New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913_3_pae_pgi	1343551 =	48 (1.190)	4 (0.110)	4/256	5.1	8.3%	intergenic (‑223/+46)	osmB/yciT	osmotically and stress inducible lipoprotein/global regulator of transcription; DeoR family
	?	NC_000913_3_pae_pgi	1343581 =	44 (1.200)					intergenic (‑253/+16)	osmB/yciT	osmotically and stress inducible lipoprotein/global regulator of transcription; DeoR family
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

TTATATCACGCAGGTGATAATGACTTCCTGTTATATCGCTGATAATAATTTTATATCTTGAGAGTGTTAATAACAGGTAAATAGTCTTAATTATCAACCAGGAATCATCTTAGAGCGGATGATTTGCCAAACTGCAAATCATCCGTAGAGAAGGGAAATGGTTAAATGTCAACGACGTGAATGGTGAGTTTACTGTGCTCAAGATGCATCAGATCGCTGGCGCGTATTTTCGAATCGGTAATCACGCGATTGAATCGCTCAACGGGACCGATGGAGTATGAATGTAC  >  NC_000913_3_pae_pgi/1343436‑1343722                                                                                                                                                  |                                                                                                                                              ttATATCACGCAGGTGATAATGACTTCCTGTTATATCGCTGATAATAATTTTATATCTTGAGAGTGTTAATAACAGGTAAATAGTCTTAATTATCAACCAGGAATCATCTTAGAGCGGATGATTTGCCAAACTGCAAATCATCCGTaga                                                                                                                                            <  1:119184/149‑1 (MQ=255)            aGGTGATAATAACATCCTGCTATAACGCAGACAATAAATTTAGACCACGACGGTGTTAATAACCGGTCGGGGGTTTTAACAGTCTTTTACCATTCATCTTAGAGCGGATGATTTGCCAAACTGCAAATCATCCGTAGAGAAGGGAAATg                                                                                                                                 <  1:530626/149‑1 (MQ=255)              gTGATAATAACTCCCTGTTATATCGCTGATAATAATTTTATATCTTGAGAGTGTTAATAACAGGTAAATAGTCTTAATTATCAACCAGGAATCATCTTAGAGCGGATGATTTGCCAAACTGCAAATCAGCCGTAGAGAAGGGAAATGGt                                                                                                                               <  2:554171/149‑1 (MQ=255)                      gACTTCCTGTTATATCGCTGATAATAATTTTATATCTTGAGAGTGTTAATAACAGGTAAATAGTCTTAATTATCAACCAGGAATCATCTTAGAGCGGATGATTTGCCAAACTGCAAATCATCCGTAGAGAAGGGAAATGGTTAAATGTc                                                                                                                       >  1:478342/1‑149 (MQ=255)                               ttATATCGCTGATAATAATTTTATATCTTGAGAGTGTTAATAACAGGTAAATAGTCTTAATTATCAACCAGGAATCATCTTAGAGCGGATGATTTGCCAAACTGCAAATCATCCGTAGAGAAGGGAAATGGTTAAATGTAAAAGACGTg                                                                                                              >  2:647257/1‑149 (MQ=255)                                 atatCGCTGATAATAATTTTATATCTTGAGAGTGTGAATAACAGGTAAATAGTCTTAATTATCAACCAGGAATCATCTTAGAGCGGATGATTTGCCAAACTGCAAATCATCCGTAGAGAAGGGAAATGGTTAAATGTCAACGACGTGaa                                                                                                            >  2:627965/1‑149 (MQ=255)                                    tCGCTGATAATAATTTTATATCTTGAGAGTGTTAATAACAGGTAAATAGTCTTAATTATCAACCAGGAATCATCTTAGAGCGGATGATTTGCCAAACTGCAAATCATCCGTAGAGAAGGGAAATGGTTAAATGTCAACGACGTGAATgg                                                                                                         >  2:5541/1‑149 (MQ=255)                                      gcggATAATAATTTTATATCTTGAGAGTGTTAATAACAGGTAAATAGTCTTAATTAACAACCAGGAATCATCTTAGATCGGATGATTTGCCAAACTGCAAATCATCCGTAGAGAAGGGAAATGGTTAAATGTCAACGACGTGAATGGTg                                                                                                       <  2:299925/146‑1 (MQ=255)                                       cTGATAATAATTTTATATCTTGAGAGTGTTAATAACAGGAAAATAGTCTTAATTATCAACCAGGAATCATCTTAGAGCGGAGGATTTGCCAAACTGCAAATCATCCGTAGAGAAGGGAAATGGGTAAATGACAACGACGTGAATGGTGa                                                                                                      >  2:108568/1‑149 (MQ=255)                                        tGATAATAATTTTATATCTTGAGAGTGTTAATAACAGGTAAATAGTCTTAATTATCAACCAGGAATCATCTTAGAGCGGATGATTTGCCAAACTGCAAATCATCCGTAGAGAAGGGAAATGGTTAAATGTCAACGACGTGAATGGTGAg                                                                                                     <  1:89809/149‑1 (MQ=255)                                         gATAATAATTTTATATCTTGAGAGTGTTAATAACAGGTAAATAGTCTTAATTATCAACCAGGAATCATCTTAGAGCGGATGATTTGCCAAACTGCAAATCATCCGTAGAGAAGGGAAATGGTTAAATGTCAACGACGTGAATGGTGAGt                                                                                                    >  1:156966/1‑149 (MQ=255)                                            agtaacTTTAGATCTTGAGAGTGTTAATAACAGGTAAATAGTCGTAATTATCAACCAGGAATCATCTTAGAGCGGATGATTTGCCAAACCGCAAATCATCCGTAGAGAAGGGAAATGGTTAAATGTCAACGACGTGAATGGTGAGTTTa                                                                                                 <  2:381495/147‑1 (MQ=255)                                              taatTTTATATCTTGAGAGTGTTAATAACAGGTAAATAGTCTTAATTATCAACCAGGAATCATCTTAGAGCGGATGATTTGCCAAACTGCAAATCATCCGTAGAGAAGGGAAATGGTTAAATGTCAACGACGTGAATGGTGAGTTTACt                                                                                               <  1:180590/149‑1 (MQ=255)                                              taatTTTATATCTTGAGAGTGTTAATAACAGGGAAATAGTCTTAATTACCAACCAGGAATCATGTTAGAGCGGATGATTTGCCAAACTGCAAATCATCCGTAGAGAAGGGAAATGGTTAAATGTCAACGACGTGAGTGGGGTGTTTatt                                                                                               >  1:631172/1‑147 (MQ=255)                                               aatTTTATATCTTGAGAGTGTTAATAACAGGTAAATAGTCTTAATTATCAACCAGGAATCATCTTAGAGCGGATGATTTGCCAAACTGCAAATCATCCGTAGAGAAGGGAAATGGTTAAATGTCAACGACGTGAATGGTGAGTTTACtg                                                                                              >  2:314599/1‑149 (MQ=255)                                                 ttttATATCTTGAGAGTGTTAATAACAGGTAAATAGTCTTAATTATCAACCAGGAATCATCTTAGAGCGGATGATTTGCCAAACTGCAAATCATCCGTAGAGAAGGGAAATg                                                                                                                                 <  2:667098/112‑1 (MQ=255)                                                 ttttATATCTTGAGAGTGTTAATAACAGGTAAATAGTCTTAATTATCAACCAGGAATCATCTTAGAGCGGATGATTTGCCAAACTGCAAATCATCCGTAGAGAAGGGAAATg                                                                                                                                 >  1:666092/1‑112 (MQ=255)                                                 ttttATATCTTGAGAGTGTTAATAACAGGTAAATAGTCTTAATTATCAACCAGGAATCATCTTAGAGCGGATGATTTGCCAAACTGCAAATCATCCGTAGAGAAGGGAAATg                                                                                                                                 >  1:667098/1‑112 (MQ=255)                                                 ttttATATCTTGAGAGTGTTAATAACAGGTAAATAGTCTTAATTATCAACCAGGAATCATCTTAGAGCGGATGATTTGCCAAACTGCAAATCATCCGTAGAGAAGGGAAATg                                                                                                                                 <  2:666092/112‑1 (MQ=255)                                                 ttttATATCTTGAGAGTGTTAATAACAGGTAAATAGTCTTAATTATCAACCAGGAATCATCTTAGAGCGGATGATTTGCCAAACTGCAAATCATCCGTAGAGAAGGGAAATGGTTAAATGTCAACGACGTGAATGGTGAGTTTACtgtg                                                                                            >  1:177494/1‑149 (MQ=255)                                                           tGAGAGTGTTAATAACAGGTAAATAGTCTTAATTATCAACCAGGAATCATCTTAGAGCGGATGATTTGCCAAACTGCAAATCATCCGTAGAGAAGGGAAATGGTTAAATGTCAACGACGTGAATGGTGAGTTTACTGTGCTCAAGATGc                                                                                  <  1:614530/149‑1 (MQ=255)                                                             agagTGTTAATAACAGGTAAATAGTCTTAATTATCAACCAGGAATCATCTTAGAGCGGATGATTTGCCAAACTGCAAATCATCCGTAGAGAAGGGAAATGGTTAAATGTCAACGACGTGAATGGTGAGTTTACTGTGCTCAAGATGCAt                                                                                <  2:478342/149‑1 (MQ=255)                                                                 tgtTAATAACAGGTAAATAGTCTTAATTATCAACCAGGAATCATCTTAGAGCGGATGATTTGCCAAACTGCAAATCATCCGTAGAGAAGGGAAATGGTTAAATGTCAACGACGTGAATGGTGAGTTTACTGTGCTCAAGATGCATCAGa                                                                            >  1:507261/1‑149 (MQ=255)                                                                   gtaacaaGAGGTAAATAGTCTTAATTATCAACCAGGAATCATCTTAGAGCGGATAATTTGCCAAACTGCAAATCATCCGTAGAGAAGGGAAATGGTTAAATGTCAACGACGTGAATGGTGAGTTTACTGTGCTCAAGATGCATCAGATc                                                                          <  2:359886/148‑1 (MQ=255)                                                                     aataaCAGGTAAATAGTCTTAATTATCAACCAGGAATCATCTTAGAGCGGATGATTTGCCAAACTGCAAATCATCCGTAGAGAAGGGAAATGGTTAAATGTCAACGACGTGAATGGTGAGTTTACTGTGCTCAAGATGCATCAGATCGc                                                                        <  2:619356/149‑1 (MQ=255)                                                                           aGGTAAATAGTCTTAATTATCAACCAGGAATCATCTTAGAGCGGATGATTTGCCAAACTGCAAATCATCCGTAGAGAAGGGAAATGGTTAAATGTCAACGACGTGAATGGTGAGTTTACTGTGCTCAAGATGCATCAGATCGCTGgcgc                                                                  >  2:18772/1‑149 (MQ=255)                                                                                  tAGTCTTAATTATCAACCAGGAATCATCTTAGAGCGGATGATTTGCCAAACTGCAAATCATCCGTAGAGAAGGGAAATGGTTAAATGTCAACGACGTGAATGGTGAGTTTACTGTGCTCAAGATGCATCAGATCGCTGGCGCGTAtttt                                                           <  2:646767/149‑1 (MQ=255)                                                                                             attaaCGAGGAATCATCTTAGAGCGGATGATTTGCCAAACTGCAAATCAGCCGTAGAGAAGGGAAATGGTTAAATGGCAACGACGTGAATGGTGAGTTTACTGTGCTCAAGATGCAGCACGTCGCTGGCGCGTATTTTCGAATCGGTaa                                                <  2:156966/146‑1 (MQ=255)                                                                                                  ccAGGAATCATCTTAGAGCGGATGATTTGCCAAACTGCAAATCATCCGTAGAGAAGGGAAATGGTTAAATGTCAACGACGTGAATGGTGAGTTTACTGTGCTCAAGATGCATCAGATCGCTGGCGCGTATTTTCGAATCGGTAATCAcg                                           >  1:76578/1‑149 (MQ=255)                                                                                                   cAGGAATCATCTTAGAGCGGATGATTTGCCAAACTGCAAATCATCCGTAGAGAAGGGAAATGGTTAAATGTCAACGACGTGAATGGTGAGTTTACTGTGCTCAAGATGCATCAGATCGCTGGCGCGTATTTTCGAATCGGTAATCAcgc                                          >  2:350144/1‑149 (MQ=255)                                                                                                    aGGAATCATCTTAGAGCGGATGATTTGCCAAACTGCAAATCATCCGTAGAGAAGGGAAATGGTTAAATGTCAACGACGTGAATGGTGAGTTTACTGTGCTCAAGATGCATCAGATCGCTGGCGGGTATTTTCGAATCTGTATTGAcgcg                                         >  2:140171/1‑149 (MQ=255)                                                                                                    aGGAATCATCTTAGAGCGGATGATTTGCCAAACTGCAAATCATCCGTAGAGAAGGGAAATGGTTAAATGTCAACGACGTGAATGGTGAGTTTACTGTGCTCAAGATGCATCAGATCGCTGGCGCGTATTTTCGAATCGGTAATCAcgcg                                         >  2:171453/1‑149 (MQ=255)                                                                                                             cTTAGAGCGGATGATTTGCCAAACTGCAAATCATCCGTAGAGAAGGGAAATGGTTAAATGTCAACGACGTGAATGGTGAGTTTACTGTGCTCAAGATGCATCAGATCGCTGGCGCGTATTTTCGAATCGGTAATCACGCGATTGAATCg                                <  1:701758/149‑1 (MQ=255)                                                                                                             cTTAAAGCCGATGATATGCCAAACTGCAAATCATCCGTAGAGAAGGGAAATGGTTAAATGTCAACGACGTGAATGGTGAGTTTACTGTGCTCAAGATGCATCAGATCGCTCGCGCGTATTTTCGAATCGGTAATCACGCGATTGAATCg                                <  2:631172/149‑1 (MQ=255)                                                                                                              ttAGAGCGGATGATTTGCCAAACTGCAAATCATCCGTAGAGAAGGGAAATGGTTAAATGTCGACGACGTGAATGGTGAGTTTACTGTGCTCAAGATGCATCAGATCGCTGGCGCGTATTTTCGAATCGGTAATCACGCGATTGAATCGc                               <  1:350144/149‑1 (MQ=255)                                                                                                              ttAGAGCGGATGATTTGCCAAACTGCAAATCATCCGTAGAGAAGGGAAATGGTTAAATGTCAACGACGTGAATGGTGAGTTTACTGTGCTCCAGACGCGTCATATCGCTGGCGCGTATTTTCGAATCGGTAATCACGCGATTGAATCGc                               >  1:496998/1‑149 (MQ=255)                                                                                                               tAGAGCGGATGATTTGCCAAACTGCAAATCATCCGTAGAGAAGGGAAATGGTTAAATGTCAACGACGTGAATGGTGAGTTTACTGTGCTCAAGATGCATCAGATCGCTg                                                                      <  2:452523/109‑1 (MQ=255)                                                                                                               tAGAGCGGATGATTTGCCAAACTGCAAATCATCCGTAGAGAAGGGAAATGGTTAAATGTCAACGACGTGAATGGTGAGTTTACTGTGCTCAAGATGCATCAGATCGCTg                                                                      >  1:452523/1‑109 (MQ=255)                                                                                                                  agCGGATGATTTGCCAAACTGCAAATCATCCGTAGAGAAGGGAAATGGTTAAATGTCAACGACGTGAATGGTGAGTTTACTGTGCTCAAGATGCATCAGATCGCTGGCGCGTATTTTCGAATCGGTAATCACGCGATTGAATCGCTCaa                           <  1:651161/149‑1 (MQ=255)                                                                                                                    cGGATGATTTGCCAAACTGCAAATCATCCGTAGAGAAGGGAAATGGTTAAATGTCAACGACGTGAATGGTGAGTTTACTGTGCTCAAGATGCATCAGATCGCTGGCGCGTATTTTCGAATCGGTAATCACGCGATTGAATCGCTCAACg                         >  1:327847/1‑149 (MQ=255)                                                                                                                      gatgatTTGCCAAACTGCAAATCATCCGTAGAGAAGGGAAATGGTTAAATGTCAACGACGt                                                                                                               <  2:578914/61‑1 (MQ=255)                                                                                                                      gatgatTTGCCAAACTGCAAATCATCCGTAGAGAAGGGAAATGGTTAAATGTCAACGACGt                                                                                                               >  1:578914/1‑61 (MQ=255)                                                                                                                               acAAACTGCAAATCATCCGTAGAGAAGGGAAATGGTTAAATGTCAACGACGTGAATGGTGAGTTTACTGTGCTCAAGATGCATCAGATCGCAGGCGCTTATTTTCGAATCGGTAATCACGCGATTGAATCGCTCAACGGGACCGATGGa              <  1:140171/148‑1 (MQ=255)                                                                                                                                 aaaCTGCAAATCATCCGTAGAGAAGGGAAATGGTTAAATGTCAACGACGTGAATGGTGAGTTTACTGTGCTCAAGATGCATCAGATCGCTGGCGCGTATTTTCGAATCGGTAATCACGCGATTGAATCGCTCAACGGGACCGATGGAGt            <  2:507261/149‑1 (MQ=255)                                                                                                                                      gCAAATCATCCGTAGAGAAGGGAAATGGTTAAATGTCAACGACGTGAATGGTGAGTTTACTGTGCTCAAGATGCATCAGATCGCTGGCGCGTATTTTCGAATCGGTAATCACGCGATTGAATCGCTCAACGGGACCGATGGAGTATGaa       <  1:118316/149‑1 (MQ=255)                                                                                                                                          atcatcCGTAGAGAAGGGAAATGGTTAAATGTCAACGACGTGAATGGTGAGTTTACTGTGCTCAAGATGCATCAGATCGCTGGCGCGTATTTTCGAATCGGTAATCACGCGATTGAATCGCTCAACGGGACCGATGGAGTATGAATGTa   >  1:101261/1‑149 (MQ=255)                                                                                                                                           tcatcCGTAGAGAAGGGAAATGGTTAAATGTCAACGACGTGAATGGTGAGTTTACTGTGCTCAAGATGCATCAGATCGCTGGCGCGTATTTTCGAATCGGTAATCACGCGAGTGAATCGCTCAACGGGACCGATGGAGTATGAATGTAc  >  1:106798/1‑149 (MQ=255)                                                                                                                                                  |                                                                                                                                              TTATATCACGCAGGTGATAATGACTTCCTGTTATATCGCTGATAATAATTTTATATCTTGAGAGTGTTAATAACAGGTAAATAGTCTTAATTATCAACCAGGAATCATCTTAGAGCGGATGATTTGCCAAACTGCAAATCATCCGTAGAGAAGGGAAATGGTTAAATGTCAACGACGTGAATGGTGAGTTTACTGTGCTCAAGATGCATCAGATCGCTGGCGCGTATTTTCGAATCGGTAATCACGCGATTGAATCGCTCAACGGGACCGATGGAGTATGAATGTAC  >  NC_000913_3_pae_pgi/1343436‑1343722

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.