAAGAAGTGTTT‑TACTTACTCAAATCCACCTGATAAATCGCAAACCCGATatca                                 >  1:214165/1‑149 (MQ=255)                                                                                                                     tGGTCTACGGTGCATGGCTTGTAGGGCGGATAAGATGCGCCAGCATCGCATCCGCCAATAAATGCCGGATGCGGTTGATGATTTATAGGCCGAAAAAGAAGTGTTT‑TACTTACTCAAAt                                                              >  1:530742/1‑119 (MQ=255)                                                                                                                     tGGTCTACGGTGCATGGCTTGTAGGGCGGATAAGATGCGCCAGCATCGCATCCGCCAATAAATGCCGGATGCGGTTGATGATTTATAGGCCGAAAAAGAAGTGTTT‑TACTTACTCAAAt                                                              <  2:530742/119‑1 (MQ=255)                                                                                                                      gtgttagggTGCATGGCTTGCAGGGCGGATAAGATGCGCCAGAATCGCATCCGCCAATAAATGCCGGATGCGGTTGATGATTGATAGGCCGAAAAAGAAGTGTTT‑TACTTACTCAAATCCACCTGATAAATCGCAAACCCGATatcatc                               <  2:824662/142‑1 (MQ=255)                                                                                                                       gTCTACGGTGCATGGCTTGTAGGGCGGATAAGATGCGCCAGCATCGCATCCGCCAATAAATGCCGGATGCGGTTGATGATTTATAGGCCGAAAAAGCAGTGTTT‑TACTTACTCAAATCCACCTGGTAAATCGCAAACCCGATGTCACCg                              >  1:279100/1‑149 (MQ=255)                                                                                                                       gTCTACGGGGCATGGCTAGTTTGCCGGATAAGATGGGCCAGCATCGCATCCGCCAATAAATGCCGGATGCGGTTGATGATTTATAGGCCGAAAAAGAAGTGTTT‑TACTTACTCAAATCCACCTGATAAATCGCAAACCCGATATCATCg                              <  2:640313/149‑1 (MQ=255)                                                                                                                        tCTACGGTGCATGGCTTGTAGGGCGGATAAGATGCGCCAGCATCGCATCCGCCAATAAATGCCGGATGCGGTTGATGATTTATAGGCCGAAAAAGAAGTGTTT‑TACTTACTCAAATCCACCTGATAAATCGCAAACCCGATATCATCgg                             >  1:931898/1‑149 (MQ=255)                                                                                                                          tACGGTGCATGGCTTGTAGGGCGGATAAGATGCGCCAGCATCGCATCCGCCAATAAATGCCGGATGCGGTTGATGATTTATAGGCCGAAAAAGAAGTGTTT‑TACTTACTCAAATCCACCTGATAAATCGCAAACCCGATATCATCGGTc                           >  2:598266/1‑149 (MQ=255)                                                                                                                           aCGGTGTATGGCTTGTAGGGCGGATAAGATGCGCCAGCATCGTATCCGCCAATAAATGCCGGATGCGGTTGATGATTTATAGGCCGAAAAAGAAGTGTTT‑TACTTACTCAAATCCACCTGATAAATCGCAAACCCGATATCATCGGTcg                          <  1:564122/149‑1 (MQ=255)                                                                                                                              gTGCATGGCTTGTAGGGCGGATAAGATGCGCCAGCATCGCATCCGCCAATAAGTGCCGGATGCGGTTGATGATTTATAGGCCGAAAAAGAAGTGTTT‑TACTTAATCAAATCCACCTGATAAATCGCAAACCCAATATCATCTGTCGCGa                       >  2:910196/1‑149 (MQ=255)                                                                                                                              gTGCATGGCTTGTAGGGCGGATAAGATGCGCCAGCATCGCATCCGCCAATAAATGCCGGATGCGGTTGATGATTTATAGGCCGAAAAAGAAGTGTTT‑TACTTACTCAAATCCAc                                                          >  2:696590/1‑114 (MQ=255)                                                                                                                              gTGCATGGCTTGTAGGGCGGATAAGATGCGCCAGCATCGCATCCGCCAATAAATGCCGGATGCGGTTGATGATTTATAGGCCGAAAAAGAAGTGTTT‑TACTTACTCAAATCCAc                                                          >  2:211394/1‑114 (MQ=255)                                                                                                                              gTGCATGGCTTGTAGGGCGGATAAGATGCGCCAGCATCGCATCCGCCAATAAATGCCGGATGCGGTTGATGATTTATAGGCCGAAAAAGAAGTGTTT‑TACTTACTCAAATCCAc                                                          <  1:696590/114‑1 (MQ=255)                                                                                                                              gTGCATGGCTTGTAGGGCGGATAAGATGCGCCAGCATCGCATCCGCCAATAAATGCCGGATGCGGTTGATGATTTATAGGCCGAAAAAGAAGTGTTT‑TACTTACTCAAATCCAc                                                          <  1:211394/114‑1 (MQ=255)                                                                                                                               tGCATGGCTTGTAGGGCGGATAAGATGCGCCCGCATCGATTGAGACCCTCGAAGTCTTTGACGGTAGAGGATTTATAGGACGCACAAGAA‑TGTTTGTACTTACTCAAATCCACCTGATAAATCGCAAACCCGATATCATCGGTCGCGAc                      <  2:931898/149‑1 (MQ=255)                                                                                                                               tGCATGGCTTGTAGGGCGGATAAGATGCGCCAGCATCGCATCCGCCAATAAATGCCGGATGCGGTTGATGATTTATAGGCCGAAAAAGAAGTGTTT‑TACTTACTCAAATCCACCTGGTAAATCGCAAACCCGATATCATCGGTCGCGAc                      >  1:398601/1‑149 (MQ=255)                                                                                                                                gCATGGCTTGTAGGGCGGATAAGATGCGCCAGCATCGCATCCGCATCTTCAAAAGATATTCCGCTGCTGATTTATAGGCCGAAAAAGAAGTGTTT‑TACTTACTCAAATCCACCTGATAAATCGCAAACCCGATATCATCGGTCGCGACt                     <  1:910196/149‑1 (MQ=255)                                                                                                                                 cATGGCTTGTAGGGCGGATAAGATGCGCCAGCATCGCATCCGCCAATAAATGCCGGATGCGGTTGATGATTTATAGGCCGAAAAAGAAGTGTTT‑TACTTACTCAAATCCACCTGATAAATCGCAAACCCGATATCATCGGTCGCGACtt                    >  2:631264/1‑149 (MQ=255)                                                                                                                                     gCTTGTAGGGCGGATAAGATGCGCCAGCATCGCATCCGCCAATAAATGCCGGATGCGGTTGATGATTTATAGGCCGAAAAAGAAGTGTTT‑TACTTACTCAAATCCACCTGATAAATCGCAAACCCGATATCATCGGTCGCGACTTTAtt                <  2:252085/149‑1 (MQ=255)                                                                                                                                          tAGGGCGGATAAGATGCGCCAGCATCGCATCCGCCAATAAATGCCGGATGCGGTTGATGATTTATAGGCCGAAAAAGAAGTGTTT‑TACTTACTCAAATCCACCTGATAAATCGCAAACCCGATATCATCGGTCGCGACTTTATTCATCg           <  1:896630/149‑1 (MQ=255)                                                                                                                                             ggCGGATAAGATGCGCCAGCATCGCATCCGCCAATAAATGCCGGATGCGGTTGATGATTTATATGCCGAAAAAGAAGTGTTt‑tactt                                                                      <  1:167891/87‑1 (MQ=255)                                                                                                                                             ggCGGATAAGATGCGCCAGCATCGCATCCGCCAATAAATGCCGGATGCGGTTGATGATTTATATGCCGAAAAAGAAGTGTTt‑tactt                                                                      >  2:167891/1‑87 (MQ=255)                                                                                                                                             ggCGGATAAGATGCGCCAGCATCGCATCCGCCAATAAATGCCGGATGCGGTTGATGATTTATAGGCCGAAAAAGAAGTGTTT‑TACTTACTCAAATCCACCTGATAAATCGCAAACCCGATATCCTCGGTCGCGACTTTATTCATCGGAt        >  2:954751/1‑149 (MQ=255)                                                                                                                                              gCGGATAAGATGCGCCAGCATCGCATCCGCCAATAAATGCCGGATGCGGTTGATGATTTATAGGCCGAAAAAGAAGTGTTT‑TACTTACTCAAATCCACCTGATAAATCGCAAACCCGATATCATCGGTCGCGACTTTATTCATCGGATa       >  1:110100/1‑149 (MQ=255)                                                                                                                                               gggATAAGTTGCGCAAGCATCGCAGCCGCCAATAAATGCCGGATGCGGTTGATGATTTATAGGCCGAAAAAGAAGTGTTT‑TACTTACTCAAATCCACCTGATAAATCGCAAACCCGATATCATCGGTCGCGACTTTATTCATCGGATAc      <  1:297173/148‑1 (MQ=255)                                                                                                                                               cGGATAAGATGCGCCAGCATCGCATCCGCCAATAAATGCCGGATGCGGTTGATGATTTATAGGCCGAAAAAGAAGTGTTT‑TACTTACTCAAATCCACCTGATAAATCGCAAACCCGATATCATCGGTCGCGACTTTATTCATCGGATAc      >  2:177552/1‑149 (MQ=255)                                                                                                                                                 gATAAGATGCGCCAGCATCGCATCCGCCAATAAATGCCGGATGCGGTTGATGATTTATAGGCCGAAAAAGAAGTGTTT‑TACTTACTCAAATCCACCTGATAAATCGCAAACCCGATATCATCGGTCGCGACTTTATTCATCGGATACTg    >  1:297890/1‑149 (MQ=255)                                                                                                                                                   tAAGTTGCGCCAGCATCGCATCCGCCAATAAATGCCGGATGCGGTTGATGATTTATAGGCCGAAAAAGAAGTGTTT‑TACTTACTCAAATCCACCTGATAAATCGCAAACCCGATATCATCGGTCGCGACTTTATTCATCGGATACTGcc  <  1:628932/149‑1 (MQ=255)                                                                                                                                                   |                                                                                                                                                      GAGCAGGTGAGCGAAAAGGTTGCTGCACTGGCGGACTGGATTGAGTTGAATTTGCCCGAGGTGTTGGCGGTGCGGGATGAACGTGCGGCATAACTGCCGGATGCGCTGAGCTTATCTGGTCTACGGTGCATGGCTTGTAGGGCGGATAAGATGCGCCAGCATCGCATCCGCCAATAAATGCCGGATGCGGTTGATGATTTATAGGCCGAAAAAGAAGTGTTT‑TACTTACTCAAATCCACCTGATAAATCGCAAACCCGATATCATCGGTCGCGACTTTATTCATCGGATACTGCC  >  NC_000913_3_pae_pgi/4433661‑4433955

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.