New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913_3_vch_pgi	1457261 =	41 (1.300)	4 (0.130)	4/274	4.1	9.6%	coding (832/1071 nt)	paaE	ring 1,2‑phenylacetyl‑CoA epoxidase, NAD(P)H oxidoreductase component
	?	NC_000913_3_vch_pgi	1457296 =	36 (1.200)					coding (867/1071 nt)	paaE	ring 1,2‑phenylacetyl‑CoA epoxidase, NAD(P)H oxidoreductase component
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

ACTGGGAATGCCAGATAAAACCATTCATCTGGAGCGGTTTAATACGCCTGGCACGCGCGTCAAACGTAGCGTTAACGTGCAAAGTGACGGACAAAAAGTGACTGTACGTCAGGATGGGCGGGATCGGGAAATCGTGCTTAATGCCGACGATGAAAGCATTCTCGATGCGGCATT‑GCGCCAGGGGGCGGATCTGCCCTATGCCTGCAAAGGCGGCGTCTGTGCGACCTGCAAATGCAAAGTGCTGCGTGGCAAAGTGGCGATGGAAACCAATTACAGTCTGGA  >  NC_000913_3_vch_pgi/1457122‑1457403                                                                                                                                            |                                                                                                                                                aCTGGGAATGCCAGATAAAACCATTCATCTGGAGCGGTTTAATACGCCTGGCACGCGCGTCAAACGTAGCGTTAACGTGCAAAGTGACGGACAAAAAGTGACTGTACGTCAGGCTGGGCGGGCTCGGGAAAGCGTGCTTAATGCcgacg                                                                                                                                        >  2:353156/1‑149 (MQ=255) aCTGGGAATGCCAGATAAAACCATTCATCTGGAGCGGTTTAATACGCCTGGCACGCGCGTCAAACGTAGCGTTAACGTGCAAAGTGACGGACAAAAAGTGACTGTACGTCAGGATGGGCGGGATCGGGAAATCGTGCTTAATGCcgacg                                                                                                                                        >  1:374155/1‑149 (MQ=255)   ggggAAGGCCGGATAAAACCATTCATCTGGAGCGGTTTAATACGCCTGGCACGCGCGTCAAACGTCGCGTTAACGTGCAAAGTGACGGACAAAAAGTGACTGTACGGCAGGATGGGCGGGATCGGGGAATCGCGCTTAATGCCCACGAt                                                                                                                                      >  2:285800/2‑149 (MQ=255)     ggAATGCCAGATAAAACCCTTCATCTGGAGCGGTTTAATACGCGTGGCACGCGCGTCAAACGTAGCGTTAACGTGCAAAGTGACGGACAAATAGTGACTGTACGTCAGGATGGGCGGGTTCGGGAAATCGTGCTTCTTGCCGACGATGa                                                                                                                                    >  2:100886/1‑149 (MQ=255)     ggAATGCCAGATAAAACCATTCAGCTGGAGCGGTTTAATACGCCTGGCACGCGCGTCAAACGTAGCGTTAACGTGCAAAGTGACGGACAAAAAGTGACTGTACGTCAGGATGGGCGGGATCGGGAAATCGTGCTTAATGCCGACGATGa                                                                                                                                    <  1:513813/149‑1 (MQ=255)                            tCTGGAGCGGTTTAATACGCCTGGCACGCGCGTCAAACGTAGCGTTAACGTGCAAAGTGACGGACAAAAAGTGACTGTACGTCAGGATGGGCGGGATCGGGAAATCGTGCTTAATGCCGACGATGAAAGCATTCTCGATGCGGCATT‑gc                                                                                                            >  2:539899/1‑149 (MQ=255)                                 agggggttAATACGCCGGGGACGCGCGTCAAACGTAGCGTTAACGTGCAAAGTGACGGACAAAAAGTGACTGTACGTCAGGATGGGCGGGATCGGGAAATCGTGCTTAATGCCGACGATGAAAGCATTCCCGATGCGGCATT‑GCGCCAg                                                                                                       <  2:379222/143‑1 (MQ=255)                                     gTTTAATACGCCTGGCACGCGCGTCAAACGTAGCGTTAACGTGCAAAGTGACGGACAAAAAGTGACTGTACGTCAGGATGGGCGGGATCGGGAAATCGTGCTTAATGCCGACGATGAAAGCATTCTCGATGCGGCATT‑GCGCCAggggg                                                                                                   <  1:392635/149‑1 (MQ=255)                                      tttAATACGCCTGGCACGCGCGTCAAACGTAGCGTTAACGTGCAAAGTGACGGACAAAAAGTGACTGTACGTCAGGATGGGCGGGATCGGGAAATCGTGCTTAATGCCGACGATGAAAGCATTCTCGATGCGGCATT‑GCGCCAGGGGGc                                                                                                  >  2:129555/1‑149 (MQ=255)                                      tttAATACGCCTGGCACGCGCGTCAAACGTAGCGTTAACGTACAAAGTGACGGACAAAAAGTGACTGTACGTCAGGATGGGCGGGATCGGGAAATCGTGCTTAATGCCGACGATGAAAGCATTCTCGATGCGGCATT‑GCGCCAGGGGGc                                                                                                  >  2:394634/1‑149 (MQ=255)                                              gCCTGGCACGCGCGTCAAACGTAGCGTTAACGTGCAAAGTGACGGACAAAAAGTGACTGTACGTCAGGATGGGCGGGATCGGGAAATCGTGCTTAATGCCGACGATGAAAGCATTCTCGATGGGGCATTAGCCCGAGGGGG‑GGATCTGc                                                                                          >  2:510184/1‑149 (MQ=255)                                                cTGGCACGCGCGTCAAACGTAGCGTTAACGTGCAAAGTGACGGACAAAAAGTGACTGTACGTCAGGCTGGGCGGGATCGGGAAATCGTGCTTAATGCCGACGATGAAAGCATTCTCGAACCGGCATT‑ACGCCAGGGGGCGGACCTGccc                                                                                        >  2:268923/1‑149 (MQ=255)                                                cTGGCACGCGCGTCAAACGTAGCGTTAACGTGCAAAGTGACGGACAAAAAGTGACTGTACGTCAGGATGGGCGGGATCGGGAAATCGTGCTTAATGCCGACGATGAAAGCATTCTCGATGCGGCATT‑GCGCCAGGGGGCGGATCTGccc                                                                                        <  1:334668/149‑1 (MQ=255)                                                  ggCACGCGCGTCAAACGTAGCGTTAACGTGCAAAGTGACGGACAAAAAGTGACTGTACGTCAGGATGGGCGGGATCGGGAAATCGTGCTTAATGCCGACGATGAAAGCATTCTCGATGCGGCATT‑GCGCCAGGGGGCGGATCTGCCCTa                                                                                      <  2:368428/149‑1 (MQ=255)                                                            tCAAACGTAGCGTTAACGTGCAAAGTGACGGACAAAAAGTGACTGTACGTCAGGATGGGCGGGATCGGGAAATCGTGCTTAATGCCGACGATGAAAGCATTCTCGATGCGGCATT‑GCGCCAGGGGGCGGATCTGCCCTATGCCTGCaaa                                                                            <  1:497304/149‑1 (MQ=255)                                                            tCAAACGTAGCGTTAACGTGCAAAGTGACGGACAAAAAGTGACTGTACGTCAGGATGGGCGGGATCGGGAAATCGTGCTTAATGCCGACGATGAAAGCATTCTCGATGCGGCATT‑GCGCCAGGGGGCGGATCTGCCCTATGCCTGCaaa                                                                            <  1:236202/149‑1 (MQ=255)                                                            tCAAACGTAGCGTTAACGTGCAAAGTGACGGACAAAAAGTGACTGTACGTCAGGATGGGCGGGATCGGGAAATCGTGCTTAATGCCGACGATGAAAGCATTCTCGATGCGGCATT‑GCGCCAGGGGGCGGATCTGCCCTATGCCTGCaaa                                                                            <  1:236200/149‑1 (MQ=255)                                                                aCGTAGCGTTAACGTGCAAAGTGACGGACAAAAAGTGACTGTACGTCAGGATGGGCGGGATCGGGAAATCGTGCTTAATGCCGACGATGAAAGCATTCTCGATGCGGCATT‑GCGCCAGGGGGCGGATCTGCCCTATGCCTGCAAAggcg                                                                        <  1:467369/149‑1 (MQ=255)                                                                  gTAGCGTTAACGTGCAAAGTGACGGACAAAAAGTGACTGTACGTCAAGATGGGCGGGATCGGGAAATCGTGCTTAATGCCGACGAAGAAAGCAGTCTCGATGCGGCATT‑GCGCCAGGGGGCGGATCTCCCCTATGCCTGCAAAggcggc                                                                      >  1:494574/1‑149 (MQ=255)                                                                        ttAACGTGCAAAGTGACGGACAAAAAGTGACTGTACGTCAGGATGGGCGGGATCGGGAAATCGTGCTTAATGCCGACGATGAAAGCATTCTCGATGCGGCATT‑GCGCCAGGGGGCGGATCTGCCCTATGCCTGCAAAGGCGGCGTCtgt                                                                >  2:130520/1‑149 (MQ=255)                                                                             gTGCAAAGTGACGGACAAAAAGTGACTGTACGTCAGGATGGGCGGGATCGGGAAATCGTGCTTAATGCCGACGATGAAAGCATTCTCGATGCGGCATT‑GCGCCAGGGGGCGGCGCTGCCCCATGCCTGCAAAGGCGTCGGCTGTGCgcc                                                           >  2:315531/1‑147 (MQ=255)                                                                                 aaaGTGACGGACAAAAAGTGACTGTACGTCAGGATGGGCGGGATCGGGAAATCGTGCTTAATGCCGACGATGAAAGCATtc                                                                                                                            <  2:22643/81‑1 (MQ=255)                                                                                 aaaGTGACGGACAAAAAGTGACTGTACGTCAGGATGGGCGGGATCGGGAAATCGTGCTTAATGCCGACGATGAAAGCATtc                                                                                                                            >  1:22643/1‑81 (MQ=255)                                                                                    ctgacctaCAAAAAGTTACTCTACGTCAGGATGGGCGGGATCGGGAAATCGTGCTTAATGCCGACGATGAAAGCATTCTCGATGCGGCATT‑GCGCCAGGGGGCGGATCTGCCCTATGCCTGCAAAGGCGGCGTCTGTGCGACCtgcaaa                                                    <  1:52706/142‑1 (MQ=255)                                                                                          gACAAAAAGTGACTGTACGTCAGGATGGGCGGGATCGGGAAATCGTGCTTAATGCCGACGATGAAAGCATTCTCGATGCGGCATT‑GCGCCAGGGGGCGGCACTGCCCTATGCCTGCAAAGGCAGCGTCTGTGCGACCtgcaaatgcaaa                                              >  1:381706/1‑149 (MQ=255)                                                                                                aaGTGACTGTACGTCAGGATGGGCGGGATCGGGAAATCGTGCTTAATGCCGACGATGAAAGCATTCTCGATGCGGCATT‑GCGCCAGGGGGCGGATCTGCCCTATGACTGCaaa                                                                            <  1:47502/113‑1 (MQ=255)                                                                                                aaGTGACTGTACGTCAGGATGGGCGGGATCGGGAAATCGTGCTTAATGCCGACGATGAAAGCATTCTCGATGCGGCATT‑GCGCCAGGGGGCGGATCTGCCCTATGACTGCaaa                                                                            >  2:47502/1‑113 (MQ=255)                                                                                                 aGTGACTGTACGTCAGGATGGGCGGGATCGGGAAATCGTGCTTAATGCCGACGATGAAAGCATTCTCGATGCGGCATT‑GCGCCAGGGGGCGGATCTGCCCTATGCCTGCAAAGGCGGCGTCTGTGCGACCTGCAAATGCAAAGtgctgc                                       <  1:62081/149‑1 (MQ=255)                                                                                                       tGTACGTCAGGATGGGCGGGATCGGGAAATCGTGCTTAATGCCGACGATGAAAGCATTCTCGATGCGGCATT‑GCGCCAGGGGGCGGATCTGCCCTATGCCTGCAAAGGCGGCGTCTGTGCGACCTGCAAATGCAAAGTGCTGCGTGGCa                                 >  2:549642/1‑149 (MQ=255)                                                                                                        gTACGTCAGGATGGGCGGGATCGGGAAATCGTGCTTAATGCCGACGATGAAAGCATTCTCGATGCGGCATT‑GCGCCAGGGGGCGGATCTGCCCTATGCCTGCAAAGGCGGCGTCTGTGCGAGCTGCAAATGCAAAGTGCTGCGTGGCaa                                >  1:332468/1‑149 (MQ=255)                                                                                                           cGTCAGGATGGGCGGGATCGGGAAATCGTGCTTAATGCCGACGATGAAAGCATTCTCGATGCGGCATT‑GCGCCAGGGGGCGGATCTGCCCTATGCCTGCAAAGGCGGCGTCTGTGCGACCTGCAAATGCAAAGTGCTGCGTGGCAAAGt                             <  1:394634/149‑1 (MQ=255)                                                                                                             tCAGGATGGGCGGGATCGGGAAATCGTGCTTAATGCCGCCGATGAAAGCATTCTCGATGCGGCATT‑GCGCCAGGGGGCGGATCTGCCCTATGCCTGCAAGGGCGGCATCTGTGCGACCTGCAAATGCCAAGTGCCGCGTCGccccgtgg                           >  2:532110/1‑142 (MQ=255)                                                                                                             tCAGGATGGGCGGGATCGGGAAATCGTGCTTAATGCCGACGATGAAAGCATTCTCGATGCGGCATT‑GCGCCAGGGGGCGGATCTGCCCTATGCCTGCAAAGGCGGCGTCTGTGCGACCTGCAAATGCAAAGTGCTGCGTGGCAAAGTgg                           >  1:345857/1‑149 (MQ=255)                                                                                                             tCAGGATGGGCGGGATCGGGAAATCGTGCTTAATGCCGACGATGAAAGCATTCTCGATGCGGCATT‑GCGCCAGGGGGCGGATCTGCCCTAGGCCTGCAAAGGCGGCGTCTGTGCGACCTGCAAATGCAAAGTGCTGCGTGGCAAAGTgg                           <  1:130520/149‑1 (MQ=255)                                                                                                               aGGATGGGCGGGATCGGGAAATCGTGCTTAATGCCGACGATGAAAGCATTCTCGATGCGGCATT‑GCGCCAGGGGGCGGATCTGCCCTATGCCTGCAAAGGCGGCGTCTGTGCGACCTGCAAATGCAAAGTGCTGCGTGGCAAAGTGGCg                         >  1:253706/1‑149 (MQ=255)                                                                                                                  aTGGGCGGGATCGGGAAATCGTGCTTAATGCCGACGATGAAAGCATTCTCGATGCGGCATT‑GCGCCAGGGGGCGGATCTGCCCTATGCCTGCAAAGGCGGCGTCTGTGCGACCTGCAAATGCAAAGTGCTGCGTGGCAAAGTGGCGATg                      <  1:456122/149‑1 (MQ=255)                                                                                                                            tCGGGAAATCGGGCTTAATGCCGACGATGAAAGCATTCTCGATGCGGCATT‑GCGCCAGGGGGCGGATCTGCCCTATGCCTGCAAAGGCGGCGTCTGTGCGACCTGCAAATGCAAAGTGCTGCGTGGCAAAGTGGCGATGGAAACCAAtt            <  2:279201/149‑1 (MQ=255)                                                                                                                             cGGGAAATCGTGCTTAATGCCGACGATGAAAGCATTCTCGATGCGGCATT‑GCGCCAGGGGGCGGATCTGCCCTATGCCTGCAAAGGCGGCGTCTGTGCGACCTGCAAATGCAAAGTGCTGCGTGGCAAAGTGGCGATGGAAACCAATTa           <  2:345857/149‑1 (MQ=255)                                                                                                                               ggAAATCGTGCTTAAAGCCGACGATGAAAGCATGACCGATGCGGCATT‑GCGCCAGGGGGAGGATCTGCCCTATGCCTGCAAAGGCGGGGTTTGTGCGACCTGCAAATGCAAAGTGCTGCGTGGCAAAGTGGCGATGGAAACCAATTACa         <  2:49138/149‑1 (MQ=255)                                                                                                                                   aTCGTGCTTAATGCCGACGATGAAAGCATTCTCTACTCGGTAGT‑GTGCCAGGGGGCGGATCTGCCCTATGCCTGCAAAGGCGGCGTCTGTGCGACCTGCAAATGCAAAGTGCTGCGTGGCAAATTGGCGATGGAAACCAATTACAGTCt     <  1:518058/149‑1 (MQ=255)                                                                                                                                      gTGCTTAATGCCGACGATGAAAGCATTCTCGAAGCGGCATC‑GCGCCAGGGGGCGGATCTGCCCTATGCCTGCAACGGCGCCGTCTGTGCGACCGGCAAATCCCAAGTGCTGCCGGGCAAGATGGCGATGGAAACAAGCTCCACTCTGGa  >  2:150435/1‑149 (MQ=255)                                                                                                                                            |                                                                                                                                                ACTGGGAATGCCAGATAAAACCATTCATCTGGAGCGGTTTAATACGCCTGGCACGCGCGTCAAACGTAGCGTTAACGTGCAAAGTGACGGACAAAAAGTGACTGTACGTCAGGATGGGCGGGATCGGGAAATCGTGCTTAATGCCGACGATGAAAGCATTCTCGATGCGGCATT‑GCGCCAGGGGGCGGATCTGCCCTATGCCTGCAAAGGCGGCGTCTGTGCGACCTGCAAATGCAAAGTGCTGCGTGGCAAAGTGGCGATGGAAACCAATTACAGTCTGGA  >  NC_000913_3_vch_pgi/1457122‑1457403

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.