New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913_3_vch_pgi	= 1298962	10 (0.670)	3 (0.200)	3/284	1.8	23.3%	coding (365/648 nt)	ychE	UPF0056 family inner membrane protein
	?	NC_000913_3_vch_pgi	= 1298992	10 (0.680)					coding (395/648 nt)	ychE	UPF0056 family inner membrane protein

ATCAATTGATTCGTTCCGTATCGCCGGGGGTATCCTGGTGGTGACAATAGCGATGTCGATGATCAGCGGCAAGCTTGGCGAGGATAAACAGAACAAGCAAGAAAAATCAGAAACCGCGGTACGTGAAAGCATTGGTGTGGTGCCACTGGCGTTGCCGTTGATGGCGGGGCCAGGGGCGATCAGTTCTACCATCGTCTGGGGTACGCGTTATCACAGCATTAGCTATCTGTTTGGTTTCTTTGTGGCTATTGCATTGTTCGCTTTATGTTG  >  NC_000913_3_vch_pgi/1298819‑1299088                                                                                                                                                |                                                                                                                               atCAATTGATTCGTTCCGTATCGCCGGGGGTATCCTGGTGGTGACAATAGCGATGTCGATGATCAGCGGCAAGCTTGGCGAGGATAAACAGAACAAGCAAGAAAAATCAGAAACCGCGGTACGTGAAAGCATTGGTGTGGTGCCACTgg                                                                                                                           <  1:57468/149‑1 (MQ=255)  tCAATTGATTCGTTCCGTATCGCCGGGGGTATCCTGGTGGTGACAATAGCGATGTCGATGATCAGCGGCAAGCTTGGCGAGGGTAAACCGAACATACAATAAAAATCGGCAACCGCGGTACGTGAAAGCATTGGGGTGGTGCCcctggc                                                                                                                          >  1:184299‑M1/1‑143 (MQ=255)              ttCCGTATCGCCGGGGGTATCCTGGTGGTGACAATAGCGATGTCGATGATCAGCGGCAAGCTTGGCGAGGATAAACAGAACAAGCAAGAAAAATCAGAAACCGCGGTACGTGAAAGCATTGGTGTGGTGCCACTGGCGTTGCCGTTGAt                                                                                                              >  1:111725/1‑149 (MQ=255)                     tCGCCGGGGCTATCCTGGTGGTGACAATAGCGATGTCGATGATCAGCGGCAAGCTTGGCGAGGATAAACAGAACAAGCAAGAAAAATCAGAAACCGCGGTACGTGAAAGCATTGGTGTGGTGCCACTGGCGTTGCCGTTCATGGCgggg                                                                                                       >  2:31650/1‑149 (MQ=255)                                       tggggACAATAGCGATGTCGATGATCAGCGGCAAGCTTGGCGAGGATAAACAGAACAAGCAAGAAAAATCAGAAACCGCGGTACGTGAAAGCATTGGTGTGGTGCCACTGGCGGTGCCGTTGATGGCGGGGCCAGGGGCGATCAGTTCt                                                                                     <  1:145780/149‑1 (MQ=255)                                             cAATAGCGATGTCGATGATCAGCGGCAAGCTTGGCGAGGATAAACAGAACAAGCAAGAAAAATCAGAAACCGCGGTACGTGAAAGCATTGGTGTGGTGCCACTGGCGTTGCCGTTGATGGCGGGGCCAGGGGCGATCAGTTCTACCATc                                                                               <  2:111725/149‑1 (MQ=255)                                                   cGATGTCGATGATCAGCGGCAAGCTTGGCGAGGATAAACAGAACAAGCAAGAAAAATCAGAAACCGCGGTACGTGAAAGCATTGGTGTGGTGCCACTGGCGTTGCCGTTGATGGCGGGGCCAGGGGCGATCAGTTCTACCATCGTCTgg                                                                         <  1:221369/149‑1 (MQ=255)                                                     aTGTCGATGATCAGCGGCAAGCTTGGCGAGGATAAACAGAACAAGCAAGAAAAATCAGAAACCGCGGTACGTGAAAGCATTGGTGTGGTGCCACTGGCGTTGCCGTTGATGGCGGGGCCAGGGGCGATCAGTTCTACCATCGTCTgggg                                                                       >  1:178365/1‑149 (MQ=255)                                                          gatgatCAGCGGCAAGCTTGGCGAGGATAAACAGAACAAGCAAGAAAAATCAGAAACCGCGGTACGTGAAAGCATTGGTGTGGTGCCcctggccccgccatcaacggcaacgccagtggcacca                                                                                           >  1:3478‑M1/1‑87 (MQ=255)                                                          gatgatCAGCGGCAAGCTTGGCGAGGATAAACAGAACAAGCAAGAAAAATCAGAAACCGCGGTACGTGAAAGCATTGGTGTGGTGCCcctggccccgccatcaacggcaacgccagtggcacca                                                                                           <  2:3478‑M1/124‑38 (MQ=255)                                                                    ggCAAGCTTGGCGAGGATAAACAGAACAAGCAAGAAAAATCAGAAACCGCGGTACGTGAAAGCATTGGTGTGGTGCCACTGGCGTTGCCGTTGATGGCGGGGCCAGGGGCGATCAGTTCTACCATCGTCTGGGGACCGCGTTATCACAg                                                        >  2:125111/1‑149 (MQ=255)                                                                                                                       gTACGTGAAAGCATTGGTGTGGTGCCACTGGCGTTGCCGTTGATGGCGGGGCCAGGGGCGATCAGTTCTACCATCGTCTGGGGTACGCGTTATCACAGCATTAGCTATCTGTTTGGTTTCTTTGTGGCTATTGCATTGTTCGCTTTAtg     <  1:256493/149‑1 (MQ=255)                                                                                                                          tgggAAAGCATTGGTGTGGTGCTACTGGCGTTGCCGTTGATGGCGGGGCCAGGGGCGATCAGTTCTACCATCGTCTGGGGTACGCGTTATCACAGCATTAGCTATCTGTTTGGTTTCTTTGTGGCTATTGCATTGTTCGCTTTAtgttg  <  2:199907/146‑1 (MQ=255)                                                                                                                                          tggtgCCACTGGCGTTGCCGTTGATGGCGGGGCCAGGggcaccacaccaatgctttcacgtaccgcggtttctgatttttcttgcttgttctgtttatcctcgccaagcttgccgctgatcatc           >  1:3478‑M2/1‑37 (MQ=255)                                                                                                                                          tggtgCCACTGGCGTTGCCGTTGATGGCGGGGCCAGGggcaccacaccaatgctttcacgtaccgcggtttctgatttttcttgcttgttctgtttatcctcgccaagcttgccgctgatcatc           <  2:3478‑M2/124‑88 (MQ=255)                                                                                                                                                |                                                                                                                               ATCAATTGATTCGTTCCGTATCGCCGGGGGTATCCTGGTGGTGACAATAGCGATGTCGATGATCAGCGGCAAGCTTGGCGAGGATAAACAGAACAAGCAAGAAAAATCAGAAACCGCGGTACGTGAAAGCATTGGTGTGGTGCCACTGGCGTTGCCGTTGATGGCGGGGCCAGGGGCGATCAGTTCTACCATCGTCTGGGGTACGCGTTATCACAGCATTAGCTATCTGTTTGGTTTCTTTGTGGCTATTGCATTGTTCGCTTTATGTTG  >  NC_000913_3_vch_pgi/1298819‑1299088

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.