New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913_3_pae_pgi = 2068406194 (1.920)29 (0.330) 19/226 6.6 15.8% pseudogene (14/159 nt) yoeH pseudogene, CP4‑44 putative prophage remnant;Phage or Prophage Related
?NC_000913_3_pae_pgi = 2068411 143 (1.640)pseudogene (9/159 nt) yoeH pseudogene, CP4‑44 putative prophage remnant;Phage or Prophage Related
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

Only 100 of 197 total aligned reads displayed.

CTGATACTGATATGAGTCTTACCGCATATACGGTCAATTTCAGCAATTAATTACATTATCCACGCCAAAGTATTTGTCATCACAATGATGGTACCTTCTTTCAGACACCATTTTTTCAACTCCGTTTTCCACGGACCGCACTCTT‑ATGTCAAGAGTGCGGTCCGTGGATACAACCAGAGACCGACTGACACGAGTCAGAGGAAACGACGGATATGTTCAGTCGTAAAATATCTATCAAAAAACATGATTAAGGTCAAAAATGTTTGATATTTACAATTTATGAAGATGACAATAATTAT  >  NC_000913_3_pae_pgi/2068262‑2068560
                                                                                                                                                      |                                                                                                                                                     
ctgatactgataTGAGTCTTACCGCATATACGGTCAATTTCAGCAATTAATTACATTATCCACGCCAAAGTATTTGTCATCACAATGATGGTACCTTCTTTCAGACACCATTTTTTCAACTCCGTTTTCCACGGACCGCACTCTT‑ATGTc                                                                                                                                                       <  1:777710/150‑1 (MQ=255)
  gatactgataTGAGTCTTACCGCATATACGGTCAATTTCAGCAATTAATTACATTATCCACGCCAAAGTATTTGTCATCACAATGATGGTACCTTCTTTCAGACACCATTTTTTCAACTCCGTTTTCCACGGACCGCACTCTT‑ATGTCaa                                                                                                                                                     <  2:1000896/150‑1 (MQ=255)
   atactgctaTGAGTCTTACCGCATATACGGCCAATTTCAGCAATCAATTACATTATCCACGCAAAAGTATTTGTCATCACAATGATGGTACCTTCTTTCAGACCTCATTTTTTCAACTCCGTTTTACACTGACCGCACTCTT‑ATGTCacg                                                                                                                                                    >  2:625977/1‑148 (MQ=255)
   atactgataTGAGTCTTACCGCATATACGGTCAATTTCAGCAATTAATTACATTATCCTCGTCTAAGTATTTGTCATCACAATGATGGTACCTTCTTTCAGACACCATTTTTTCAACTCCGTTTTCCACGGACCGCACTCTT‑ATGTCAag                                                                                                                                                    <  2:549604/150‑1 (MQ=255)
   atactgataTGAGTCTTACCGCATATACGGTCAATTTCAGCAATTAATTACATTATCCACGCCAAAGTATTTGTCATCACAATGATGGTACCTTCTTTCAGACACCATTTTTTCAACTCCGTTTTCCACGGACCGCACTCTT‑ATGTCAag                                                                                                                                                    >  3:507257/1‑150 (MQ=255)
    tactgataTGAGTCTTACCGCATATACGGTCAATTTCAGCAATTAATTACATTATCCACGCCAAAGTATTTGTCATCACAATGATGGTACCTTCTTTCAGACACCATTTTTTCAACTCCGTTTTCCACGGACCGCACTCTT‑ATGTCAaga                                                                                                                                                   <  3:500464/150‑1 (MQ=255)
         atatGAGTCTTACCGCATATACGGTCAATTTCAGCAATTAATTACATTATCCACGCCAAAGTATTTGTCATCACAATGATGGTACCTTCTTTCAGACACCATTTTTTCAACTCCGTTTTCCACGGACCGCACTCTT‑ATGTCAAGAGTGCg                                                                                                                                              >  1:92752/1‑150 (MQ=255)
           atGAGTCTTACCGCATATACGGTCAATTTCAGCAATTAATTACATTATCCACGCCAAAGTATTTGTCATCACAATGATGGTACCTTCTTTCAGACACCATTTTTTCAGCTCCGTTTTCCACGGACCGCACTCTT‑ATGTCAAGAGTGCGGt                                                                                                                                            <  4:66607/150‑1 (MQ=255)
            tGAGTCTTACCGCATATACGGTCAATTTCAGCAATTAATTACATTATCCACGCCAAAGTATTTGTCATCACAATGATGGTACCTTCTTTCAGACACCATTTTTTCAACTCCGTTTTCCACGGACCGCACTCTT‑ATGTCAAGAGTGCGGTc                                                                                                                                           >  2:175341/1‑150 (MQ=255)
            tGAGTCTTACCGCATATACGGTCAATGTCAGCAATTAATTACATTATCCACGCCAAAGTATTTGTCATCACAATGATGGTACCTTCTTTCAGACACCATTTTTTCAACTCCGTTTTCCACGGACCGCCCTCTT‑ATGTCAAGAGTGCGGTc                                                                                                                                           <  2:33184/150‑1 (MQ=255)
             gAGTCTTACCGCATATACGGTCAATTTCAGCAATTAATTACATTATCCACGCCAAAGTATTTGTCATCACAATGATGGTACCTTCTTTCAGACACCATTTTTTCAACTCCGTTTTCCACGGACCGCACTCTT‑ATGTCAAGAGTGCGGTcc                                                                                                                                          <  2:602060/150‑1 (MQ=255)
             gAGTCTTACCGCATATACGGTCAATTTCAGCAATTAATTACATTATCCACGCCAAAGTATTTGTCATCACAATGATGGTACCTTCTTTCAGACACCATTTTTTCAACTCCGTTTTCCACGGACCGCACTCTT‑ATGTCAAGAGTGCGGTcc                                                                                                                                          >  1:602060/1‑150 (MQ=255)
              aGTCTTACCGCATATACGGTCAATTTCAGCAATTAATTACATTATCCACGCCAAAGTATTTGTCATCACAATGATGGTACCTTCTTTCAGACACCATTTTTTCAACTCCGTTTTCCACGGACCGCACTCTT‑ATGTCAAGAGTGCGGTCCg                                                                                                                                         >  1:973076/1‑150 (MQ=255)
               gTCTTACCGCATATACGGTCAATTTCAGCAATTAATTACATTATCCACGCCAAAGTATTTGTCATCACAATGATGGTACCTTCTTTCAGACACCATTTTTTCAACTCCGTTTTCCACGGACCGCACTCTT‑ATGTCAAGAGTGCGGTCCGt                                                                                                                                        <  4:581747/150‑1 (MQ=255)
               gTCTTACCGCATATACGGTCAATTTCAGCAATTAATTACATTATCCACGCCAAAGTATTTGTCATCACAATGATGGTACCTTCTTTCAGACACCATTTTTTCAACTCCGTTTTCCACGGACCGCACTCTT‑ATGTCAAGAGTGCGGTCCGt                                                                                                                                        <  1:843431/150‑1 (MQ=255)
                tCTTACCGCATATACGGTCAATTTCAGCAATTAATTACATTATCCACGCCAAAGTATTTGTCATCACAATGATGGTACCTTCTTTCAGACACCATTTTTTCAACTCCGTTTTCCACGGACCGCACTCTT‑ATGTCAAGAGTGCGGTCCGTg                                                                                                                                       <  4:62102/150‑1 (MQ=255)
                      cGCATATACGGTCAATTTCAGCAATTAATTACATTATCCACGCCAAAGTATTTGTCATCACAATGATGGTACCTTCTTTCAGACACCATTTTTTCAACTCCGTTTTCCACGGACCGCACTCTT‑ATGTCAAGAGTGCGGTCCGTGGATACa                                                                                                                                 >  2:998061/1‑150 (MQ=255)
                        cATATACGGTCAATTTCAGCAATTAATTACATTATCCACGCCAAAGTATTTGTCATCACAATGATGGTACCTTCTTTCAGACACCATTTTTTCAACTCCGTTTTCCACGGACCGCACTCTT‑ATGTCAAGAGTGCGGTCCGTGGATACaaa                                                                                                                               <  1:42823/150‑2 (MQ=255)
                         atatACGGTCAATTTCAGCAATTAATTACATTATCCACGCCAAAGTATTTGTCATCACAATGATGGTACCTTCTTTCAGACACCATTTTTTCAACTCCGTTTTCCACGGACCGCACTCTT‑ATGTCAAGAGTGCGGTcc                                                                                                                                          >  3:155940/1‑138 (MQ=255)
                             aCGGTCAATTTCAGCAATTAATTACATTATCCACGCCAAAGTATTTGTCATCACAATGATGGTACCTTCTTTCAGACACCATTTTTTCAACTCCGTTTTCCACGGACCGCACTCTT‑ATGTCAAGAGTGCGGTCCGTGGATACAAc                                                                                                                               <  1:1112858/145‑1 (MQ=255)
                             aCGGTCAATTTCAGCAATTAATTACATTATCCACGCCAAAGTATTTGTCATCACAATGATGGTACCTTCTTTCAGACACCATTTTTTCAACTCCGTTTTCCACGGACCGCACTCTT‑ATGTCAAGAGTGCGGTCCGTGGATACAAc                                                                                                                               >  2:1112858/1‑145 (MQ=255)
                             aCGGTCAATTTCAGCAATTAATTACATTATCCACGCCAAAGTATTTGTCATCACAATGATGGTACCTTCTTTCAGACACCATTTTTTCAACCCCGTTTTCCACGGACCGCACTCTT‑ATGTCAAGAGTGCGGTCCGTGGCTACAACCagag                                                                                                                          >  3:328778/1‑150 (MQ=255)
                               ggTCAATTTCAGCAATTAATTACATTATCCACGCCAAAGTATTTGTCATCACAATGATGGTACCTTCTTTCAGACACCATTTTTTCAACTCCGTTTTCCACGGACCGCACTCTT‑ATGTCAAGAGTGCGGTCCGTGGATACAACCAGAGAc                                                                                                                        >  3:159913/1‑150 (MQ=255)
                                gTCAATTTCAGCAATTAATTACATTATCCACGCCAAAGTATTTGTCATCACAATGATGGTACCTTCTTTCAGACACCATTTTTTCAACTCCGTTTTCCACGGACCGCACTCTT‑ATGTCAAGAGTGCGGTCCGTGGATACAACCAGAGAcc                                                                                                                       >  1:1011765/1‑150 (MQ=255)
                                      ttCAGCAATTAATTACATTATCCACGCCAAAGTATTTGTCATCACAATGATGGTACCTTCTTTCAGACACCATTTTTTCAACTCCGTTTTCCACGGACCGCACTCTT‑ATGTCAAGAGTGCGGTCCGTGGATACAACCAGAGACCGACTGa                                                                                                                 <  1:884028/150‑1 (MQ=255)
                                         aGCAATTAATTACATTATCCACGCCAAAGTATTTGTCATCACAATGATGGTACCTTCTTTCAGACACCATTTTTTCAACTCCGTTTTCCACGGACCGCACTCTT‑ATGTCAAGAGTGCg                                                                                                                                              >  3:406469/1‑118 (MQ=255)
                                         aGCAATTAATTACATTATCCACGCCAAAGTATTTGTCATCACAATGATGGTACCTTCTTTCAGACACCATTTTTTCAACTCCGTTTTCCACGGACCGCACTCTT‑ATGTCAAGAGTGCg                                                                                                                                              <  4:406469/118‑1 (MQ=255)
                                         aGCAATTAATTACATTATCCACGCCAAAGTATTTGTCATCACAATGATGGTACCTTCTTTCAGACACCATTTTTTCAACTCCGTTTTCCACGGACCGCACTCTT‑ATGTCAAGAGTGCGGTCCGTGGATACAACCAGAGACCGACTGacac                                                                                                              <  2:973076/150‑1 (MQ=255)
                                           cAATTAATTACATTATCCACGCCAAAGTATTTGTCATCACAATGATGGTACCTTCTTTCAGACACCATTTTTTCAACTCCGTTTTCCACGGACCGCACTCTT‑ATGTCAAGAGTGCGGTCCGTGGATACAACCAGAGACCGACTGACACGa                                                                                                            >  4:170009/1‑150 (MQ=255)
                                             attaattaCATTATCCACGCCAAAGTATTTGTCATCACAATGATGGTACCTTCTTTCAGACACCATTTTTTCAACTCCGTTTTCCACGGACCGCACTCTT‑ATGTCAAGAGTGc                                                                                                                                               >  2:631113/1‑113 (MQ=255)
                                              ttaattaCATTATCCACGCCAAAGTATTTGTCATCACAATGATGGTACCTTCTTTCAGACACCATTTTTTCAACTCCGTTTTCCACGGACCGCACTCTT‑ATGTCAAGAGTGCGGTCCGTGGATACAACCAGAGACCGACTGACACGAGTc                                                                                                         <  1:713350/150‑1 (MQ=255)
                                               taattaCATTATCCACGCCAAAGTATTTGTCATCACAATGATGGTACCTTCTTTCAGACACCATTTTTTCAACTCCGTTTTCCACGGACCGCACTCTT‑ATGTCAAGAGTGCGGTCCGTGGATACAACCAGAGACCGACTTACACGAGTCa                                                                                                        <  3:572514/150‑1 (MQ=255)
                                                aattaCATTATCCACGCCAAAGTATTTGTCATCACAATGATGGTACCTTCTTTCAGACACCATTTTTTCAACTCCGTTTTCCACGGACCGCACTCTT‑ATGTCAAGAGTGCGGTCCGTGGATACAACCAGAGACCGACTGACACGAGTCag                                                                                                       <  1:68841/150‑1 (MQ=255)
                                                 attaCATTATCCACGCCAAAGTATTTGTCATCACAATGATGGTACCTTCTTTCAGACACCATTTTTTCAACTCCGTTTTCCACGGACCGCACTCTT‑ATGTCAAGAGTGCGGTCCGt                                                                                                                                        <  1:62902/116‑1 (MQ=255)
                                                  ttaCATTGTCCACGCCAAAGTATTTGTCATCACAATGATGGTACCTTCTTTCAGACACCATTTTTTCAACTCCGTTTTCCACGGACCGCACTCTT‑ATGTCAAGAGTGCGGTCCGTg                                                                                                                                       <  4:158228/116‑1 (MQ=255)
                                                  ttaCATTATCCACGCCAAAGTATTTGTCATCACAATGATGGTACCTTCTTTCAGACACCATTTTTTCAACTCCGTTTTCCACGGACCGCACTCTT‑ATGTCAAGAGTGCGGTCCGTGGATACAACCAGAGACCGACTGACACGAGTCagag                                                                                                     >  4:705102/1‑150 (MQ=255)
                                                  ttaCATTATCCACGCCAAAGTATTTGTCATCACAATGATGGTACCTTCTTTCAGACACCATTTTTTCAACTCCGTTTTCCACGGACCGCACCCTT‑ATGTCa                                                                                                                                                      <  3:464299/101‑1 (MQ=255)
                                                  ttaCATTATCCACGCCAAAGTATTTGTCATCACAATGATGGTACCTTCTTTCAGACACCATTTTTTCAACTCCGTTTTCCACGGACCGCACCCTT‑ATGTCa                                                                                                                                                      >  4:464299/1‑101 (MQ=255)
                                                     cATTATCCACGCCAAAGTATTTGTCATCACAATGATGGTACCTTCTTTCAGACACCATTTTTTCAACTCCGTTATCCACGGACCGCACTCTTGACAT‑AAGAGTGCGGTCCGTg                                                                                                                                       >  3:34721/1‑113 (MQ=25)
                                                       ttATCCACGCCAAAGTATTTGTCATCACAATGATGGTACCTTCTTTCAGACACCATTTTTTCAACTCCGTTTTCCACGGACCGCACTCTT‑ATGTCAAGAGTGCGGTCCGTGGATACAACCAGAGACCGACTGACACGAGTCAGAGGAAac                                                                                                <  4:110227/150‑1 (MQ=255)
                                                          tCCACGCCAAAGTATTTGTCATCACAATGATGGTACCTTCTTTCAGACACCATTTTTTCAACTCCGTTTTCCACGGACCGCACTCTT‑ATGTCAAGAGTGCGGTCCGTGGATACAACCAGAGACCGACTGACACGAGTCAGAGGAAacgac                                                                                             >  4:442783/1‑150 (MQ=255)
                                                            cACGCCAAAGTATTTGTCATCACAATGATGGTACCTTCTTTCAGACACCATTTTTTCAACTCCGTTTTCCACGGACCGCACTCTT‑ATGTCAAGAGTGCGGTCCGt                                                                                                                                        <  2:470581/105‑1 (MQ=255)
                                                            cACGCCAAAGTATTTGTCATCACAATGATGGTACCTTCTTTCAGACACCATTTTTTCAACTCCGTTTTCCACGGACCGCACTCTT‑ATGTCAAGAGTGCGGTCCGt                                                                                                                                        >  1:470581/1‑105 (MQ=255)
                                                            cACGCCAAAGTATTTGTCATCACAATGATGGTACCTTCTTTCAGACACCATTTTTTCAACTCCGTTTTCCACGGACCGCACTCTT‑ATGTCAAGAGTGCGGTCCGTGGATACAACCAGAGACCGACTGACACGAGTCAGAGGAAACGACgg                                                                                           <  3:497229/150‑1 (MQ=255)
                                                              cGCCAAAGTATTCGCCATCACAATGATGGTACCTTCTTTCAGACACCATTTTTTCAACTCCGTTTTCCACGGACCGCACTCTT‑ATGTCAAGAGTGCGGTCCGTGGATACAACCAGAGACCGACTGACACGAGTCAGAGGAAACGACGGat                                                                                         <  1:594253/150‑1 (MQ=255)
                                                               gCCAAAGTATTTGTCATCACAATGATGGTACCTTCTTTCAGACACCATTTTTTCAACTCCGTTTTCCACGGACCGCACTCTT‑ATGTCAAGAGTGCGGTCCGTGGATACAACCAGAGACCGACTGACACGAGTCAGAGGAAACGACGGata                                                                                        <  2:735213/150‑1 (MQ=255)
                                                                 cAAAGTATTTGTCATCACAATGATGGTACCTTCTTTCAGACACCATTTTTTCAACTCCGTTTTCCACGGACCGCACTCTT‑ATGTCAAGAGTGCg                                                                                                                                              >  3:422534/1‑94 (MQ=255)
                                                                 cAAAGTATTTGTCATCACAATGATGGTACCTTCTTTCAGACACCATTTTTTCAACTCCGTTTTCCACGGACCGCACTCTT‑ATGTCAAGAGTGCg                                                                                                                                              <  4:422534/94‑1 (MQ=255)
                                                                 cAAAGTATTTGTCATCACAATGATGGTACCTTCTTTCAGACACCATTTTTTCAACTCCGTTTTCCACGGACCGCACTCTT‑ATGTCAAGAGTGCGGTCCGTGGATACAACCAGAGACCGACTGACACGAGTCAGAGGAAACGACGGATATg                                                                                      >  2:243856/1‑150 (MQ=255)
                                                                 cAAAGTATTTGTCATCACAATGATGGTACCTTCTTTCAGACACCATTTTTTCAACTCCGTTTTCCACGGACCGCACTCTT‑ATGTCAAGAGTGCGGTCCGTGGATACAACCAGAGACCGACTGACACGAGTCAGAGGAAACGACGGATATg                                                                                      >  1:220405/1‑150 (MQ=255)
                                                                  aaaGTATTTGTCATCACAATGATGGTACCTTCTTTCAGACACCATTTTTTCAACTCCGTTTTCCACGGACCGCACTCTT‑ATGTCAAGAGTGCGGTCCGTGGATACAACCAGAGACCGACTGACACGAGTCAGAGGAAACGACGGATATGt                                                                                     >  1:633798/1‑150 (MQ=255)
                                                                      tATTTGTCATCACAATGATGGTACCTTCTTTCAGACACCATTTTTTCAACCCCGTTTTCCACGGCCCGCACTCTT‑ATGTCAAGAGTGCGGTCCGTGGATACAACCAGAGACCGACTGACACGAGTCAGAGGAAACGACGGATATGTTCAg                                                                                 <  1:353856/150‑1 (MQ=255)
                                                                       aTTTGTCATCACAATGATGGTACCTTCTTTCAGACACCATTTTTTCAACTCCGTTTTCCACGGACCGCACTCTT‑ATGTCAAGAGTGCGGTCCGTGGATACAACCAGAGACCGACTGACACGAGTCa                                                                                                        <  1:746492/126‑1 (MQ=255)
                                                                           gTCATCACAATGATGGTACCTTCTTTCAGACACCATTTTTTCAACTCCGTTTTCCACGGACCGCACTCTT‑ATGTCAAGAGTGCGGTCCGTGGATACAACCAGAGACCGACTGACACGAGTCAGAGGAAACGACGGATATGTTCAGTCGTa                                                                            <  4:155729/150‑1 (MQ=255)
                                                                                cacaATGATGGTACCTTCTTTCAGACACCATTTTTTCAACTCCGTTTTCCACGGACCGCACTCTT‑ATGTCAAGAGTGCGGTCCGTGGATACAACCAGAGACCGACTGACACGAGTCagag                                                                                                     <  2:409596/120‑1 (MQ=255)
                                                                                cacaATGATGGTACCTTCTTTCAGACACCATTTTTTCAACTCCGTTTTCCACGGACCGCACTCTT‑ATGTCAAGAGTGCGGTCCGTGGATACAACCAGAGACCGACTGACACGAGTCAGAGGAAACGACGGATATGTTCAGTCGTAAAata                                                                       >  3:714348/1‑150 (MQ=255)
                                                                                       atgGTACCTTCTTTCAGACACCATTTTTTCAACTCCGTTTTCCACGGACCGCACTCTT‑ATGTCAAGAGTGCGGTCCGTGGATACAACCAGAGACCGACTGACACGAGTCAGAGGAAACGACGGATATGTTCAGTCGTAAAATATCTATCa                                                                >  2:861816/1‑150 (MQ=255)
                                                                                        tgGTACCTTCTTTCAGACACCATTTTTTTAACTTCGTTTTCCACGGACCGCACTCTT‑ATGTCAAGAGTGCGGTCCGTGGATACAACCAGAGACCGACTGACACGAGTCAGAGGAAACGACGGATATGTTCAGTCGTAAAATATCTATCaa                                                               >  2:58327/1‑150 (MQ=255)
                                                                                          gTACCTTCTTTCAGACACCATTTTTTCAACTCCGTTTTCCACGGACCGCACTCTT‑ATGTCAAGAGTGCGGTCCGTGGATACAACCAGAGACCGACTGACACGAGTCAGAGGAAACGACGGATATGTTCAGTCGTAAAATATCTATCaaaa                                                             >  1:29795/1‑150 (MQ=255)
                                                                                              cttcttTCAGACACCATTTTTTCAACTCCGTTTTCCACGGACCGCACTCTT‑ATGTCAAGAGTGCGGTCCGTGGATACAACCAGAGACCGACTGACACGAGTCAGAGGAAACGACGGATATGTTCAGTCGTAAAATATCTATCAAAAAACa                                                         >  1:339582/1‑150 (MQ=255)
                                                                                              cttcttTCAGACACCATTTTTTCAACTCCGTTTTCCACGGACCGCACTCTT‑ATGTCAAGAGTGCGGTCCGTGGATACAACCAGAGACCGACTGACACGAGTCAGAGGAAACGACGGATATGTTCAGTCGTAAAATATCTATCAAAAAACa                                                         >  3:235996/1‑150 (MQ=255)
                                                                                                    tCAGACACCATTTTTTCAACTCCGTTTTCCACGGACCGCACTCTT‑ATGTCAAGAGTGCGGTCCGTGGATACAACCAGAGACCGACTGACACGAGTCAGAGGAAACGACGGATATGTTCAGTCGTAAAATATCTATCAAAAAACATGATTa                                                   >  4:485737/1‑150 (MQ=255)
                                                                                                      aGACACCATTTTTTCAACTCCGTTTTCCACGGACCGCACTCTT‑ATGTCAAGAGTGCGGTCCGTGGATACAACCAGAGACCGACTGACACGAGTCAGAGGAAACGACGGATATGTTCAGTCGTAAAATATCTATCAAAAAACATGATTAAg                                                 <  1:250718/150‑1 (MQ=255)
                                                                                                      aGACACCATTTTTTCAACTCCGTTTTCCACGGACCGCACTCTT‑ATGTCAAGAGTGCGGTCCGTGGATACAACCAGAGACCGACTGACACGAGTCAGAGGAAACGACGGATATGTTCAGTCGTAAAATATCTATCAAAAAACATGATTAAg                                                 <  4:22352/150‑1 (MQ=255)
                                                                                                       gACACCATTTTTTCAACTCCGTTTTCCACGGACCGCACTCTT‑ATGTCAAGAGTGCGGTCCGTGGATACAACCAGAGACCGACTGACACGAGTCAGAGGAAacgacg                                                                                            <  1:990233/106‑1 (MQ=255)
                                                                                                         cacCATTTTTTCAACTCCGTTTTCCACGGACCGCACTCTT‑ATGTCAAGAGTGCGGTCCGTGGATACAACCAGAGACCGACTGACACGAGTCAGAGGAAACGACGGATATGTTCAGTCGTAAAATATCTATCAAAAAACATGATTAAGGTc                                              <  4:718104/150‑1 (MQ=255)
                                                                                                          acCATTTTTTCAACTCCGTTTTCCACGGACCGCACTCTT‑ATGTCAAGAGTGCGGTCCGTGGATACAACCAGAGACCGACTGACACGAGTCAGAGGAAACGACGGATATGTTCAGTCGTAAAATATCTATCAAAAAACATGATTAAGGTCa                                             >  2:922600/1‑150 (MQ=255)
                                                                                                           ccATTTTTTCAACTCCGTTTTCCACGGACCGCACTCTT‑ATGTCAAGAGTGCGGTCCGTGGATACAACCAGAGACCGACTGACACGa                                                                                                            <  3:87292/86‑1 (MQ=255)
                                                                                                           ccATTTTTTCAACTCCGTTTTCCACGGACCGCACTCTT‑ATGTCAAGAGTGCGGTCCGTGGATACAACCAGAGACCGACTGACACGa                                                                                                            >  4:87292/1‑86 (MQ=255)
                                                                                                            cATTTTTTCAACTCCGTTTTCCACGGACCGCACTCTT‑ATGTCAAGAGTGCGGTCCGTGGATACAACCAGAGACCGACTGACACGAGTCAGAGGAAACGACGGATATGt                                                                                     <  2:711317/108‑1 (MQ=255)
                                                                                                            cATTTTTTCAACTCCGTTTTCCACGGACCGCACTCTT‑ATGTCAAGAGTGCGGTCCGTGGATACAACCAGAGACCGACTGACACGAGTCAGAGGAAACGACGGATATGTTCAGTCGTAAAATATCTATCAAAAAACATGATTAAGGTCaaa                                           >  1:773648/1‑150 (MQ=255)
                                                                                                                  ttCAACTCCGTTTTCCACGGCCCGCACTCTT‑ATGTCAAGAGCGCGGTCCGTGGTTACAACCAGAGACCGACTGACACGAGTCAGAGCAAACGACGGATATGTTCAGTCCTAAAAAATCTCTCAAAAAACAAGATTAAGGTCAAAAATGtt                                     >  2:1087339/1‑150 (MQ=255)
                                                                                                                  ttCAACTCCGTTTTCCACGGACCGCACTCTT‑ATGTCAAGAGTGCGGTCCGTGGATACAACCAGAGACCGACTGACACGAGTCAGAGGAAACGACGGATATGTTCAGTCGTAAAATATCTATCAAAAAACATGATTAAGGTCAAAAATGtt                                     <  3:239684/150‑1 (MQ=255)
                                                                                                                   tCAACTCCGTTTTCCACGGACCGCACTCTT‑ATGTCAAGAGTGCGGTCCGTGGATACAACCAGAGACCGACTGACACGAGTCaga                                                                                                      <  3:674625/84‑1 (MQ=255)
                                                                                                                        tCCGTTTTCCACGGACCGCACTCTT‑ATGTCAAGAGTGCGGTCCGTGGATACAACCAGAGACCGACTGACACGAGTCAGAGGAAACGACGGATATGTTCAGTCGTAAAATATCTATCAAAAAACATGATTAAGGTCAAAAATGTTTGatat                               >  1:872675/1‑150 (MQ=255)
                                                                                                                        tCCGTTTTCCACGGACCGCACTCTT‑ATGTCAAGAGTGCGGTCCGTGGATACAACCAGAGACCGACTGACACGAGTCAGAGGAAACGACGGATATGTTCAGTCGTAAAATATCTATCAAAAAACATGATTAAGGTCAAAAATGTTTGatat                               >  2:148362/1‑150 (MQ=255)
                                                                                                                        tCCGTTTTCCACGGACCGCACTCTT‑ATGTCAAGAGTGCGGTCCGTGGATACAACCAGAGACCGACTGACACGAGTCAGAGGAAACGACGGATATGTTCAGTCGTAAAATAAATAAAAAAAAACATGATTAAGGTCAAAAATGTTTGatat                               <  2:934946/150‑1 (MQ=255)
                                                                                                                         gttgtatCCACGGACCGCACTCTT‑ATGTCAAGAGTGCGGTCCGTGGATACAACCAGAGACCGACTGACACGAGTCAGAGGAAACGACGGATATGTTCAGTCGTAAAATATATATCAAAAAACATGATTAAGGTCAAAAATGTTTGATAtt                              >  2:370671/7‑150 (MQ=255)
                                                                                                                          cGTTTTCCACGGACCGCACTCTT‑ATGTCAAGAGTGCGGTCCGTGGATACAACCAGAGACCGACTGACACGAGTCAGAGGAAACGACGGATATGTTCAGTCGTAAAATATCTATCAAAAAACATGATTAAGGTCAAAAATGTTTGATAttt                             >  3:214137/1‑150 (MQ=255)
                                                                                                                                 cACGGACCGCACTCTT‑ATGTCAAGAGTGCGGTCCGTGGATACAACCAGAGACCGACTGACACGAGTCAGAGGAAACGACGGATATGTTCAGTCGTAAAATATCTATCAAAAAACATGATTAAGGTCAAAAATGTTTGATATTTACAAttt                      >  3:589823/1‑150 (MQ=255)
                                                                                                                                  aCGGACCGCACTCTT‑ATGTCAAGAGTGCGGTCCGTGGATACAACCAGAGACCGACTGACACGAGTCAGAGGAAACGACGGATATGTTCAGTCGTAAAat                                                                        >  4:320932/1‑99 (MQ=255)
                                                                                                                                  aCGGACCGCACTCTT‑ATGTCAAGAGTGCGGTCCGTGGATACAACCAGAGACCGACTGACACGAGTCAGAGGAAACGACGGATATGTTCAGTCGTAAAat                                                                        <  3:320932/99‑1 (MQ=255)
                                                                                                                                  aCGGACCGCACTCTT‑ATGTCAAGAGTGCGGTCCGTGGATACAACCAGAGACCGACTGACACGAGTCAGAGGAAACGACGGATATGTTCAGTCGTAAAATATCTATCAAAAAACATGATTAAGGTCAAAAATGTTTGATATTTACAATTTa                     >  4:258036/1‑150 (MQ=255)
                                                                                                                                    ggACCGCACTCTT‑ATGTCAAGAGTGCGGTCCGTGGATACAACCAGAGACCGACTGACACGAGTCAGAGGAAACGACGGATATGTTCAGTCGTAAAATATCTATCAAAAAACATGATTAAGGAAAAAAATGTTTGATATTTACAATTTATg                   <  2:220405/150‑1 (MQ=255)
                                                                                                                                     gACCGCACTCTT‑ATGTCAAGAGTGCGGTCCGTGGATACAACCAGAGACCGACTGACACGAGTCAGAGGAAACGACGGATATGTTCAGTCGTAAAATATCTATCAAAAAACATGATTAAGGTCAAAAATGTTTGATATTTACAATTTATGa                  <  1:941204/150‑1 (MQ=255)
                                                                                                                                     gACCGCACTCTT‑ATGTCAAGAGTGCGGTCCGTGGATACAACCAGAGACCGACTGACACGAGTCAGAGGAAACGACGGATATGTTCAGTCGTAAAATATCTATCAAAAAACATGATTAAGGTCAAAAATGTTTGATATTTACAATTTATGa                  >  1:119306/1‑150 (MQ=255)
                                                                                                                                      aCCGCACTCTT‑ATGTCAAGAGTGCGGTCCGTGGATACAACCAGAGACCGACTGACACGAGTCAGAGGAAACGACGGATATGTTCAGTCGTAAAATATCTATCAAAAAACATGATTAAGGTCAAAAATGTTTGATATTTACAATTTATGaa                 >  4:382744/1‑150 (MQ=255)
                                                                                                                                        cGCACTCTT‑ATGTCAAGAGTGCGGTCCGTGGATACAACCAGAGACCGACTGACACGAGTCAGAGGAAACGACGGATATGTTCAGTCGTAAAATATCTATCAAAAAACATGATTAAGGTCAAAAATGTTTGATATTTACAATTTATGAAGa               <  1:325805/150‑1 (MQ=255)
                                                                                                                                          cACTCTT‑ATGTCAAGAGTGCGGTCCGTGGATACAACCAGAGACCGACTGa                                                                                                                 <  1:211360/50‑1 (MQ=255)
                                                                                                                                          cACTCTT‑ATGTCAAGAGTGCGGTCCGTGGATACAACCAGAGACCGACTGa                                                                                                                 >  2:211360/1‑50 (MQ=255)
                                                                                                                                           aCTCTT‑ATGTCAAGAGTGCGGTCCGTGGATACAACCAGAGACCGACTGACACGAGTCAGAGGAAACGACGGATATGTTCAGTCGTAAAATATCTATCAAAAAACATGATTAAGGTCAAAAATGTTTGATATTTACAATTTATGAAGATGa            <  2:761592/150‑1 (MQ=255)
                                                                                                                                           aCTCTT‑ATGTCAAGAGTGCGGTCCGTGGATACAACCAGAGACCGACTGACACGAGTCAGAGGAAACGACGGATATGTTCAGTCGTAAAATATCTATCAAAAAACATGATTAAGGTCAAAAATGTTTGATATTTACAATTTATGAAGATGa            <  3:705102/150‑1 (MQ=255)
                                                                                                                                           aCTCTT‑ATGTCAAGAGTGCGGTCCGTGGATACAACCAGAGACCGACTGACACGAGTCAGAGGAAACGACGGATATGTTCAGTCGTAAAATATCTATCAAAAAACATGATTAAGGTCAAAAATGTTTGATATTTACAATTTATGAAGATGa            >  1:187750/1‑150 (MQ=255)
                                                                                                                                             tctT‑ATGTCAAGAGTGCGGTCCGTGGATACAACCAGAGACCGACTGACACGAGTCAGAGGAAACGACGGATATGTTCAGTCGTAAAATATCTATCAAAAAACATGATTAAGGTCAAAAATGTTTGATATTTACAATTTATGAAGATGACa          >  1:453217/1‑150 (MQ=255)
                                                                                                                                             cctT‑ATGTCAAGAGTGCGGTCCGTGGATACAACCAGAGACCGACTGACACGAGTCAGAGGAAACGACGGATATGTTCAGTCGTAAAATATCTATCAAAAAACATGATTAAGGTCAAAAATGTTTGATATTTACAATTTATGAAGATGACa          >  2:1187140/2‑150 (MQ=255)
                                                                                                                                                  aTGTCAAGAGTGCGGTCCGTGGATACAACCAGAGACCGACTGACACGAGTCAGAGGAAACGACGGATATGTTCAGTCGTAAAATATCTATCAAAAAACATGATTAAGGTCAAAAATGTTTGATATTTACAATTTATGAAGATGACaataa      <  2:29795/150‑1 (MQ=255)
                                                                                                                                                  aTGTCAAGAGTGCGGTCCGTGGATACAACCAGAGACCGACTGACACGAGTCAGAGGAAACGACGGATATGTTCAGTCGTAAAATATCTATCAAAAAACATGATTAAGGTCAAAAATGTTTGATATTTACAATTTATGAAGATGACaataa      >  2:442534/1‑150 (MQ=255)
                                                                                                                                                     tCAAGAGTGCGGTCCGTGGATACAACCAGAGACCGACTGACACGAGTCAGAGGAAACGACGGATATGTTCAGTCGTAAAATATCTATCAAAAAACATGATTAAGGTCAAAAATGTTTGATATTTACAATTTATGAAGATGACAATAATta   >  4:353049/1‑150 (MQ=255)
                                                                                                                                                      cAAGAGTGCGGTCCGTGGATACAACCAGAGACCGACTGACACGAGTCAGAGGAAACGACGGATATGTTCAGTc                                                                               >  1:513126/1‑73 (MQ=255)
                                                                                                                                                      cAAGAGTGCGGTCCGTGGATACAACCAGAGACCGACTGACACGAGTCAGAGGAAACGACGGATATGTTCAGTc                                                                               <  2:513126/73‑1 (MQ=255)
                                                                                                                                                      |                                                                                                                                                     
CTGATACTGATATGAGTCTTACCGCATATACGGTCAATTTCAGCAATTAATTACATTATCCACGCCAAAGTATTTGTCATCACAATGATGGTACCTTCTTTCAGACACCATTTTTTCAACTCCGTTTTCCACGGACCGCACTCTT‑ATGTCAAGAGTGCGGTCCGTGGATACAACCAGAGACCGACTGACACGAGTCAGAGGAAACGACGGATATGTTCAGTCGTAAAATATCTATCAAAAAACATGATTAAGGTCAAAAATGTTTGATATTTACAATTTATGAAGATGACAATAATTAT  >  NC_000913_3_pae_pgi/2068262‑2068560

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.