| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913_3_pae_pgi | = 4331354 | NA (NA) | 6 (0.160) | 6/260 | 4.3 | 16.2% | intergenic (+90/‑22) | proP/pmrR | proline/glycine betaine transporter/putative membrane‑bound BasS regulator |
| ? | NC_000913_3_pae_pgi | = 4331362 | 31 (0.830) | intergenic (+98/‑14) | proP/pmrR | proline/glycine betaine transporter/putative membrane‑bound BasS regulator | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
GATTTGCAGGCGAAACGTACCCGCCTGGTGCAGCAACATCCGCGAATTGATGAATAAGCTGAAACGGATGGCCTGATGTGACGCTGTCTTATCAGGCCAATTGAACTCTTAAGGTTCACTTAATCTCTGACGCGCATACTCTCCTCCAGGTTAAC‑‑GGAGGAGAGTGCAATGAAAAACCGTGTTTATGAAAGTTTAACTACCGTGTTCAGCGTGCTGGTGGTCAGCAGCTTTCTTTATATCTGGTTTGCCACGTACTGATCTTTCTTCAGCCGTACCCAGGCCCGCGTGCC > NC_000913_3_pae_pgi/4331208‑4331497 | gATTTGCAGGCGAAACGTACCCGCCTGGTGCAGCAACATCCGCGAATTGATGAATAAGCTGAAACGGATGGCCTGATGTGACGCTGTCTTATCAGGCCAATTGAACTCTTAAGGTTCACTTAATCTCTGACGCGCATACTCTCCTCCAg > 1:125324/1‑149 (MQ=255)gATTTGCAGGCGAAACGTACCCGCCTGGTGCAGCAACATCCGCGAATTGATGAATAAGCTGAAACGGATGGCCTGATGTGACGCTGTCTTATCAGGCCAATTGAACTCTTAAGGTTCACTTAATCTCTGACGCGCATACTCTCCTCCAg < 2:372453/149‑1 (MQ=255) gAAACGTACCCGCCTGGTGCAGCAACATCCGCGAATTGATGAATAAGCTGAAACGGATGGCCTGATGTGACGCTGTCTTATCAGGCCAATTGAACTCTTAAGGTTCACTTAATCTCTGACGCGCATACTCTCCTCCAGGTTAAC‑‑ggagg > 2:498655/1‑149 (MQ=255) aaaCGTACCCGCCTGGTGCAGCAACATCCGCGAATTGATGAATAAGCTGAAACGGATGGCCTGATGTGACGCTGTCTTATCAGGCCAATTGAACTCTTAAGGTTCACTTAATCTCTGACGCGCATACTCTCCTCCAGGTTAAC‑‑ggagga < 2:125324/149‑1 (MQ=255) cGCCTGGTGCAGCAACATCCGCGAATTGATGAATAAGCTGAAACGGATGGCCTGATGTGACGCTGTCTTATCAGGCCAATTGAACTCTTAAGGTTCACTTAATCTCTGACGCGCATACTCTCCTCCAGGTTAAC‑‑GGAGGAGAGTGCAAt < 1:294561/149‑1 (MQ=255) cTGGTGCAGCAACATCCGCGAATTGATGAATAAGCTGAAACGGATGGCCTGATGTGACGCTGTCTTATCAGGCCAATTGAACTCTTAAGGTTCACTTAATCTCTGACGCGCATACTCTCCTCCAGGTTAAC‑‑GGAGGAGAGTGCAATGaa > 1:264769/1‑149 (MQ=255) gTGCAGCAACATCCGCGAATTGATGAATAAGCTGAAACGGATGGCCTGATGTGACGCTGTCTTATCAGGCCAATTGAACTCTTAAGGTTCACTTAATCTCTGACGCGCATACTCTCCTCCAGGTTAAC‑‑GGAGGAGAGTGCAATGaaaaa < 1:365084/149‑1 (MQ=255) tGCAGCAACATCCGCGAATTGATGAATAAGCTGAAACGGATGGCCTGATGTGACGCTGTCTTATCAGGCCAATTGAACTCTTAAGGTTCACTTAATCTCTGACGCGCATACTCTCCTCC‑‑GTTAACCTGGAGGAGAGtatgcgc < 1:251324/143‑7 (MQ=38) tGCAGCAACATCCGCGAATTGATGAATAAGCTGAAACGGATGGCCTGATGTGACGCTGTCTTATCAGGCCAATTGAACTCTTAAGGTTCACTTAATCTCTGACGCGCATACTCTCCTCC‑‑GTTAACCTGGAGGAGAGtatgcgc > 2:251324/1‑137 (MQ=38) agcaACATCCGCGAATTGATGAATAAGCTGAAACGGATGGCCTGATGTGACGCTGTCTTATCAGGCCAATTGAACTCTTAAGGTTCACTTAATCTCTGACGCGCATACTCTCCTCCAGGTTAAC‑‑GGAGGAGAGTGCAATGAAAAACCgt > 1:177180/1‑149 (MQ=255) agcaACATCCGCGAATTGATGAATAAGCTGAAACGGATGGCCTGATGTGACGCTGTCTTATCAGGCCAATTGAACTCTTAAGGTTCACTTAATCTCTGACGCGCATACTCTCCTCCAGGTTAAC‑‑GGAGGAGAGTGCAATGAAAAACCgt < 2:177180/149‑1 (MQ=255) aCATCCGCGAATTGATGAATAAGCTGGAACGGATGGCCTGATGTGACGCTGTCTTATCAGGCCAATTGAACTCTTAAGGTTCACTTAATCTCTGACGCGCATACTCTCCTCAAGGTTAAC‑‑GGAGGAGAGTGCAATGAAAAACCCTGttt > 2:248304/1‑149 (MQ=255) gcgAATTGATGAATAAGCTGAAACGGATGGCCTGATGTGACGCTGTCTTATCAGGCCAATTGAACTCTTAAGGTTCACTTAATCTCTGACGCGCATACTCTCCTCCAGGTTAAC‑‑GGAGGAGAGTGCAATGAAAAACCGTGTTTATGaaa > 1:610932/1‑149 (MQ=255) tgaATAAGCTGAAACGGATGGCCTGATGTGACGCTGTCTTATCAGGCCAATTGAACTCTTAAGGTTCACTTAATCTCTGACGCGCATACTCTCCTCCAGGTTAAC‑‑GGAGGAGAGTGCAATGAAAAACCGTGTTTATGAAAGTTTAACTa > 1:112822/1‑149 (MQ=255) aaTAAGCTGAAACGGATGGCCTGATGTGACGCTGTCTTATCAGGCCAATTGAACTCTTAAGGTTCACTTAATCTCTGACGCGCATACTCTCCTCCAGGTTAAC‑‑GGAGGAGAGTGCAATGAAAAACCGTGTTTATGAAAGTTTAACTAcc < 2:610932/149‑1 (MQ=255) aaTAAGCTGAAACGGATGGCCTGATGGGACGCTGTCTTATCAGGCCAATTGAACTCTTAAGGTTCACTTAATCTCTGACGCGCATACTCTCCTCCAGGTTAAC‑‑GGAGGAGAGTGCAATGAAAAACCGTGTTTATGAAAGTTTAACTAcc < 2:56026/149‑1 (MQ=255) tAAGCTGAAACGGATGGCCTGATGTGACGCTGTCTTATCAGGCCAATTGAACTCTTAAGGTTCACTTAATCTCTGACGCGCATACTCTCCTCCAg < 2:98518/95‑1 (MQ=255) tAAGCTGAAACGGATGGCCTGATGTGACGCTGTCTTATCAGGCCAATTGAACTCTTAAGGTTCACTTAATCTCTGACGCGCATACTCTCCTCCAg > 1:98518/1‑95 (MQ=255) gAAACGGATGGCCTGATGTGACGCTGTCTTATCAGGCCAATTGAACTCTTAAAATGCTCTTAATCTCTGACGCGCATACTCTCCTCCAGGTTAAC‑‑GGAGGAGAGTGCAATGAAAAACCGTGTTCATGAAAGTTTAACTACCGTGTTAAg > 2:302202/1‑149 (MQ=255) aaCGGATGGCCTGATGTGACGCTGTCTTATCAGGCCAATTGAACTCTTAAGGTTCACTTAATCTCTGACGCGCATACTCTCCTCCAGGTTAAC‑‑GGAGGAGAGTGCAATGAAAAACCGTGTTTATGAAAGTTTAACTACCGTGTTCAGCg < 2:109923/149‑1 (MQ=255) cTGATGTGACGCTGTCTTATCAGGCCAATTGAAGTCTTAAGGTTCACTTAATCTCTGACGCGCATACTCTCCTCCAGGTTAAC‑‑GGAGGAGAGTGCAATGATAAACCGTGTTTATGAAAGTTTAACTACTGTGTTCAGGGTGCTggtggt > 2:187812/1‑149 (MQ=255) aTGTGACGCTGTCTTATCAGGCCAATTGAACTCTTAAGGTTCACTTAATCTCTGACGCGCATACTCTCCTCCAGGTTAAC‑‑GGAGgaga > 2:177598/1‑88 (MQ=255) aTGTGACGCTGTCTTATCAGGCCAATTGAACTCTTAAGGTTCACTTAATCTCTGACGCGCATACTCTCCTCCAGGTTAAC‑‑GGAGgaga < 1:177598/88‑1 (MQ=255) cTGTCTTATCAGGCCAATTGAACTCTTAAGGTTCACTTAATCTCTGACGCGCATACTCTCCTCCAGGTTAAC‑‑GGAGGAGAGTGCAATGAAAAACCGTGTTTATGAAAGTTTAACTACCGTGTTCAGCGTGCTGGTGGTCAGCAGctttc > 2:566121/1‑149 (MQ=255) tGTCTTATCAGGCCAATTGAACTCTTAAGGTTCACTTAATCTCTGACGGGCATACTCTCCTCCAGGTTAAC‑‑GGAGGAGAGTGCAATGAAAACCCGTGTTTATGAAAGTTTAACTACCGTGTTCAGCGTGCTGGTGGTCAGCAGctttct < 2:112506/149‑1 (MQ=255) ggCCAATTGAACTCTTAAGGTTCACTTAATCTCTGACGCGCCTACTCTCCTCCAGGTTAAC‑‑GGAGGAGAGTCCAATGAAAAACCGTGTTTATGAAAGTTTAACTACCGTGTTCAGCGTGCTGGTGATCAGGAGCTTTCTTTATATCTgg > 2:348606/1‑149 (MQ=255) cAATTGAACTCTTAAGGTTCACTTAATCTCTGACGCGCATACTCTCCTCCAGGTTAAC‑‑GGAGGAGAGTGCAATGAAAAACCGTGTTTATGAAAGTTTAACTAcc > 1:435837/1‑104 (MQ=255) cAATTGAACTCTTAAGGTTCACTTAATCTCTGACGCGCATACTCTCCTCCAGGTTAAC‑‑GGAGGAGAGTGCAATGAAAAACCGTGTTTATGAAAGTTTAACTAcc < 2:435837/104‑1 (MQ=255) aaTTGAACTCTTAAGGTTCACTTAATCTCTGACGCGCATACTCTCCTCCAGGTTAAC‑‑GGAGGAGAGTGCAATGAAAAACCGTGTTTATGAAAGTTTCCATACAGACAACAGCTTGTTGGGCGTCAGCAGCTTTCTTTATATCTGGTTTg > 2:687050/1‑149 (MQ=255) aaCTCTTAAGGTTCACTTAATCTCTGACGCGCATACTCTCCTCCAGGTTAAC‑‑GGAGGAGAGTGCAATGAAAAACCGTGTTTATGAAAGTTTAACTACCGTGTTCAGCGTGCTGGTGGTCAGCAGCTTTCTTTATATCTGGTTTGCCACg < 2:169744/149‑1 (MQ=255) tctTAAGGTTCACTTAATCTCTGACGCGCATACTCTCCTCCAGGTTAAC‑‑GGAGGAGAGTGCAATGAAAAACCGTGTTTATGAAAGTTTAACTACCGTGTTCAGCGTGCTGGTGGTCAGCAGCTTTCTTTATATCTGGTTTGCCACGTAc > 1:344676/1‑149 (MQ=255) ttAATCTCTGACGCGCATACTCTCCTCCAGGTTAAC‑‑GGAGGAGAGTGCAATGAAAAACCGTGTTTATGAAAGTTTAACTACCGTGTTCAGCGTGCTGGTGGTCAGCAGCTTTCTTTATATCTGGTTTGCCACGTACTGAtctt < 1:604452/143‑1 (MQ=255) ttAATCTCTGACGCGCATACTCTCCTCCAGGTTAAC‑‑GGAGGAGAGTGCAATGAAAAACCGTGTTTATGAAAGTTTAACTACCGTGTTCAGCGTGCTGGTGGTCAGCAGCTTTCTTTATATCTGGTTTGCCACGTACTGAtctt > 2:604452/1‑143 (MQ=255) tGACGCGCATACTCTCCTCCAGGTTAAC‑‑GGAGGAGAGTGCAATGAAAAACCGTGTTTATGAAAGTTTAACTACCGTGTTCAGCGTGCTGGTGGTCAGCAGCTTTCTTTATATCTGGTTTGCCAAGTACTGATCTTTCTTCAGCCGTAcc > 2:684897/1‑149 (MQ=255) tctcCTCCAGGTTAAC‑‑GGAGGAGAGTGCAATGAAAAACCGTGTTTATGAAAGTTTAACTACCGTGTTCAGCGTGCTGGTGGTCAGCAGCTTTCTTTATATCTGGTTTGCCACGTACTGATCTTTCTTCAGCCGTACCCAGGCCCGCGTg > 2:472310/1‑149 (MQ=255) tctcCTCCAGGTTAAC‑‑GGAGGAGAGTGCAATGAAAAACCGTGTTTATGAAAGTTTAACTACCGTGTTCAGCGTGCTGGTGGTCAGCAGCTTTCTTTATATCTGGTTTGCCACGTACTGATCTTTCTTCAGCCGTACCCAGGCCCGCGTg > 1:80875/1‑149 (MQ=255) tcctccAGGTTAAC‑‑GGAGGAGAGTGCAATGAAAAACCGTGTTTATGAAAGTTTAACTACCGTGTTCAGCGTGCTGGTGGTCAGCAGCTTTCTTTATATCTGGTTTGCCACGTa > 1:512128/1‑113 (MQ=255) tcctccAGGTTAAC‑‑GGAGGAGAGTGCAATGAAAAACCGTGTTTATGAAAGTTTAACTACCGTGTTCAGCGTGCTGGTGGTCAGCAGCTTTCTTTATATCTGGTTTGCCACGTa < 2:512128/113‑1 (MQ=255) tcctccAGGTTAAC‑‑GGAGGAGAGTGCAATGAAAAACCGTGTTTATGAAAGTTTAACTACCGTGTTCAGCGTGCTGGTGGTCAGCAGCTTTCTTTATATCTGGTTTGCCACGTACTGATCTTTCTTCAGCCGTACCCAGGCCCGCGTGcc > 2:374152/1‑149 (MQ=255) tcctccAGGTTAAC‑‑GGAGGAGAGTGCAATGAAAAACCGTGTTTATGAAAGTTTAACTACCGTGTTCAGCGTGCTGGTGGTCAGCAGCTTTCTTTATATCTGGTTTGCCACGTACTGATCTTTCTTCAGCCGTACCCAGGCCCGCGTGcc > 2:342437/1‑149 (MQ=255) | GATTTGCAGGCGAAACGTACCCGCCTGGTGCAGCAACATCCGCGAATTGATGAATAAGCTGAAACGGATGGCCTGATGTGACGCTGTCTTATCAGGCCAATTGAACTCTTAAGGTTCACTTAATCTCTGACGCGCATACTCTCCTCCAGGTTAAC‑‑GGAGGAGAGTGCAATGAAAAACCGTGTTTATGAAAGTTTAACTACCGTGTTCAGCGTGCTGGTGGTCAGCAGCTTTCTTTATATCTGGTTTGCCACGTACTGATCTTTCTTCAGCCGTACCCAGGCCCGCGTGCC > NC_000913_3_pae_pgi/4331208‑4331497 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |