New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913_3_pae_pgi = 2068406194 (1.920)29 (0.330) 19/226 6.6 15.8% pseudogene (14/159 nt) yoeH pseudogene, CP4‑44 putative prophage remnant;Phage or Prophage Related
?NC_000913_3_pae_pgi = 2068411 143 (1.640)pseudogene (9/159 nt) yoeH pseudogene, CP4‑44 putative prophage remnant;Phage or Prophage Related
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

Only 100 of 206 total aligned reads displayed.

CGGACCTGATACTGATATGAGTCTTACCGCATATACGGTCAATTTCAGCAATTAATTACATTATCCACGCCAAAGTATTTGTCATCACAATGATGGTACCTTCTTTCAGACACCATTTTTTCAACTCCGTTTTCCACGGACCGCACTCTT‑ATGTCAAGAGTGCGGTCCGTGGATACAACCAGAGACCGACTGACACGAGTCAGAGGAAACGACGGATATGTTCAGTCGTAAAATATCTATCAAAAAACATGATTAAGGTCAAAAATGTTTGATATTTACAATTTATGAAGATGACA  >  NC_000913_3_pae_pgi/2068257‑2068552
                                                                                                                                                     |                                                                                                                                                   
cGGACCTGATACTGATATGAGTCTTACCGCATATACGGTCAATTTCAGCAATTAATTACATTATCCACGCCAAAGTATTTGTCATCACAATGATGGTACCTTCTTTCAGACACCATTTTTTCAACTCCGTTTTCCACGGACCGCACTCtt                                                                                                                                                     <  1:353705/150‑1 (MQ=255)
  gACCTGATACTGATATGAGTCTTACCGCATATACGGTCAATTTCAGCAATTAATTACATTATCCACGCCAAAGTATTTGTCATCACAATGATGGTACCTTCTTTCAGACACCATTTTTTCAACTCCGTTTTCCACGGACCGCACTCTT‑At                                                                                                                                                  >  2:68841/1‑150 (MQ=255)
   aCCTGATACTGATATGAGTCTTACCGCATATACGGTCAATTTCAGCAATTAATTACATTATCCACGCCAAAGTATTTGTCATCACAATGATGGTACCTTCTTTCAGACACCATTTTTTCAACTCCGTTTTCCACGGACCGCACTCttgac                                                                                                                                                  <  3:382157/150‑4 (MQ=255)
   aCCTGATACTGATATGAGTCTTACCGCATATACGGTCAATTTCAGCAATTAATTACATTATCCACGCCAAAGTATTTGTCATCACAATGATGGTACCTTCTTTCAGACACCATTTTTTCAACTCCGTTTTCCACGGACCGCACTCTT‑ATg                                                                                                                                                 <  3:326437/150‑1 (MQ=255)
    ccTGATACTGATATGAGTCTTACCGCATATACGGTCAATTTCAGCAATTAATTACATTATCCACGCCAAAGTATTTGTCATCACAATGATGGTACCTTCTTTCAGACACCATTTTTTCAACTCCGTTTTCCACGGACCGCACTCTT‑ATGt                                                                                                                                                <  2:1180047/150‑1 (MQ=255)
       gatactgataTGAGTCTTACCGCATATACGGTCAATTTCAGCAATTAATTACATTATCCACGCCAAAGTATTTGTCATCACAATGATGGTACCTTCTTTCAGACACCATTTTTTCAACTCCGTTTTCCACGGACCGCACTCTT‑ATGTCaa                                                                                                                                             <  1:805904/150‑1 (MQ=255)
        atactgataTGAGTCTTACCGCATATACGGTCAATTTCAGCAATTAATTACATTATCCACGCCAAAGTATTTGTCATCACAATGATGGTACCTTCTTTCAGACACCATTTTTTCAACTCCGTTTTCCACGGACCGCACTCTT‑ATGTCAag                                                                                                                                            >  3:507257/1‑150 (MQ=255)
         tactgataTGAGTCTTACCGCATATACGGTCAATTTCAGCAATTAATTACATTATCCACGCCAAAGTATTTGTCATCACAATGATGGTACCTTCTTTCAGACACCATTTTTTCAACTCCGTTTTCCACGGACCGCACTCTT‑ATGTCAaga                                                                                                                                           <  3:500464/150‑1 (MQ=255)
            tgataTGAGTCTTACCGCATATACGGTCAATTTCAGCAATTAATTACATTATCCACGCCAAAGTATTTGTCATCACAATGATGGTACCTTCTTTCAGACACCATTTTTTCAACTCCGTTTTCCACGGACCGCACTCTT‑ATGTCAAGAGTg                                                                                                                                        >  2:843431/1‑150 (MQ=255)
              atatGAGTCTTACCGCATATACGGTCAATTTCAGCAATTAATTACATTATCCACGCCAAAGTATTTGTCATCACAATGATGGTACCTTCTTTCAGACACCATTTTTTCAACTCCGTTTTCCACGGACCGCACTCTT‑ATGTCAAGAGTGCg                                                                                                                                      <  3:41562/150‑1 (MQ=255)
                atGATTCTTACCGCATATACGGTCAATTTCAGCAATTAATTACATTATCCACGCCAAAGTATTTGTCATCACAATGATGGTACCTTCTTTCAGACACCATTTTTTCAACGCCGTTTTCCACGGACCGCACTCTT‑ATGTCAAGAGTGCggg                                                                                                                                    <  2:44721/150‑2 (MQ=255)
                 tGAGTCTTACCGCATATACGGTCAATTTCAGCAATTAATTACATTATCCACGCCAAAGTATTTGTCATCACAATGATGGTACCTTCTTTCAGACACCATTTTTTCAACTCCGTTTTCCACGGACCGCACTCTT‑ATGTCAAGAGTGCGGTc                                                                                                                                   >  2:175341/1‑150 (MQ=255)
                  gAGTCTTACCGCATATACGGTCAATTTCAGCAATTAATTACATTATCCACGCCAAAGTATTTGTCATCACAATGATGGTACCTTCTTTCAGACACCATTTTTTCAACTCCGTTTTCCACGGACCGCACTCTT‑ATGTCAAGAGTGCGGTcc                                                                                                                                  >  1:602060/1‑150 (MQ=255)
                  gAGTCTTACCGCATATACGGTCAATTTCAGCAATTAATTACATTATCCACGCCAAAGCATTTGTCATCACAATGATGGTACCTTCTTTCAGACACCATTTTTTCAACTCCGTTTTCCACGGACCGCACTCTT‑ATGTCAAGAGTGCGGTcc                                                                                                                                  >  2:620255/1‑150 (MQ=255)
                     tCTTACCGCATATACGGTCAATTTCAGCAATTAATTACATTATCCACGCCAAAGTATTTGTCATCACAATGATGGTACCTTCTTTCAGACACCATTTTTTCAACTCCGTTTTCCACGGACCGCACTCTT‑ATGTCAAGAGTGCGGTCCGTg                                                                                                                               <  2:1101849/150‑1 (MQ=255)
                      cTTACCGCATATACGGTCAATTTCAGCAATTAATTACATTATCCACGCCAAAGTATTTGTCATCACAATGATGGTACCTTCTTTCAGACACCATTTTTTCAACTCCGTTTTCCACGGACCGCACTCTT‑GACATAAGAGTGCGGTCCGTgg                                                                                                                              <  1:956266/150‑1 (MQ=38)
                          cctcATATACGGTCAATTTCAGCAATTAATTACATTATCCACGCCAAAGTATTTTTCATCACAATGATGGTACCTTCTTCCAGACACCATTTTTTCATCTCCGTCTTCCACGGACCGCGCTCTT‑GACATAACAGTGCGGTCCGTGGaaaa                                                                                                                          <  4:713506/147‑4 (MQ=37)
                           cGCATATACGGTCAATTTCAGCAATTAATTACATTATCCACGCCAAAGTATTTGTCATCACAATGATGGTACCTTCTTTCAGACACCATTTTTTCAACTCCGTTTTCCACGGACCGCACTCTT‑ATGTCAAGAGTGCGGTCCGTGGATACa                                                                                                                         >  2:998061/1‑150 (MQ=255)
                            gCATATACGGTCAATTTCAGCAATTAATTACATTATCCACGCCAAAGTATTTGTCATCACAATGATGGTACCTTCTTTCAGACACCATTTTTTCAACTCCGTTTTCCACGGACCGCACTCTT‑ATGTCAAGAGTGCGGTCCGTGGATACaa                                                                                                                        <  1:982667/150‑1 (MQ=255)
                              atatACGGTCAATTTCAGCAATTAATTACATTATCCACGCCAAAGTATTTGTCATCACAATGATGGTACCTTCTTTCAGACACCATTTTTTCAACTCCGTTTTCCACGGACCGCACTCTT‑ATGTCAAGAGTGCGGTcc                                                                                                                                  >  3:155940/1‑138 (MQ=255)
                                    ggTCAATTTCAGCAATTAATTACATTATCCACGCCAAAGTATTTGTCATCACAATGATGGTACCTTCTTTCAGACACCATTTTTTCAACTCCGTTTTCCACGGACCGCACTCTT‑ATGTCAAGAGTGCGGTCCGTGGATACAACCAGAGAc                                                                                                                >  3:159913/1‑150 (MQ=255)
                                     gTCAATTTCAGCAATTAATTACATTATCCACGCCAAAGTATTTGTCATCACAATGATGGTACCTTCTTTCAGACACCATTTTTTCAACTCCGTTTTCCACGGACCGCACTCTT‑ATGTCAAGAGTGCGGTCCGTGGATACAACCAGAGAcc                                                                                                               >  1:1011765/1‑150 (MQ=255)
                                       cAATTTCAGCAATTAATTACATTATCCACGCCAAAGTATTTGTCATCACAATGATGGTACCTTCTTTCAGACACCATTTTTTCAACTCCGTTTTCCACGGACCGCACTCTT‑ATGTCAAGAGTGCGGTCCGTGGATACAACCAGAGACCGa                                                                                                             <  1:774026/150‑1 (MQ=255)
                                            tCAGCAATTAATTACATTATCCACGCCAAAGTATTTGTCATCACAATGATGGTACCTTCTTTCAGACACCATTTTTTCAACTCCGTTTTCCACGGACCGCACTCTT‑ATGTCAAGAGTGCGGTCCGTGGATACAACCAGAGACCGACTGac                                                                                                        <  1:715345/150‑1 (MQ=255)
                                              aGCAATTAATTACATTATCCACGCCAAAGTATTTGTCATCACAATGATGGTACCTTCTTTCAGACACCATTTTTTCAACTCCGTTTTCCACGGACCGCACTCTT‑ATGTCAAGAGTGCg                                                                                                                                      <  4:406469/118‑1 (MQ=255)
                                              aGCAATTAATTACATTATCCACGCCAAAGTATTTGTCATCACAATGATGGTACCTTCTTTCAGACACCATTTTTTCAACTCCGTTTTCCACGGACCGCACTCTT‑ATGTCAAGAGTGCGGTCCGTGGATACAACCAGAGACCGACTGacac                                                                                                      <  2:973076/150‑1 (MQ=255)
                                               gCAATTAATTACATTATCCACGCCAAAGTATTTGTCATCACAATGATGGTACCTTCTTTCAGACACCATTTTTTCAACTCCGTTTTCCACGGACCGCACTCTT‑ATGTCAAGAGTGCGGTCCGTGGATACAACCAGAGACCGACTGACACg                                                                                                     >  1:934946/1‑150 (MQ=255)
                                                cAATTAATTACATTATCCACGCCAAAGTATTTGTCATCACAATGATGGTACCTTCTTTCAGACACCATTTTTTCAACTCCGTTTTCCACGGACCGCACTCTT‑ATGTCAAGAGTGCGGTCCGTGGATACAACCAGAGACCGACTGACACGa                                                                                                    <  1:644709/150‑1 (MQ=255)
                                                  attaattaCATTATCCACGCCAAAGTATTTGTCATCACAATGATGGTACCTTCTTTCAGACACCATTTTTTCAACTCCGTTTTCCACGGACCGCACTCTT‑ATGTCAAGAGTGc                                                                                                                                       >  2:631113/1‑113 (MQ=255)
                                                  attaattaCATTATCCACGCCAAAGTATTTGTCATCACAATGATGGTACCTTCTTTCAGACACCATTTTTTCAACTCCGTTTTCCACGGACCGCACTCTT‑ATGTCAAGAGTGc                                                                                                                                       <  1:631113/113‑1 (MQ=255)
                                                   ttaattaCATTATCCACGCCAAAGTATTTGTCATCACAATGATGGTACCTTCTTTCAGACACCATTTTTTCAACTCCGTTTTCCACGGACCGCACTCTT‑ATGTCAAGAGTGCGGTCCGTGGATACAACCAGAGACCGACTGACACGAGTc                                                                                                 <  2:724490/150‑1 (MQ=255)
                                                    taattaCATTATCCACGCCAAAGTATTTGTCATCACAATGATGGTACCTTCTTTCAGACACCATTTTTTCAACTCCGTTTTCCACGGACCGCACTCTT‑ATGTCAAGAGTGCGGTCCGTGGATACAACCAGAGACCGACTTACACGAGTCa                                                                                                <  3:572514/150‑1 (MQ=255)
                                                       ttaCATTGTCCACGCCAAAGTATTTGTCATCACAATGATGGTACCTTCTTTCAGACACCATTTTTTCAACTCCGTTTTCCACGGACCGCACTCTT‑ATGTCAAGAGTGCGGTCCGTg                                                                                                                               <  4:158228/116‑1 (MQ=255)
                                                       ttaCATTATCCACGCCAAAGTATTTGTCATCACAATGATGGTACCTTCTTTCAGACACCATTTTTTCAACTCCGTTTTCCACGGACCGCACCCTT‑ATGTCa                                                                                                                                              >  4:464299/1‑101 (MQ=255)
                                                          cATTATCCACGCCAAAGTATTTGTCATCACAATGATGGTACCTTCTTTCAGACACCATTTTTTCAACTCCGTTATCCACGGACCGCACTCTTGACAT‑AAGAGTGCGGTCCGTg                                                                                                                               <  4:34721/113‑1 (MQ=25)
                                                            ttATCCACGCCAAAGTATTTGTCATCACAATGATGGTACCTTCTTTCAGACACCATTTTTTCAACTCCGTTTTCCACGGACCGCACTCTT‑ATg                                                                                                                                                 >  1:522762/1‑93 (MQ=255)
                                                            ttATCCACGCCAAAGTATTTGTCATCACAATGATGGTACCTTCTTTCAGACACCATTTTTTCAACTCCGTTTTCCACGGACCGCACTCTT‑ATg                                                                                                                                                 <  2:522762/93‑1 (MQ=255)
                                                            ttATCCACGCCAAAGTATTTGTCATCACAATGATGGTACCTTCTTTCAGACACCATTTTTTCAACTCCGTTTTCCACGGACCGCACTCTT‑ATGTCAAGAGTGCGGTCCGTGGATACAACCAGAGACCGACTGACACGAGTCAGAGGAAac                                                                                        <  4:110227/150‑1 (MQ=255)
                                                               tCCACGCCAAAGTATTTGTCATCACAATGATGGTACCTTCTTTCAGACACCATTTTTTCAACTCCGTTTTCCACGGACCGCACTCTT‑ATGTCAAGAGTGCGGTCCGTGGATACAACCAGAGACCGACTGACACGAGTCAGAGGAAacgac                                                                                     >  4:442783/1‑150 (MQ=255)
                                                               tCCACGCCAAAGTATTTGTCATCACAATGATGGTACCTTCTTTCAGACACCATTTTTTCAACTCCGTTTTCCACGGACCGCACTCTT‑ATGTCAAGAGTGCGGTCCGTGGATACAACCAGAGACCGACTGACACGAGTCAGAGGAAacgac                                                                                     <  3:427935/150‑1 (MQ=255)
                                                                 cACGCCAAAGTATTTGTCATCACAATGATGGTACCTTCTTTCAGACACCATTTTTTCAACTCCGTTTTCCACGGACCGCACTCTT‑ATGTCAAGAGTGCGGTCCGt                                                                                                                                >  1:470581/1‑105 (MQ=255)
                                                                 cACGCCAAAGTATTTGTCATCACAATGATGGTACCTTCTTTCAGACACCATTTTTTCAACTCCGTTTTCCACGGACCGCACTCTT‑ATGTCAAGAGTGCGGTCCGTGGATACAACCAGAGACCGACTGACACGAGTCAGAGGAAACGACgg                                                                                   >  1:761592/1‑150 (MQ=255)
                                                                 cACGCCAAAGTATTTGTCATCACAATGATGGTACCTTCTTTCAGACACCATTTTTTCAACTCCGTTTTCCACGGACCGCACTCTT‑ATGTCAAGAGTGCGGTCCGTGGATACAACCAGAGACCGACTGACACGAGTCAGAGGAAACGACgg                                                                                   <  3:497229/150‑1 (MQ=255)
                                                                  aCGCCAAAGTATTTGTCATCACAATGATGGTACCTTCTTTCAGACACCATTTTTTCAACTCCGTTTTCCACGGACCGCACTCTT‑ATGTCAAGAGTGCGGTCCGTGGATACAACCAGAGACCGACTGACACGAGTCAGAGGAAACGACGGa                                                                                  <  4:84530/150‑1 (MQ=255)
                                                                   cGCCAAAGTATTTGTCATCACAATGATGGTACCTTCTTTCAGACACCATTTTTTCAACTCCGTTTTCCACGGACCGCACTCTT‑ATGTCAAGAGTGCGGTCCGTGGATACAACCAGAGACCGACTGACACGAGTCAGAGGAAACGACGGat                                                                                 <  4:536204/150‑1 (MQ=255)
                                                                   cGCCAAAGTATTCGCCATCACAATGATGGTACCTTCTTTCAGACACCATTTTTTCAACTCCGTTTTCCACGGACCGCACTCTT‑ATGTCAAGAGTGCGGTCCGTGGATACAACCAGAGACCGACTGACACGAGTCAGAGGAAACGACGGat                                                                                 <  1:594253/150‑1 (MQ=255)
                                                                    gCCAAAGTATTTGTCATCACAATGATGGTACCTTCTTTCAGCCACCATTTTTTCAACTCCGTTTTCCACGGACCGCACTCTT‑ATGTCAAGAGTGCGGTCCGTGGATACAACCAGAGAACGACTGACACGAGTCAGAGGAAACGACGGata                                                                                >  2:386451/1‑150 (MQ=255)
                                                                      cAAAGTATTTGTCATCACAATGATGGTACCTTCTTTCAGACACCATTTTTTCAACTCCGTTTTCCACGGACCGCACTCTT‑ATGTCAAGAGTGCg                                                                                                                                      <  4:422534/94‑1 (MQ=255)
                                                                      cAAAGTATTTGTCATCACAATGATGGTACCTTCTTTCAGACACCATTTTTTCAACTCCGTTTTCCACGGACCGCACTCTT‑ATGTCAAGAGTGCGGTCCGTGGATACAACCAGAGACCGACTGACACGAGTCAGAGGAAACGACGGATATg                                                                              >  1:220405/1‑150 (MQ=255)
                                                                      cAAAGTATTTGTCATCACAATGATGGTACCTTCTTTCAGACACCATTTTTTCAACTCCGTTTTCCACGGACCGCACTCTT‑ATGTCAAGAGTGCGGTCCGTGGATACAACCAGAGACCGACTGACACGAGTCAGAGGAAACGACGGATATg                                                                              >  2:243856/1‑150 (MQ=255)
                                                                       aaaGTATTTGTCATCACAATGATGGTACCTTCTTTCAGACACCATTTTTTCAACTCCGTTTTCCACGGACCGCACTCTT‑ATGTCAAGAGTGCGGTCCGTGGATACAACCAGAGACCGACTGACACGAGTCAGAGGAAACGACGGa                                                                                  <  3:40599/145‑1 (MQ=255)
                                                                            aTTTGTCATCACAATGATGGTACCTTCTTTCAGACACCATTTTTTCAACTCCGTTTTCCACGGACCGCACTCTT‑ATGTCAAGAGTGCGGTCCGTGGATACAACCAGAGACCGACTGACACGAGTCa                                                                                                >  2:746492/1‑126 (MQ=255)
                                                                               tGTCATCACAATGATGGTACCTTCTTTCAGACACCATTTTTTCAACTCCGTTTTCCACGGACCGCACTCttga                                                                                                                                                   <  2:43657/73‑3 (MQ=255)
                                                                               tGTCATCACAATGATGGTACCTTCTTTCAGACACCATTTTTTCAACTCCGTTTTCCACGGACCGCACTCttga                                                                                                                                                   >  1:43657/1‑71 (MQ=255)
                                                                                gTCATCACAATGATGGTACCTTCTTTCAGACACCATTTTTTCAACTCCGTTTTCCACGGACCGCACTCTT‑ATGTCAAGAGTGCGGTCCGTGGATACAACCAGAGACCGACTGACACGAGTCAGAGGAAACGACGGATATGTTCAGTCGTa                                                                    <  4:155729/150‑1 (MQ=255)
                                                                                   atcaCAATGATGGTACCTTCTTTCAGACACCATTTTTTCAACTCCGTTTTCCACGGACCGCACTCTT‑ATGTCAAGAGTGCGGTCCGTGGATACAACCAGAGACCGACTGACACGAGTCAGAGGAAACGACGGATATGTTCAGTCGTaaaa                                                                 >  2:577144/1‑150 (MQ=255)
                                                                                     cacaATGATGGTACCTTCTTTCAGACACCATTTTTTCAACTCCGTTTTCCACGGACCGCACTCTT‑ATGTCAAGAGTGCGGTCCGTGGATACAACCAGAGACCGACTGACACGAGTCagag                                                                                             <  2:409596/120‑1 (MQ=255)
                                                                                     cacaATGATGGTACCTTCTTTCAGACACCATTTTTTCAACTCCGTTTTCCACGGACCGCACTCTT‑ATGTCAAGAGTGCGGTCCGTGGATACAACCAGAGACCGACTGACACGAGTCagag                                                                                             >  1:409596/1‑120 (MQ=255)
                                                                                     cacaATGATGGTACCTTCTTTCAGACACCATTTTTTCAACTCCGTTTTCCACGGACCGCACTCTT‑ATGTCAAGAGTGCGGTCCGTGGATACAACCAGAGACCGACTGACACGAGTCAGAGGAAACGACGGATATGTTCAGTCGTAAAata                                                               >  3:714348/1‑150 (MQ=255)
                                                                                             tgGTACCTTCTTTCAGACACCATTTTTTCAACTCCGTTTTCCACGGACCGCACTCTT‑ATGTCAAGAGTGCGGTCCGTGGATACAACCAGAGACCGACTGacac                                                                                                      <  4:657747/103‑1 (MQ=255)
                                                                                               gTACCTTCTTTCAGACACCATTTTTTCAACTCCGTTTTCCACGGACCGCACTCTT‑ATGTCAAGAGTGCGGTCCGTGGATACAACCAGAGACCGACTGACACGAGTCAGAGGAAACGACGGATATGTTCAGTCGTAAAATATCTATCaaaa                                                     >  1:29795/1‑150 (MQ=255)
                                                                                                tACCTTCTTTCAGACACCATTTTTTCAACTCCGTTTTCCACGGACCGCACTCtt                                                                                                                                                     >  3:484672/1‑54 (MQ=255)
                                                                                                tACCTTCTTTCAGACACCATTTTTTCAACTCCGTTTTCCACGGACCGCACTCtt                                                                                                                                                     <  4:484672/54‑1 (MQ=255)
                                                                                                   cttcttTCAGACACCATTTTTTCAACTCCGTTTTCCACGGACCGCACTCTT‑ATGTCAAGAGTGCGGTCCGTGGATACAACCAGAGACCGACTGACACGAGTCAGAGGAAACGACGGATATGTTCAGTCGTAAAATATCTATCAAAAAACa                                                 >  1:339582/1‑150 (MQ=255)
                                                                                                   cttcttTCAGACACCATTTTTTCAACTCCGTTTTCCACGGACCGCACTCTT‑ATGTCAAGAGTGCGGTCCGTGGATACAACCAGAGACCGACTGACACGAGTCAGAGGAAACGACGGATATGTTCAGTCGTAAAATATCTATCAAAAAACa                                                 >  3:235996/1‑150 (MQ=255)
                                                                                                           aGACACCATTTTTTCAACTCCGTTTTCCACGGACCGCACTCTT‑ATGTCAAGAGTGCGGTCCGTGGATACAACCAGAGACCGACTGACACGAGTCAGAGGAAACGACGGATATGTTCAGTCGTAAAATATCTATCAAAAAACATGATTAAg                                         <  1:250718/150‑1 (MQ=255)
                                                                                                           aGACACCATTTTTTCAACTCCGTTTTCCACGGACCGCACTCTT‑ATGTCAAGAGTGCGGTCCGTGGATACAACCAGAGACCGACTGACACGAGTCAGAGGAAACGACGGATATGTTCAGTCGTAAAATATCTATCAAAAAACATGATTAAg                                         <  2:600432/150‑1 (MQ=255)
                                                                                                               acCATTTTTTCAACTCCGTTTTCCACGGACCGCACTCTT‑ATGTc                                                                                                                                               <  4:236920/44‑1 (MQ=255)
                                                                                                               acCATTTTTTCAACTCCGTTTTCCACGGACCGCACTCTT‑ATGTCAAGAGTGCGGTCCGTGGATACAACCAGAGACCGACTGACACGAGTCAGAGGAAACGACGGATATGTTCAGTCGTAAAATATCTATCAAAAAACATGATTAAGGTCa                                     >  2:922600/1‑150 (MQ=255)
                                                                                                                ccATTTTTTCAACTCCGTTTTCCACGGACCGCACTCTT‑ATGTCAAGAGTGCGGTCCGTGGATACAACCAGAGACCGACTGACACGa                                                                                                    <  3:87292/86‑1 (MQ=255)
                                                                                                                 cATTTTTTCAACTCCGTTTTCCACGGACCGCACTCTT‑ATGTCAAGAGTGCGGTCCGTGGATACAACCAGAGACCGACTGACACGAGTCAGAGGAAACGACGGATATGt                                                                             >  1:711317/1‑108 (MQ=255)
                                                                                                                   ttttttCAACTCCGTTTTCCACGGACCGCACTCTT‑ATGTCAAGAGTGCGGTCCGTGGATACAACCAGAGACCGACTGACACGAGTCAGAGGAAACGACGGATATGtt                                                                            <  2:489381/107‑1 (MQ=255)
                                                                                                                   ttgtttCAACTCCGTTTTCCACGGACCGCACTCTT‑ATGTCAAGAGTGCGGTCCGTGGATACAACCAGAGACCGACTGACACGAGTCAGAGGAAACGACGGATATGTTCAGTCGTAAAATATCTATCAAAAAACATGATTAAGGTCaaaaa                                 <  1:878561/147‑1 (MQ=255)
                                                                                                                    tttttCAACTTCTTTTTCCACGGACCGCACTCTT‑ATGTCAAGAGTGCGGTCCGTGGATACAACCAGAGACCGACTGACACGAGTCAGAGGAAACGACGGATATGTTCAGTCGTAAAATATCTATCAAAAAACATGATTAAGGTCAAAAAt                                >  4:301105/1‑150 (MQ=255)
                                                                                                                     ttttCAACTCCGTTTTCCACGGACCGCACTCTT‑ATGTCAAGAGTGCGGTCCGTGGATACaa                                                                                                                        >  4:584947/1‑61 (MQ=255)
                                                                                                                       ttCAACTCCGTTTTCCACGGACCGCACTCTT‑ATGTCAAGAGTGCGGTCCGTGGATACAACCAGAGACCGACTGACACGAGTCAGAGGAAACGACGGATATGTTCAGTCGTAAAATATCTATCAAAAAACATGATTAAGGTCAAAAATGtt                             <  3:239684/150‑1 (MQ=255)
                                                                                                                        tCAACTCCGTTTTCCACGGACCGCACTCTT‑ATGTCAAGAGTGCGGTCCGTGGATACAACCAGAGACCGACTGACACGAGTCaga                                                                                              <  3:674625/84‑1 (MQ=255)
                                                                                                                        tCAACTCCGTTTTCCACGGACCGCACTCTT‑ATGTCAAGAGTGCGGTCCGTGGATACAACCAGAGACCGACTGACACGAGTCaga                                                                                              >  4:674625/1‑84 (MQ=255)
                                                                                                                          aaCTCCGTTTTCCACGGACCGCACTCTT‑ATGTCAAGAGTGCGGTCCGTGGATACAACCAGAGACCGACTGACACGAGTCAGAGGAAACGACGGATATGTTCAGTCGTAAAATATCTATCAAAAAACATGATTAAGGTCAAAAATGTTTGa                          <  2:339582/150‑1 (MQ=255)
                                                                                                                             tCCGTTTTCCACGGACCGCACTCTT‑ATGTCAAGAGTGCGGTCCGTGGATACAACCAGAGACCGACTGACACGAGTCAGAGGAAACGACGGATATGTTCAGTCGTAAAATATCTATCAAAAAACATGATTAAGGTCAAAAATGTTTGatat                       >  2:148362/1‑150 (MQ=255)
                                                                                                                             tCCGTTTTCCACGGACCGCACTCTT‑ATGTCAAGAGTGCGGTCCGTGGATACAACCAGAGACCGACTGACACGAGTCAGAGGAAACGACGGATATGTTCAGTCGTAAAATATCTATCAAAAAACATGATTAAGGTCAAAAATGTTTGatat                       >  2:1075648/1‑150 (MQ=255)
                                                                                                                             tCCGTTTTCCACGGACCGCACTCTT‑ATGTCAAGAGTGCGGTCCGTGGATACAACCAGAGACCGACTGACACGAGTCAGAGGAAACGACGGATATGTTCAGTCGTAAAATAAATAAAAAAAAACATGATTAAGGTCAAAAATGTTTGatat                       <  2:934946/150‑1 (MQ=255)
                                                                                                                               cGTTTTCCACGGACCGCACTCTT‑ATGTCAAGAGTGCGGTCCGTGGATACAACCAGAGACCGACTGACACGAGTCAGAGGAAACGACGGATATGTTCAGTCGTAAAATATCTATCAAAAAACATGATTAAGGTCAAAAATGTTTGATAttt                     >  3:214137/1‑150 (MQ=255)
                                                                                                                                      cACGGACCGCACTCTT‑ATGTCAAGAGTGCGGTCCGTGGATACAACCAGAGACCGACTGACACGAGTCAGAGGAAACGACGGATATGTTCAGTCGTAAAATATCTATCAAAAAACATGATTAAGGTCAAAAATg                               <  1:884197/133‑1 (MQ=255)
                                                                                                                                      cACGGACCGCACTCTT‑ATGTCAAGAGTGCGGTCCGTGGATACAACCAGAGACCGACTGACACGAGTCAGAGGAAACGACGGATATGTTCAGTCGTAAAATATCTATCAAAAAACATGATTAAGGTCAAAAATg                               >  2:884197/1‑133 (MQ=255)
                                                                                                                                      cACGGACCGCACTCTT‑ATGTCAAGAGTGCGGTCCGTGGATACAACCAGAGACCGACTGACACGAGTCAGAGGAAACGACGGATATGTTCAGTCGTAAAATATCTATCAAAAAACATGATTAAGGTCAAAAATGTTTGATATTTACAAttt              >  3:589823/1‑150 (MQ=255)
                                                                                                                                       aCGGACCGCACTCTT‑ATGTCAAGAGTGCGGTCCGTGGATACAACCAGAGACCGACTGACACGAGTCAGAGGAAACGACGGATATGTTCAGTCGTAAAat                                                                <  3:320932/99‑1 (MQ=255)
                                                                                                                                       aCGGACCGCACTCTT‑ATGTCAAGAGTGCGGTCCGCGGATACAACCAGAGACCGACTGACACGAGTCAGAGGAAACGACGGATATGTTCAGTCGTAAAATATCTATCAAAAAACATGATTAAGGTCAAAAATGTTTGATATTTACAATTTa             <  1:861816/150‑1 (MQ=255)
                                                                                                                                         ggACCGCACTCTT‑ATGTCAAGAGTGCGGTCCGTGGATACAACCAGAGACCGACTGACACGAGTCAGAGGAAACGACGGATATGTTCAGTCGTAAAATATCTATCAAAAAACATGATTAAGGAAAAAAATGTTTGATATTTACAATTTATg           <  2:220405/150‑1 (MQ=255)
                                                                                                                                          gACCGCACTCTT‑ATGTCAAGAGTGCGGTCCGTGGATACAACCAGAGACCGACTGACACGAGTCAGAGGAAACGACGGATATGTTCAGTCGTAAAATATCTATCAAAAAACATGATTAAGGTCAAAAATGTTTGATATTTACAATTTATGa          >  1:119306/1‑150 (MQ=255)
                                                                                                                                           aCCGCACTCTT‑ATGTCAAGAGTGCGGTCCGTGGATACAACCAGAGACCGACTGACACGAGTCAGAGGAAACGACGGATATGTTCAGTCGTAAAATATCTATCAAAAAACATGATTAAGGTCAAAAATGTTTGATATTTACAATTTATGaa         >  4:382744/1‑150 (MQ=255)
                                                                                                                                             cGCACTCTT‑ATGTCAAGAGTGCGGTCCGTGGATACAACCAGAGACCGACTGACACGAGTCAGAGGAAACGACGGATATGTTCAGTCGTAAAATATCTATCAAAAAACATGATTAAGGTCAAAAATGTTTGATATTTACAATTTATGAAGa       <  1:325805/150‑1 (MQ=255)
                                                                                                                                               cACTCTT‑ATGTCAAGAGTGCGGTCCGTGGATACAACCAGAGACCGACTGa                                                                                                         >  2:211360/1‑50 (MQ=255)
                                                                                                                                               cACTCTT‑ATGTCAAGAGTGCGGTCCGTGGATACAACCAGAGACCGACTGa                                                                                                         <  1:211360/50‑1 (MQ=255)
                                                                                                                                               cACTCTT‑ATGTCAAGAGTGCGGTCCGTGGATACAACCAGAGACCGACTGACACGAGTCa                                                                                                <  2:322731/59‑1 (MQ=255)
                                                                                                                                                aCTCTT‑ATGTCAAGAGTGCGGTCCGTGGATACAACCAGAGACCGACTGACACGAGTCAGAGGAAACGACGGATATGTTCAGTCGTAAAATATCTATCAAAAAACATGATTAAGGTCAAAAATGTTTGATATTTACAATTTATGAAGATGa    <  3:705102/150‑1 (MQ=255)
                                                                                                                                                aCTCTT‑ATGTCAAGAGTGCGGTCCGTGGATACAACCAGAGACCGACTGACACGAGTCAGAGGAAACGACGGATATGTTCAGTCGTAAAATATCTATCAAAAAACATGATTAAGGTCAAAAATGTTTGATATTTACAATTTATGAAGATGa    >  1:187750/1‑150 (MQ=255)
                                                                                                                                                  tctT‑ATGTCAAGAGTGCGGTCCGTGGATACAACCAGAGACCGACTGACACGAGTCAGAGGAAACGACGGATATGTTCAGTCGTAAAATATCTATCAAAAAACATGATTAAGGTCAAAAATGTTTGATATTTACAATTTATGAAGATGACa  >  4:189107/1‑150 (MQ=255)
                                                                                                                                                  tctT‑ATGTCAAGAGTGCGGTCCGTGGATACAACCAGAGACCGACTGACACGAGTCAGAGGAAACGACGGATATGTTCAGTCGTAAAATATCTATCAAAAAACATGATTAAGGTCAAAAATGTTTGATATTTACAATTTATGAAGATGACa  <  1:998061/150‑1 (MQ=255)
                                                                                                                                                  tctT‑ATGTCAAGAGTGCGGTCCGTGGATACAACCAGAGACCGACTGACACGAGTCAGAGGAAACGACGGATATGTTCAGTCGTAAAATATCTATCAAAAAACATGATTAAGGTCAAAAATGTTTGATATTTACAATTTATGAAGATGACa  >  1:453217/1‑150 (MQ=255)
                                                                                                                                                     |                                                                                                                                                   
CGGACCTGATACTGATATGAGTCTTACCGCATATACGGTCAATTTCAGCAATTAATTACATTATCCACGCCAAAGTATTTGTCATCACAATGATGGTACCTTCTTTCAGACACCATTTTTTCAACTCCGTTTTCCACGGACCGCACTCTT‑ATGTCAAGAGTGCGGTCCGTGGATACAACCAGAGACCGACTGACACGAGTCAGAGGAAACGACGGATATGTTCAGTCGTAAAATATCTATCAAAAAACATGATTAAGGTCAAAAATGTTTGATATTTACAATTTATGAAGATGACA  >  NC_000913_3_pae_pgi/2068257‑2068552

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.