New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913_3_pae_pgi	1343551 =	48 (1.190)	4 (0.110)	4/256	5.1	8.3%	intergenic (‑223/+46)	osmB/yciT	osmotically and stress inducible lipoprotein/global regulator of transcription; DeoR family
	?	NC_000913_3_pae_pgi	1343581 =	44 (1.200)					intergenic (‑253/+16)	osmB/yciT	osmotically and stress inducible lipoprotein/global regulator of transcription; DeoR family
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

TTCCGTGAAATCTGCTCGCGCGCAGGGTTATATCACGCAGGTGATAATGACTTCCTGTTATATCGCTGATAATAATTTTATATCTTGAGAGTGTTAATAACAGGTAAATAGTCTTAATTATCAACCAGGAATCATCTTAGAGCGGATGATTTGCCAAACTGCAAATCATCCGTAGAGAAGGGAAATGGTTAAATGTCAACGACGTGAATGGTGAGTTTACTGTGCTCAAGATGCATCAGATCGCTGGCGCGTATTTTCGAATCGGTAATCACGCGATTGAATCGCTCAACG  >  NC_000913_3_pae_pgi/1343409‑1343699                                                                                                                                               |                                                                                                                                                     ttCCGTGAAATCTGCTCGCGCGCAGGGTTATATCACGCAGGTGATAATGACTTCCTGTTATATCGCTGATAATAATTTTATATCTTGAGAGTGTTAATAACAGGTAAATAGTCTTAATTATCAACCAGGAATCATCTTAGAGCGgatga                                                                                                                                                <  1:371473/149‑1 (MQ=255)       gAAATCTGCTCGCGCGCAGGGTTATATCACGCAGGTGATAATGACTTCCTGTTATATCGCTGATAATAATTTTATATCTTGAGAGTGTTAATAACAGGTAAATAGTCTTAATTATCAACCAGGAATCATCTTAGAGCGGATGAGTTGcc                                                                                                                                          >  2:118316/1‑149 (MQ=255)         aaTCTGCTCGCGCGCAGGGTTATATCACGCAGGTGATAATGACTTCCTGTTATATCGCTGATAATAATTTTATATCTTGAGAGTGTTAATAACAGGTAAATAGTCTTAATTATCAACCAGGAATCATCTTAGAGCGGATGATTTGCCaa                                                                                                                                        >  1:617556/1‑149 (MQ=255)             tGCTGGCGCGCAGGGTTATATCACGGAGGTGATAATGTGTTGCTGTTATATCGCTGATAGTCGTTTTATATCTTGAGAGTGTTAATTGAAGGTAAATAGTCTTAATTTTCAACCTGGATTCTTCTTAGTATGGGTGATTTGTCaagatg                                                                                                                                    >  2:318540/1‑145 (MQ=255)               cTCGCGCGCAGGGTTATATCACGCAGGTGATAATGACTTCCTGTTATATCGCTGATAATAATTTTATATCTTGAGAGTGTTAATAACAGGTAAATAGTCTTAATTATCAACCAGGAATCATCTTAGAGCGgatgat                                                                                                                                               <  1:166301/136‑1 (MQ=255)               cTCGCGCGCAGGGTTATATCACGCAGGTGATAATGACTTCCTGTTATATCGCTGATAATAATTTTATATCTTGAGAGTGTTAATAACAGGTAAATAGTCTTAATTATCAACCAGGAATCATCTTAGAGCGgatgat                                                                                                                                               >  2:166301/1‑136 (MQ=255)                        aGGGTTATATCACGCAGGGGATAATGACTTCCTGTTATATCGCTGATAATAATTTTATACCCTCAGAGTCTTAATAACAGATAAATAATATTAATTATCAACCAGCGATCATCTTAGAGCGGATGATTTGCCACACTGCAAATCACCCg                                                                                                                         >  2:654197/1‑149 (MQ=255)                            ttATATCACGCAGGTGATAATGACTTCCTGTTATATCGCTGATAATAATTTTATATCTTGAGAGTGTTAATAACAGGTAAATAGTCTTAATTATCAACCAGGAATCATCTTAGAGCGGATGATTTGCCAAACTGCAAATCATCCGTaga                                                                                                                     <  1:119184/149‑1 (MQ=255)                                       aGGTGATAATGACTTCCTGTTATATCGCTGATAATAATTTTATATCTTGAGAGTGTTAATAACAGGTAAATAGTCTTAATTATCAACCAGGAATCATCTTAGAGCGGATGATTTGCCAAACTGCAAatcatc                                                                                                                           >  1:474952/1‑132 (MQ=255)                                       aGGTGATAATGACTTCCTGTTATATCGCTGATAATAATTTTATATCTTGAGAGTGTTAATAACAGGTAAATAGTCTTAATTATCAACCAGGAATCATCTTAGAGCGGATGATTTGCCAAACTGCAAatcatc                                                                                                                           <  2:474952/132‑1 (MQ=255)                                       aGGTGATAATAACATCCTGCTATAACGCAGACAATAAATTTAGACCACGACGGTGTTAATAACCGGTCGGGGGTTTTAACAGTCTTTTACCATTCATCTTAGAGCGGATGATTTGCCAAACTGCAAATCATCCGTAGAGAAGGGAAATg                                                                                                          <  1:530626/149‑1 (MQ=255)                                         gTGATAATAACTCCCTGTTATATCGCTGATAATAATTTTATATCTTGAGAGTGTTAATAACAGGTAAATAGTCTTAATTATCAACCAGGAATCATCTTAGAGCGGATGATTTGCCAAACTGCAAATCAGCCGTAGAGAAGGGAAATGGt                                                                                                        <  2:554171/149‑1 (MQ=255)                                                 gACTTCCTGTTATATCGCTGATAATAATTTTATATCTTGAGAGTGTTAATAACAGGTAAATAGTCTTAATTATCAACCAGGAATCATCTTAGAGCGGATGATTTGCCAAACTGCAAATCATCCGTAGAGAAGGGAAATGGTTAAATGTc                                                                                                >  1:478342/1‑149 (MQ=255)                                                          ttATATCGCTGATAATAATTTTATATCTTGAGAGTGTTAATAACAGGTAAATAGTCTTAATTATCAACCAGGAATCATCTTAGAGCGGATGATTTGCCAAACTGCAAATCATCCGTAGAGAAGGGAAATGGTTAAATGTAAAAGACGTg                                                                                       >  2:647257/1‑149 (MQ=255)                                                            atatCGCTGATAATAATTTTATATCTTGAGAGTGTGAATAACAGGTAAATAGTCTTAATTATCAACCAGGAATCATCTTAGAGCGGATGATTTGCCAAACTGCAAATCATCCGTAGAGAAGGGAAATGGTTAAATGTCAACGACGTGaa                                                                                     >  2:627965/1‑149 (MQ=255)                                                               tCGCTGATAATAATTTTATATCTTGAGAGTGTTAATAACAGGTAAATAGTCTTAATTATCAACCAGGAATCATCTTAGAGCGGATGATTTGCCAAACTGCAAATCATCCGTAGAGAAGGGAAATGGTTAAATGTCAACGACGTGAATgg                                                                                  >  2:5541/1‑149 (MQ=255)                                                                 gcggATAATAATTTTATATCTTGAGAGTGTTAATAACAGGTAAATAGTCTTAATTAACAACCAGGAATCATCTTAGATCGGATGATTTGCCAAACTGCAAATCATCCGTAGAGAAGGGAAATGGTTAAATGTCAACGACGTGAATGGTg                                                                                <  2:299925/146‑1 (MQ=255)                                                                  cTGATAATAATTTTATATCTTGAGAGTGTTAATAACAGGAAAATAGTCTTAATTATCAACCAGGAATCATCTTAGAGCGGAGGATTTGCCAAACTGCAAATCATCCGTAGAGAAGGGAAATGGGTAAATGACAACGACGTGAATGGTGa                                                                               >  2:108568/1‑149 (MQ=255)                                                                   tGATAATAATTTTATATCTTGAGAGTGTTAATAACAGGTAAATAGTCTTAATTATCAACCAGGAATCATCTTAGAGCGGATGATTTGCCAAACTGCAAATCATCCGTAGAGAAGGGAAATGGTTAAATGTCAACGACGTGAATGGTGAg                                                                              <  1:89809/149‑1 (MQ=255)                                                                    gATAATAATTTTATATCTTGAGAGTGTTAATAACAGGTAAATAGTCTTAATTATCAACCAGGAATCATCTTAGAGCGGATGATTTGCCAAACTGCAAATCATCCGTAGAGAAGGGAAATGGTTAAATGTCAACGACGTGAATGGTGAGt                                                                             >  1:156966/1‑149 (MQ=255)                                                                       agtaacTTTAGATCTTGAGAGTGTTAATAACAGGTAAATAGTCGTAATTATCAACCAGGAATCATCTTAGAGCGGATGATTTGCCAAACCGCAAATCATCCGTAGAGAAGGGAAATGGTTAAATGTCAACGACGTGAATGGTGAGTTTa                                                                          <  2:381495/147‑1 (MQ=255)                                                                         taatTTTATATCTTGAGAGTGTTAATAACAGGTAAATAGTCTTAATTATCAACCAGGAATCATCTTAGAGCGGATGATTTGCCAAACTGCAAATCATCCGTAGAGAAGGGAAATGGTTAAATGTCAACGACGTGAATGGTGAGTTTACt                                                                        <  1:180590/149‑1 (MQ=255)                                                                         taatTTTATATCTTGAGAGTGTTAATAACAGGGAAATAGTCTTAATTACCAACCAGGAATCATGTTAGAGCGGATGATTTGCCAAACTGCAAATCATCCGTAGAGAAGGGAAATGGTTAAATGTCAACGACGTGAGTGGGGTGTTTatt                                                                        >  1:631172/1‑147 (MQ=255)                                                                          aatTTTATATCTTGAGAGTGTTAATAACAGGTAAATAGTCTTAATTATCAACCAGGAATCATCTTAGAGCGGATGATTTGCCAAACTGCAAATCATCCGTAGAGAAGGGAAATGGTTAAATGTCAACGACGTGAATGGTGAGTTTACtg                                                                       >  2:314599/1‑149 (MQ=255)                                                                            ttttATATCTTGAGAGTGTTAATAACAGGTAAATAGTCTTAATTATCAACCAGGAATCATCTTAGAGCGGATGATTTGCCAAACTGCAAATCATCCGTAGAGAAGGGAAATg                                                                                                          <  2:667098/112‑1 (MQ=255)                                                                            ttttATATCTTGAGAGTGTTAATAACAGGTAAATAGTCTTAATTATCAACCAGGAATCATCTTAGAGCGGATGATTTGCCAAACTGCAAATCATCCGTAGAGAAGGGAAATg                                                                                                          >  1:667098/1‑112 (MQ=255)                                                                            ttttATATCTTGAGAGTGTTAATAACAGGTAAATAGTCTTAATTATCAACCAGGAATCATCTTAGAGCGGATGATTTGCCAAACTGCAAATCATCCGTAGAGAAGGGAAATg                                                                                                          >  1:666092/1‑112 (MQ=255)                                                                            ttttATATCTTGAGAGTGTTAATAACAGGTAAATAGTCTTAATTATCAACCAGGAATCATCTTAGAGCGGATGATTTGCCAAACTGCAAATCATCCGTAGAGAAGGGAAATg                                                                                                          <  2:666092/112‑1 (MQ=255)                                                                            ttttATATCTTGAGAGTGTTAATAACAGGTAAATAGTCTTAATTATCAACCAGGAATCATCTTAGAGCGGATGATTTGCCAAACTGCAAATCATCCGTAGAGAAGGGAAATGGTTAAATGTCAACGACGTGAATGGTGAGTTTACtgtg                                                                     >  1:177494/1‑149 (MQ=255)                                                                                      tGAGAGTGTTAATAACAGGTAAATAGTCTTAATTATCAACCAGGAATCATCTTAGAGCGGATGATTTGCCAAACTGCAAATCATCCGTAGAGAAGGGAAATGGTTAAATGTCAACGACGTGAATGGTGAGTTTACTGTGCTCAAGATGc                                                           <  1:614530/149‑1 (MQ=255)                                                                                        agagTGTTAATAACAGGTAAATAGTCTTAATTATCAACCAGGAATCATCTTAGAGCGGATGATTTGCCAAACTGCAAATCATCCGTAGAGAAGGGAAATGGTTAAATGTCAACGACGTGAATGGTGAGTTTACTGTGCTCAAGATGCAt                                                         <  2:478342/149‑1 (MQ=255)                                                                                            tgtTAATAACAGGTAAATAGTCTTAATTATCAACCAGGAATCATCTTAGAGCGGATGATTTGCCAAACTGCAAATCATCCGTAGAGAAGGGAAATGGTTAAATGTCAACGACGTGAATGGTGAGTTTACTGTGCTCAAGATGCATCAGa                                                     >  1:507261/1‑149 (MQ=255)                                                                                              gtaacaaGAGGTAAATAGTCTTAATTATCAACCAGGAATCATCTTAGAGCGGATAATTTGCCAAACTGCAAATCATCCGTAGAGAAGGGAAATGGTTAAATGTCAACGACGTGAATGGTGAGTTTACTGTGCTCAAGATGCATCAGATc                                                   <  2:359886/148‑1 (MQ=255)                                                                                                aataaCAGGTAAATAGTCTTAATTATCAACCAGGAATCATCTTAGAGCGGATGATTTGCCAAACTGCAAATCATCCGTAGAGAAGGGAAATGGTTAAATGTCAACGACGTGAATGGTGAGTTTACTGTGCTCAAGATGCATCAGATCGc                                                 <  2:619356/149‑1 (MQ=255)                                                                                                      aGGTAAATAGTCTTAATTATCAACCAGGAATCATCTTAGAGCGGATGATTTGCCAAACTGCAAATCATCCGTAGAGAAGGGAAATGGTTAAATGTCAACGACGTGAATGGTGAGTTTACTGTGCTCAAGATGCATCAGATCGCTGgcgc                                           >  2:18772/1‑149 (MQ=255)                                                                                                             tAGTCTTAATTATCAACCAGGAATCATCTTAGAGCGGATGATTTGCCAAACTGCAAATCATCCGTAGAGAAGGGAAATGGTTAAATGTCAACGACGTGAATGGTGAGTTTACTGTGCTCAAGATGCATCAGATCGCTGGCGCGTAtttt                                    <  2:646767/149‑1 (MQ=255)                                                                                                                        attaaCGAGGAATCATCTTAGAGCGGATGATTTGCCAAACTGCAAATCAGCCGTAGAGAAGGGAAATGGTTAAATGGCAACGACGTGAATGGTGAGTTTACTGTGCTCAAGATGCAGCACGTCGCTGGCGCGTATTTTCGAATCGGTaa                         <  2:156966/146‑1 (MQ=255)                                                                                                                             ccAGGAATCATCTTAGAGCGGATGATTTGCCAAACTGCAAATCATCCGTAGAGAAGGGAAATGGTTAAATGTCAACGACGTGAATGGTGAGTTTACTGTGCTCAAGATGCATCAGATCGCTGGCGCGTATTTTCGAATCGGTAATCAcg                    >  1:76578/1‑149 (MQ=255)                                                                                                                              cAGGAATCATCTTAGAGCGGATGATTTGCCAAACTGCAAATCATCCGTAGAGAAGGGAAATGGTTAAATGTCAACGACGTGAATGGTGAGTTTACTGTGCTCAAGATGCATCAGATCGCTGGCGCGTATTTTCGAATCGGTAATCAcgc                   >  2:350144/1‑149 (MQ=255)                                                                                                                               aGGAATCATCTTAGAGCGGATGATTTGCCAAACTGCAAATCATCCGTAGAGAAGGGAAATGGTTAAATGTCAACGACGTGAATGGTGAGTTTACTGTGCTCAAGATGCATCAGATCGCTGGCGGGTATTTTCGAATCTGTATTGAcgcg                  >  2:140171/1‑149 (MQ=255)                                                                                                                               aGGAATCATCTTAGAGCGGATGATTTGCCAAACTGCAAATCATCCGTAGAGAAGGGAAATGGTTAAATGTCAACGACGTGAATGGTGAGTTTACTGTGCTCAAGATGCATCAGATCGCTGGCGCGTATTTTCGAATCGGTAATCAcgcg                  >  2:171453/1‑149 (MQ=255)                                                                                                                                        cTTAGAGCGGATGATTTGCCAAACTGCAAATCATCCGTAGAGAAGGGAAATGGTTAAATGTCAACGACGTGAATGGTGAGTTTACTGTGCTCAAGATGCATCAGATCGCTGGCGCGTATTTTCGAATCGGTAATCACGCGATTGAATCg         <  1:701758/149‑1 (MQ=255)                                                                                                                                        cTTAAAGCCGATGATATGCCAAACTGCAAATCATCCGTAGAGAAGGGAAATGGTTAAATGTCAACGACGTGAATGGTGAGTTTACTGTGCTCAAGATGCATCAGATCGCTCGCGCGTATTTTCGAATCGGTAATCACGCGATTGAATCg         <  2:631172/149‑1 (MQ=255)                                                                                                                                         ttAGAGCGGATGATTTGCCAAACTGCAAATCATCCGTAGAGAAGGGAAATGGTTAAATGTCGACGACGTGAATGGTGAGTTTACTGTGCTCAAGATGCATCAGATCGCTGGCGCGTATTTTCGAATCGGTAATCACGCGATTGAATCGc        <  1:350144/149‑1 (MQ=255)                                                                                                                                         ttAGAGCGGATGATTTGCCAAACTGCAAATCATCCGTAGAGAAGGGAAATGGTTAAATGTCAACGACGTGAATGGTGAGTTTACTGTGCTCCAGACGCGTCATATCGCTGGCGCGTATTTTCGAATCGGTAATCACGCGATTGAATCGc        >  1:496998/1‑149 (MQ=255)                                                                                                                                          tAGAGCGGATGATTTGCCAAACTGCAAATCATCCGTAGAGAAGGGAAATGGTTAAATGTCAACGACGTGAATGGTGAGTTTACTGTGCTCAAGATGCATCAGATCGCTg                                               <  2:452523/109‑1 (MQ=255)                                                                                                                                          tAGAGCGGATGATTTGCCAAACTGCAAATCATCCGTAGAGAAGGGAAATGGTTAAATGTCAACGACGTGAATGGTGAGTTTACTGTGCTCAAGATGCATCAGATCGCTg                                               >  1:452523/1‑109 (MQ=255)                                                                                                                                             agCGGATGATTTGCCAAACTGCAAATCATCCGTAGAGAAGGGAAATGGTTAAATGTCAACGACGTGAATGGTGAGTTTACTGTGCTCAAGATGCATCAGATCGCTGGCGCGTATTTTCGAATCGGTAATCACGCGATTGAATCGCTCaa    <  1:651161/149‑1 (MQ=255)                                                                                                                                               cGGATGATTTGCCAAACTGCAAATCATCCGTAGAGAAGGGAAATGGTTAAATGTCAACGACGTGAATGGTGAGTTTACTGTGCTCAAGATGCATCAGATCGCTGGCGCGTATTTTCGAATCGGTAATCACGCGATTGAATCGCTCAACg  >  1:327847/1‑149 (MQ=255)                                                                                                                                               |                                                                                                                                                     TTCCGTGAAATCTGCTCGCGCGCAGGGTTATATCACGCAGGTGATAATGACTTCCTGTTATATCGCTGATAATAATTTTATATCTTGAGAGTGTTAATAACAGGTAAATAGTCTTAATTATCAACCAGGAATCATCTTAGAGCGGATGATTTGCCAAACTGCAAATCATCCGTAGAGAAGGGAAATGGTTAAATGTCAACGACGTGAATGGTGAGTTTACTGTGCTCAAGATGCATCAGATCGCTGGCGCGTATTTTCGAATCGGTAATCACGCGATTGAATCGCTCAACG  >  NC_000913_3_pae_pgi/1343409‑1343699

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.