New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913_3_vch_pgi	1457261 =	41 (1.300)	4 (0.130)	4/274	4.1	9.6%	coding (832/1071 nt)	paaE	ring 1,2‑phenylacetyl‑CoA epoxidase, NAD(P)H oxidoreductase component
	?	NC_000913_3_vch_pgi	1457296 =	36 (1.200)					coding (867/1071 nt)	paaE	ring 1,2‑phenylacetyl‑CoA epoxidase, NAD(P)H oxidoreductase component
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

TCTGGAGCGGTTTAATACGCCTGGCACGCGCGTCAAACGTAGCGTTAACGTGCAAAGTGACGGACAAAAAGTGACTGTACGTCAGGATGGGCGGGATCGGGAAATCGTGCTTAATGCCGACGATGAAAGCATTCTCGATGCGGCATT‑GCGCCAGGGGGCGGATCTGCCCTATGCCTGCAAAGGCGGCGTCTGTGCGACCTGCAAATGCAAAGTGCTGCGTGGCAAAGTGGCGATGGAAACCAATTACAGTCTGGAACCGGATGAACTGGCCGCAGGTTATGTGTTGAGTTGCCAGG  >  NC_000913_3_vch_pgi/1457149‑1457444                                                                                                                                                     |                                                                                                                                                     tCTGGAGCGGTTTAATACGCCTGGCACGCGCGTCAAACGTAGCGTTAACGTGCAAAGTGACGGACAAAAAGTGACTGTACGTCAGGATGGGCGGGATCGGGAAATCGTGCTTAATGCCGACGATGAAAGCATTCTCGATGCGGCATT‑gc                                                                                                                                                     >  2:539899/1‑149 (MQ=255)      agggggttAATACGCCGGGGACGCGCGTCAAACGTAGCGTTAACGTGCAAAGTGACGGACAAAAAGTGACTGTACGTCAGGATGGGCGGGATCGGGAAATCGTGCTTAATGCCGACGATGAAAGCATTCCCGATGCGGCATT‑GCGCCAg                                                                                                                                                <  2:379222/143‑1 (MQ=255)          gTTTAATACGCCTGGCACGCGCGTCAAACGTAGCGTTAACGTGCAAAGTGACGGACAAAAAGTGACTGTACGTCAGGATGGGCGGGATCGGGAAATCGTGCTTAATGCCGACGATGAAAGCATTCTCGATGCGGCATT‑GCGCCAggggg                                                                                                                                            <  1:392635/149‑1 (MQ=255)           tttAATACGCCTGGCACGCGCGTCAAACGTAGCGTTAACGTGCAAAGTGACGGACAAAAAGTGACTGTACGTCAGGATGGGCGGGATCGGGAAATCGTGCTTAATGCCGACGATGAAAGCATTCTCGATGCGGCATT‑GCGCCAGGGGGc                                                                                                                                           >  2:129555/1‑149 (MQ=255)           tttAATACGCCTGGCACGCGCGTCAAACGTAGCGTTAACGTACAAAGTGACGGACAAAAAGTGACTGTACGTCAGGATGGGCGGGATCGGGAAATCGTGCTTAATGCCGACGATGAAAGCATTCTCGATGCGGCATT‑GCGCCAGGGGGc                                                                                                                                           >  2:394634/1‑149 (MQ=255)                   gCCTGGCACGCGCGTCAAACGTAGCGTTAACGTGCAAAGTGACGGACAAAAAGTGACTGTACGTCAGGATGGGCGGGATCGGGAAATCGTGCTTAATGCCGACGATGAAAGCATTCTCGATGGGGCATTAGCCCGAGGGGG‑GGATCTGc                                                                                                                                   >  2:510184/1‑149 (MQ=255)                     cTGGCACGCGCGTCAAACGTAGCGTTAACGTGCAAAGTGACGGACAAAAAGTGACTGTACGTCAGGCTGGGCGGGATCGGGAAATCGTGCTTAATGCCGACGATGAAAGCATTCTCGAACCGGCATT‑ACGCCAGGGGGCGGACCTGccc                                                                                                                                 >  2:268923/1‑149 (MQ=255)                     cTGGCACGCGCGTCAAACGTAGCGTTAACGTGCAAAGTGACGGACAAAAAGTGACTGTACGTCAGGATGGGCGGGATCGGGAAATCGTGCTTAATGCCGACGATGAAAGCATTCTCGATGCGGCATT‑GCGCCAGGGGGCGGATCTGccc                                                                                                                                 <  1:334668/149‑1 (MQ=255)                       ggCACGCGCGTCAAACGTAGCGTTAACGTGCAAAGTGACGGACAAAAAGTGACTGTACGTCAGGATGGGCGGGATCGGGAAATCGTGCTTAATGCCGACGATGAAAGCATTCTCGATGCGGCATT‑GCGCCAGGGGGCGGATCTGCCCTa                                                                                                                               <  2:368428/149‑1 (MQ=255)                                 tCAAACGTAGCGTTAACGTGCAAAGTGACGGACAAAAAGTGACTGTACGTCAGGATGGGCGGGATCGGGAAATCGTGCTTAATGCCGACGATGAAAGCATTCTCGATGCGGCATT‑GCGCCAGGGGGCGGATCTGCCCTATGCCTGCaaa                                                                                                                     <  1:236202/149‑1 (MQ=255)                                 tCAAACGTAGCGTTAACGTGCAAAGTGACGGACAAAAAGTGACTGTACGTCAGGATGGGCGGGATCGGGAAATCGTGCTTAATGCCGACGATGAAAGCATTCTCGATGCGGCATT‑GCGCCAGGGGGCGGATCTGCCCTATGCCTGCaaa                                                                                                                     <  1:236200/149‑1 (MQ=255)                                 tCAAACGTAGCGTTAACGTGCAAAGTGACGGACAAAAAGTGACTGTACGTCAGGATGGGCGGGATCGGGAAATCGTGCTTAATGCCGACGATGAAAGCATTCTCGATGCGGCATT‑GCGCCAGGGGGCGGATCTGCCCTATGCCTGCaaa                                                                                                                     <  1:497304/149‑1 (MQ=255)                                     aCGTAGCGTTAACGTGCAAAGTGACGGACAAAAAGTGACTGTACGTCAGGATGGGCGGGATCGGGAAATCGTGCTTAATGCCGACGATGAAAGCATTCTCGATGCGGCATT‑GCGCCAGGGGGCGGATCTGCCCTATGCCTGCAAAggcg                                                                                                                 <  1:467369/149‑1 (MQ=255)                                       gTAGCGTTAACGTGCAAAGTGACGGACAAAAAGTGACTGTACGTCAAGATGGGCGGGATCGGGAAATCGTGCTTAATGCCGACGAAGAAAGCAGTCTCGATGCGGCATT‑GCGCCAGGGGGCGGATCTCCCCTATGCCTGCAAAggcggc                                                                                                               >  1:494574/1‑149 (MQ=255)                                             ttAACGTGCAAAGTGACGGACAAAAAGTGACTGTACGTCAGGATGGGCGGGATCGGGAAATCGTGCTTAATGCCGACGATGAAAGCATTCTCGATGCGGCATT‑GCGCCAGGGGGCGGATCTGCCCTATGCCTGCAAAGGCGGCGTCtgt                                                                                                         >  2:130520/1‑149 (MQ=255)                                                  gTGCAAAGTGACGGACAAAAAGTGACTGTACGTCAGGATGGGCGGGATCGGGAAATCGTGCTTAATGCCGACGATGAAAGCATTCTCGATGCGGCATT‑GCGCCAGGGGGCGGCGCTGCCCCATGCCTGCAAAGGCGTCGGCTGTGCgcc                                                                                                    >  2:315531/1‑147 (MQ=255)                                                         ctgacctaCAAAAAGTTACTCTACGTCAGGATGGGCGGGATCGGGAAATCGTGCTTAATGCCGACGATGAAAGCATTCTCGATGCGGCATT‑GCGCCAGGGGGCGGATCTGCCCTATGCCTGCAAAGGCGGCGTCTGTGCGACCtgcaaa                                                                                             <  1:52706/142‑1 (MQ=255)                                                               gACAAAAAGTGACTGTACGTCAGGATGGGCGGGATCGGGAAATCGTGCTTAATGCCGACGATGAAAGCATTCTCGATGCGGCATT‑GCGCCAGGGGGCGGCACTGCCCTATGCCTGCAAAGGCAGCGTCTGTGCGACCtgcaaatgcaaa                                                                                       >  1:381706/1‑149 (MQ=255)                                                                     aaGTGACTGTACGTCAGGATGGGCGGGATCGGGAAATCGTGCTTAATGCCGACGATGAAAGCATTCTCGATGCGGCATT‑GCGCCAGGGGGCGGATCTGCCCTATGACTGCaaa                                                                                                                     >  2:47502/1‑113 (MQ=255)                                                                     aaGTGACTGTACGTCAGGATGGGCGGGATCGGGAAATCGTGCTTAATGCCGACGATGAAAGCATTCTCGATGCGGCATT‑GCGCCAGGGGGCGGATCTGCCCTATGACTGCaaa                                                                                                                     <  1:47502/113‑1 (MQ=255)                                                                      aGTGACTGTACGTCAGGATGGGCGGGATCGGGAAATCGTGCTTAATGCCGACGATGAAAGCATTCTCGATGCGGCATT‑GCGCCAGGGGGCGGATCTGCCCTATGCCTGCAAAGGCGGCGTCTGTGCGACCTGCAAATGCAAAGtgctgc                                                                                <  1:62081/149‑1 (MQ=255)                                                                            tGTACGTCAGGATGGGCGGGATCGGGAAATCGTGCTTAATGCCGACGATGAAAGCATTCTCGATGCGGCATT‑GCGCCAGGGGGCGGATCTGCCCTATGCCTGCAAAGGCGGCGTCTGTGCGACCTGCAAATGCAAAGTGCTGCGTGGCa                                                                          >  2:549642/1‑149 (MQ=255)                                                                             gTACGTCAGGATGGGCGGGATCGGGAAATCGTGCTTAATGCCGACGATGAAAGCATTCTCGATGCGGCATT‑GCGCCAGGGGGCGGATCTGCCCTATGCCTGCAAAGGCGGCGTCTGTGCGAGCTGCAAATGCAAAGTGCTGCGTGGCaa                                                                         >  1:332468/1‑149 (MQ=255)                                                                                cGTCAGGATGGGCGGGATCGGGAAATCGTGCTTAATGCCGACGATGAAAGCATTCTCGATGCGGCATT‑GCGCCAGGGGGCGGATCTGCCCTATGCCTGCAAAGGCGGCGTCTGTGCGACCTGCAAATGCAAAGTGCTGCGTGGCAAAGt                                                                      <  1:394634/149‑1 (MQ=255)                                                                                  tCAGGATGGGCGGGATCGGGAAATCGTGCTTAATGCCGCCGATGAAAGCATTCTCGATGCGGCATT‑GCGCCAGGGGGCGGATCTGCCCTATGCCTGCAAGGGCGGCATCTGTGCGACCTGCAAATGCCAAGTGCCGCGTCGccccgtgg                                                                    >  2:532110/1‑142 (MQ=255)                                                                                  tCAGGATGGGCGGGATCGGGAAATCGTGCTTAATGCCGACGATGAAAGCATTCTCGATGCGGCATT‑GCGCCAGGGGGCGGATCTGCCCTATGCCTGCAAAGGCGGCGTCTGTGCGACCTGCAAATGCAAAGTGCTGCGTGGCAAAGTgg                                                                    >  1:345857/1‑149 (MQ=255)                                                                                  tCAGGATGGGCGGGATCGGGAAATCGTGCTTAATGCCGACGATGAAAGCATTCTCGATGCGGCATT‑GCGCCAGGGGGCGGATCTGCCCTAGGCCTGCAAAGGCGGCGTCTGTGCGACCTGCAAATGCAAAGTGCTGCGTGGCAAAGTgg                                                                    <  1:130520/149‑1 (MQ=255)                                                                                    aGGATGGGCGGGATCGGGAAATCGTGCTTAATGCCGACGATGAAAGCATTCTCGATGCGGCATT‑GCGCCAGGGGGCGGATCTGCCCTATGCCTGCAAAGGCGGCGTCTGTGCGACCTGCAAATGCAAAGTGCTGCGTGGCAAAGTGGCg                                                                  >  1:253706/1‑149 (MQ=255)                                                                                       aTGGGCGGGATCGGGAAATCGTGCTTAATGCCGACGATGAAAGCATTCTCGATGCGGCATT‑GCGCCAGGGGGCGGATCTGCCCTATGCCTGCAAAGGCGGCGTCTGTGCGACCTGCAAATGCAAAGTGCTGCGTGGCAAAGTGGCGATg                                                               <  1:456122/149‑1 (MQ=255)                                                                                                 tCGGGAAATCGGGCTTAATGCCGACGATGAAAGCATTCTCGATGCGGCATT‑GCGCCAGGGGGCGGATCTGCCCTATGCCTGCAAAGGCGGCGTCTGTGCGACCTGCAAATGCAAAGTGCTGCGTGGCAAAGTGGCGATGGAAACCAAtt                                                     <  2:279201/149‑1 (MQ=255)                                                                                                  cGGGAAATCGTGCTTAATGCCGACGATGAAAGCATTCTCGATGCGGCATT‑GCGCCAGGGGGCGGATCTGCCCTATGCCTGCAAAGGCGGCGTCTGTGCGACCTGCAAATGCAAAGTGCTGCGTGGCAAAGTGGCGATGGAAACCAATTa                                                    <  2:345857/149‑1 (MQ=255)                                                                                                    ggAAATCGTGCTTAAAGCCGACGATGAAAGCATGACCGATGCGGCATT‑GCGCCAGGGGGAGGATCTGCCCTATGCCTGCAAAGGCGGGGTTTGTGCGACCTGCAAATGCAAAGTGCTGCGTGGCAAAGTGGCGATGGAAACCAATTACa                                                  <  2:49138/149‑1 (MQ=255)                                                                                                        aTCGTGCTTAATGCCGACGATGAAAGCATTCTCTACTCGGTAGT‑GTGCCAGGGGGCGGATCTGCCCTATGCCTGCAAAGGCGGCGTCTGTGCGACCTGCAAATGCAAAGTGCTGCGTGGCAAATTGGCGATGGAAACCAATTACAGTCt                                              <  1:518058/149‑1 (MQ=255)                                                                                                           gTGCTTAATGCCGACGATGAAAGCATTCTCGAAGCGGCATC‑GCGCCAGGGGGCGGATCTGCCCTATGCCTGCAACGGCGCCGTCTGTGCGACCGGCAAATCCCAAGTGCTGCCGGGCAAGATGGCGATGGAAACAAGCTCCACTCTGGa                                           >  2:150435/1‑149 (MQ=255)                                                                                                                      cgacgaTGAAAGCATTCTCGATGCGGCATT‑GCGCCAGGGGGCGGATCTGCCCTATGCCTGCAAAGGCGGCGTCTGTGCGACCTGCAAATGCAAAGTGCTGCGTGGCaaa                                                                        <  1:394170/109‑1 (MQ=255)                                                                                                                      cgacgaTGAAAGCATTCTCGATGCGGCATT‑GCGCCAGGGGGCGGATCTGCCCTATGCCTGCAAAGGCGGCGTCTGTGCGACCTGCAAATGCAAAGTGCTGCGTGGCaaa                                                                        >  2:394170/1‑109 (MQ=255)                                                                                                                                                   t‑GCGCCAGGGGGCGGATCTGCCCTATGCCTGCAAAGGCGGCGTCTGTGCGACCTGCAAATGCAAAGTGCTGCGTGGCAAAGTGGCGATGGAAACCAATTACAGTCTGGAACCGGATGAACTGGCCGCAGGTTATGTGTTGAGTTGCCAg   <  1:448146/149‑1 (MQ=255)                                                                                                                                                     gcgcCAGGGGGCGGATCTGCCCTATGCCTGCAAAGGCGGCGTCTGTGCGACCTGCAAATGCAAAGTGCTGCGTGGCAAAGTGGCGATGGAAACCAATTACAGTCTGGAACCGGATGAACTGGCCGCAGGTTATGTGTTGAGTTGCCAgg  <  1:129555/149‑1 (MQ=255)                                                                                                                                                     |                                                                                                                                                     TCTGGAGCGGTTTAATACGCCTGGCACGCGCGTCAAACGTAGCGTTAACGTGCAAAGTGACGGACAAAAAGTGACTGTACGTCAGGATGGGCGGGATCGGGAAATCGTGCTTAATGCCGACGATGAAAGCATTCTCGATGCGGCATT‑GCGCCAGGGGGCGGATCTGCCCTATGCCTGCAAAGGCGGCGTCTGTGCGACCTGCAAATGCAAAGTGCTGCGTGGCAAAGTGGCGATGGAAACCAATTACAGTCTGGAACCGGATGAACTGGCCGCAGGTTATGTGTTGAGTTGCCAGG  >  NC_000913_3_vch_pgi/1457149‑1457444

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.