New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913_3_pae_pgi	= 4331354	NA (NA)	6 (0.160)	6/260	4.3	16.2%	intergenic (+90/‑22)	proP/pmrR	proline/glycine betaine transporter/putative membrane‑bound BasS regulator
	?	NC_000913_3_pae_pgi	= 4331362	31 (0.830)					intergenic (+98/‑14)	proP/pmrR	proline/glycine betaine transporter/putative membrane‑bound BasS regulator
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

GAAACGTACCCGCCTGGTGCAGCAACATCCGCGAATTGATGAATAAGCTGAAACGGATGGCCTGATGTGACGCTGTCTTATCAGGCCAATTGAACTCTTAAGGTTCACTTAATCTCTGACGCGCATACTCTCCTCCAGGTTAAC‑‑GGAGGAGAGTGCAATGAAAAACCGTGTTTATGAAAGTTTAACTACCGTGTTCAGCGTGCTGGTGGTCAGCAGCTTTCTTTATATCTGGTTTGCCACGTACTGATCTTTCTTCAGCCGTACCCAGGCCCGCGTGCCGGAAGTCT  >  NC_000913_3_pae_pgi/4331219‑4331505                                                                                                                                                |                                                                                                                                                  gAAACGTACCCGCCTGGTGCAGCAACATCCGCGAATTGATGAATAAGCTGAAACGGATGGCCTGATGTGACGCTGTCTTATCAGGCCAATTGAACTCTTAAGGTTCACTTAATCTCTGACGCGCATACTCTCCTCCAGGTTAAC‑‑ggagg                                                                                                                                            >  2:498655/1‑149 (MQ=255)  aaaCGTACCCGCCTGGTGCAGCAACATCCGCGAATTGATGAATAAGCTGAAACGGATGGCCTGATGTGACGCTGTCTTATCAGGCCAATTGAACTCTTAAGGTTCACTTAATCTCTGACGCGCATACTCTCCTCCAGGTTAAC‑‑ggagga                                                                                                                                           <  2:125324/149‑1 (MQ=255)           cGCCTGGTGCAGCAACATCCGCGAATTGATGAATAAGCTGAAACGGATGGCCTGATGTGACGCTGTCTTATCAGGCCAATTGAACTCTTAAGGTTCACTTAATCTCTGACGCGCATACTCTCCTCCAGGTTAAC‑‑GGAGGAGAGTGCAAt                                                                                                                                  <  1:294561/149‑1 (MQ=255)              cTGGTGCAGCAACATCCGCGAATTGATGAATAAGCTGAAACGGATGGCCTGATGTGACGCTGTCTTATCAGGCCAATTGAACTCTTAAGGTTCACTTAATCTCTGACGCGCATACTCTCCTCCAGGTTAAC‑‑GGAGGAGAGTGCAATGaa                                                                                                                               >  1:264769/1‑149 (MQ=255)                 gTGCAGCAACATCCGCGAATTGATGAATAAGCTGAAACGGATGGCCTGATGTGACGCTGTCTTATCAGGCCAATTGAACTCTTAAGGTTCACTTAATCTCTGACGCGCATACTCTCCTCCAGGTTAAC‑‑GGAGGAGAGTGCAATGaaaaa                                                                                                                            <  1:365084/149‑1 (MQ=255)                  tGCAGCAACATCCGCGAATTGATGAATAAGCTGAAACGGATGGCCTGATGTGACGCTGTCTTATCAGGCCAATTGAACTCTTAAGGTTCACTTAATCTCTGACGCGCATACTCTCCTCC‑‑GTTAACCTGGAGGAGAGtatgcgc                                                                                                                                 >  2:251324/1‑137 (MQ=38)                  tGCAGCAACATCCGCGAATTGATGAATAAGCTGAAACGGATGGCCTGATGTGACGCTGTCTTATCAGGCCAATTGAACTCTTAAGGTTCACTTAATCTCTGACGCGCATACTCTCCTCC‑‑GTTAACCTGGAGGAGAGtatgcgc                                                                                                                                 <  1:251324/143‑7 (MQ=38)                     agcaACATCCGCGAATTGATGAATAAGCTGAAACGGATGGCCTGATGTGACGCTGTCTTATCAGGCCAATTGAACTCTTAAGGTTCACTTAATCTCTGACGCGCATACTCTCCTCCAGGTTAAC‑‑GGAGGAGAGTGCAATGAAAAACCgt                                                                                                                        >  1:177180/1‑149 (MQ=255)                     agcaACATCCGCGAATTGATGAATAAGCTGAAACGGATGGCCTGATGTGACGCTGTCTTATCAGGCCAATTGAACTCTTAAGGTTCACTTAATCTCTGACGCGCATACTCTCCTCCAGGTTAAC‑‑GGAGGAGAGTGCAATGAAAAACCgt                                                                                                                        <  2:177180/149‑1 (MQ=255)                         aCATCCGCGAATTGATGAATAAGCTGGAACGGATGGCCTGATGTGACGCTGTCTTATCAGGCCAATTGAACTCTTAAGGTTCACTTAATCTCTGACGCGCATACTCTCCTCAAGGTTAAC‑‑GGAGGAGAGTGCAATGAAAAACCCTGttt                                                                                                                    >  2:248304/1‑149 (MQ=255)                               gcgAATTGATGAATAAGCTGAAACGGATGGCCTGATGTGACGCTGTCTTATCAGGCCAATTGAACTCTTAAGGTTCACTTAATCTCTGACGCGCATACTCTCCTCCAGGTTAAC‑‑GGAGGAGAGTGCAATGAAAAACCGTGTTTATGaaa                                                                                                              >  1:610932/1‑149 (MQ=255)                                        tgaATAAGCTGAAACGGATGGCCTGATGTGACGCTGTCTTATCAGGCCAATTGAACTCTTAAGGTTCACTTAATCTCTGACGCGCATACTCTCCTCCAGGTTAAC‑‑GGAGGAGAGTGCAATGAAAAACCGTGTTTATGAAAGTTTAACTa                                                                                                     >  1:112822/1‑149 (MQ=255)                                          aaTAAGCTGAAACGGATGGCCTGATGTGACGCTGTCTTATCAGGCCAATTGAACTCTTAAGGTTCACTTAATCTCTGACGCGCATACTCTCCTCCAGGTTAAC‑‑GGAGGAGAGTGCAATGAAAAACCGTGTTTATGAAAGTTTAACTAcc                                                                                                   <  2:610932/149‑1 (MQ=255)                                          aaTAAGCTGAAACGGATGGCCTGATGGGACGCTGTCTTATCAGGCCAATTGAACTCTTAAGGTTCACTTAATCTCTGACGCGCATACTCTCCTCCAGGTTAAC‑‑GGAGGAGAGTGCAATGAAAAACCGTGTTTATGAAAGTTTAACTAcc                                                                                                   <  2:56026/149‑1 (MQ=255)                                                  gAAACGGATGGCCTGATGTGACGCTGTCTTATCAGGCCAATTGAACTCTTAAAATGCTCTTAATCTCTGACGCGCATACTCTCCTCCAGGTTAAC‑‑GGAGGAGAGTGCAATGAAAAACCGTGTTCATGAAAGTTTAACTACCGTGTTAAg                                                                                           >  2:302202/1‑149 (MQ=255)                                                    aaCGGATGGCCTGATGTGACGCTGTCTTATCAGGCCAATTGAACTCTTAAGGTTCACTTAATCTCTGACGCGCATACTCTCCTCCAGGTTAAC‑‑GGAGGAGAGTGCAATGAAAAACCGTGTTTATGAAAGTTTAACTACCGTGTTCAGCg                                                                                         <  2:109923/149‑1 (MQ=255)                                                              cTGATGTGACGCTGTCTTATCAGGCCAATTGAAGTCTTAAGGTTCACTTAATCTCTGACGCGCATACTCTCCTCCAGGTTAAC‑‑GGAGGAGAGTGCAATGATAAACCGTGTTTATGAAAGTTTAACTACTGTGTTCAGGGTGCTggtggt                                                                               >  2:187812/1‑149 (MQ=255)                                                                 aTGTGACGCTGTCTTATCAGGCCAATTGAACTCTTAAGGTTCACTTAATCTCTGACGCGCATACTCTCCTCCAGGTTAAC‑‑GGAGgaga                                                                                                                                         >  2:177598/1‑88 (MQ=255)                                                                 aTGTGACGCTGTCTTATCAGGCCAATTGAACTCTTAAGGTTCACTTAATCTCTGACGCGCATACTCTCCTCCAGGTTAAC‑‑GGAGgaga                                                                                                                                         <  1:177598/88‑1 (MQ=255)                                                                         cTGTCTTATCAGGCCAATTGAACTCTTAAGGTTCACTTAATCTCTGACGCGCATACTCTCCTCCAGGTTAAC‑‑GGAGGAGAGTGCAATGAAAAACCGTGTTTATGAAAGTTTAACTACCGTGTTCAGCGTGCTGGTGGTCAGCAGctttc                                                                    >  2:566121/1‑149 (MQ=255)                                                                          tGTCTTATCAGGCCAATTGAACTCTTAAGGTTCACTTAATCTCTGACGGGCATACTCTCCTCCAGGTTAAC‑‑GGAGGAGAGTGCAATGAAAACCCGTGTTTATGAAAGTTTAACTACCGTGTTCAGCGTGCTGGTGGTCAGCAGctttct                                                                   <  2:112506/149‑1 (MQ=255)                                                                                    ggCCAATTGAACTCTTAAGGTTCACTTAATCTCTGACGCGCCTACTCTCCTCCAGGTTAAC‑‑GGAGGAGAGTCCAATGAAAAACCGTGTTTATGAAAGTTTAACTACCGTGTTCAGCGTGCTGGTGATCAGGAGCTTTCTTTATATCTgg                                                         >  2:348606/1‑149 (MQ=255)                                                                                       cAATTGAACTCTTAAGGTTCACTTAATCTCTGACGCGCATACTCTCCTCCAGGTTAAC‑‑GGAGGAGAGTGCAATGAAAAACCGTGTTTATGAAAGTTTAACTAcc                                                                                                   >  1:435837/1‑104 (MQ=255)                                                                                       cAATTGAACTCTTAAGGTTCACTTAATCTCTGACGCGCATACTCTCCTCCAGGTTAAC‑‑GGAGGAGAGTGCAATGAAAAACCGTGTTTATGAAAGTTTAACTAcc                                                                                                   <  2:435837/104‑1 (MQ=255)                                                                                        aaTTGAACTCTTAAGGTTCACTTAATCTCTGACGCGCATACTCTCCTCCAGGTTAAC‑‑GGAGGAGAGTGCAATGAAAAACCGTGTTTATGAAAGTTTCCATACAGACAACAGCTTGTTGGGCGTCAGCAGCTTTCTTTATATCTGGTTTg                                                     >  2:687050/1‑149 (MQ=255)                                                                                             aaCTCTTAAGGTTCACTTAATCTCTGACGCGCATACTCTCCTCCAGGTTAAC‑‑GGAGGAGAGTGCAATGAAAAACCGTGTTTATGAAAGTTTAACTACCGTGTTCAGCGTGCTGGTGGTCAGCAGCTTTCTTTATATCTGGTTTGCCACg                                                <  2:169744/149‑1 (MQ=255)                                                                                                tctTAAGGTTCACTTAATCTCTGACGCGCATACTCTCCTCCAGGTTAAC‑‑GGAGGAGAGTGCAATGAAAAACCGTGTTTATGAAAGTTTAACTACCGTGTTCAGCGTGCTGGTGGTCAGCAGCTTTCTTTATATCTGGTTTGCCACGTAc                                             >  1:344676/1‑149 (MQ=255)                                                                                                             ttAATCTCTGACGCGCATACTCTCCTCCAGGTTAAC‑‑GGAGGAGAGTGCAATGAAAAACCGTGTTTATGAAAGTTTAACTACCGTGTTCAGCGTGCTGGTGGTCAGCAGCTTTCTTTATATCTGGTTTGCCACGTACTGAtctt                                      <  1:604452/143‑1 (MQ=255)                                                                                                             ttAATCTCTGACGCGCATACTCTCCTCCAGGTTAAC‑‑GGAGGAGAGTGCAATGAAAAACCGTGTTTATGAAAGTTTAACTACCGTGTTCAGCGTGCTGGTGGTCAGCAGCTTTCTTTATATCTGGTTTGCCACGTACTGAtctt                                      >  2:604452/1‑143 (MQ=255)                                                                                                                     tGACGCGCATACTCTCCTCCAGGTTAAC‑‑GGAGGAGAGTGCAATGAAAAACCGTGTTTATGAAAGTTTAACTACCGTGTTCAGCGTGCTGGTGGTCAGCAGCTTTCTTTATATCTGGTTTGCCAAGTACTGATCTTTCTTCAGCCGTAcc                        >  2:684897/1‑149 (MQ=255)                                                                                                                                 tctcCTCCAGGTTAAC‑‑GGAGGAGAGTGCAATGAAAAACCGTGTTTATGAAAGTTTAACTACCGTGTTCAGCGTGCTGGTGGTCAGCAGCTTTCTTTATATCTGGTTTGCCACGTACTGATCTTTCTTCAGCCGTACCCAGGCCCGCGTg            >  2:472310/1‑149 (MQ=255)                                                                                                                                 tctcCTCCAGGTTAAC‑‑GGAGGAGAGTGCAATGAAAAACCGTGTTTATGAAAGTTTAACTACCGTGTTCAGCGTGCTGGTGGTCAGCAGCTTTCTTTATATCTGGTTTGCCACGTACTGATCTTTCTTCAGCCGTACCCAGGCCCGCGTg            >  1:80875/1‑149 (MQ=255)                                                                                                                                   tcctccAGGTTAAC‑‑GGAGGAGAGTGCAATGAAAAACCGTGTTTATGAAAGTTTAACTACCGTGTTCAGCGTGCTGGTGGTCAGCAGCTTTCTTTATATCTGGTTTGCCACGTa                                              <  2:512128/113‑1 (MQ=255)                                                                                                                                   tcctccAGGTTAAC‑‑GGAGGAGAGTGCAATGAAAAACCGTGTTTATGAAAGTTTAACTACCGTGTTCAGCGTGCTGGTGGTCAGCAGCTTTCTTTATATCTGGTTTGCCACGTa                                              >  1:512128/1‑113 (MQ=255)                                                                                                                                   tcctccAGGTTAAC‑‑GGAGGAGAGTGCAATGAAAAACCGTGTTTATGAAAGTTTAACTACCGTGTTCAGCGTGCTGGTGGTCAGCAGCTTTCTTTATATCTGGTTTGCCACGTACTGATCTTTCTTCAGCCGTACCCAGGCCCGCGTGcc          >  2:342437/1‑149 (MQ=255)                                                                                                                                   tcctccAGGTTAAC‑‑GGAGGAGAGTGCAATGAAAAACCGTGTTTATGAAAGTTTAACTACCGTGTTCAGCGTGCTGGTGGTCAGCAGCTTTCTTTATATCTGGTTTGCCACGTACTGATCTTTCTTCAGCCGTACCCAGGCCCGCGTGcc          >  2:374152/1‑149 (MQ=255)                                                                                                                                           gTTAAC‑‑GGAGGAGAGTGCAATGAAAAACCGTGTTTATGAAAGTTTAACTACCGTGTTCAGCGTGCTGGTGGTCAGCAGCTTTCTTTATATCTGGTTTGCCACGTACTGATCTTTCTTCAGCCGTACCCAGGCCCGCGTGCCGGAAGtct  >  1:531714/1‑149 (MQ=255)                                                                                                                                                |                                                                                                                                                  GAAACGTACCCGCCTGGTGCAGCAACATCCGCGAATTGATGAATAAGCTGAAACGGATGGCCTGATGTGACGCTGTCTTATCAGGCCAATTGAACTCTTAAGGTTCACTTAATCTCTGACGCGCATACTCTCCTCCAGGTTAAC‑‑GGAGGAGAGTGCAATGAAAAACCGTGTTTATGAAAGTTTAACTACCGTGTTCAGCGTGCTGGTGGTCAGCAGCTTTCTTTATATCTGGTTTGCCACGTACTGATCTTTCTTCAGCCGTACCCAGGCCCGCGTGCCGGAAGTCT  >  NC_000913_3_pae_pgi/4331219‑4331505

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.